Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07030

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,575,761	+		DDA3937_RS07020	0.64	-1.0
1,575,761	+		DDA3937_RS07020	0.64	-0.9
1,575,761	+		DDA3937_RS07020	0.64	+2.9
1,575,762	-		DDA3937_RS07020	0.64	-0.7
1,575,868	+		DDA3937_RS07020	0.71	-3.0
1,575,924	+		DDA3937_RS07020	0.75	+1.4
1,575,925	-		DDA3937_RS07020	0.75	-2.3
1,575,946	+		DDA3937_RS07020	0.76	-1.2
1,575,946	+		DDA3937_RS07020	0.76	+0.3
1,575,946	+		DDA3937_RS07020	0.76	+0.3
1,575,965	+		DDA3937_RS07020	0.77	+1.2
1,575,966	-		DDA3937_RS07020	0.78	+1.5
1,575,989	+		DDA3937_RS07020	0.79	-2.2
1,575,989	+		DDA3937_RS07020	0.79	+0.9
1,575,989	+		DDA3937_RS07020	0.79	-2.3
1,575,989	+		DDA3937_RS07020	0.79	-1.7
1,575,989	+		DDA3937_RS07020	0.79	-2.5
1,575,989	+		DDA3937_RS07020	0.79	-3.3
1,575,990	-		DDA3937_RS07020	0.79	-0.6
1,575,990	-		DDA3937_RS07020	0.79	+1.4
1,575,990	-		DDA3937_RS07020	0.79	-2.9
1,575,990	-		DDA3937_RS07020	0.79	+2.8
1,575,990	-		DDA3937_RS07020	0.79	-2.2
1,576,019	+		DDA3937_RS07020	0.81	+0.4
1,576,019	+		DDA3937_RS07020	0.81	+0.7
1,576,019	+		DDA3937_RS07020	0.81	-1.4
1,576,020	-		DDA3937_RS07020	0.81	+1.7
1,576,029	+		DDA3937_RS07020	0.82	-3.3
1,576,029	+		DDA3937_RS07020	0.82	-2.3
1,576,030	-		DDA3937_RS07020	0.82	+1.8
1,576,030	-		DDA3937_RS07020	0.82	-1.2
1,576,091	-		DDA3937_RS07020	0.86	+1.1
1,576,106	+		DDA3937_RS07020	0.87	+0.8
1,576,106	+		DDA3937_RS07020	0.87	-2.0
1,576,107	-		DDA3937_RS07020	0.87	-0.7
1,576,107	-		DDA3937_RS07020	0.87	-1.4
1,576,107	-		DDA3937_RS07020	0.87	+1.5
1,576,107	-		DDA3937_RS07020	0.87	-2.0
1,576,140	+		DDA3937_RS07020	0.89	+1.1
1,576,140	+		DDA3937_RS07020	0.89	-3.9
1,576,140	+		DDA3937_RS07020	0.89	+0.1
1,576,140	+		DDA3937_RS07020	0.89	+0.3
1,576,140	+		DDA3937_RS07020	0.89	-1.7
1,576,140	+		DDA3937_RS07020	0.89	+0.0
1,576,140	+		DDA3937_RS07020	0.89	-0.9
1,576,140	+		DDA3937_RS07020	0.89	-2.6
1,576,141	-		DDA3937_RS07020	0.89	+1.6
1,576,141	-		DDA3937_RS07020	0.89	-0.4
1,576,141	-		DDA3937_RS07020	0.89	-1.9
1,576,144	+		DDA3937_RS07020	0.90	+0.2
1,576,145	-		DDA3937_RS07020	0.90	+2.4
1,576,188	+				-0.9
1,576,188	+				-1.4
1,576,188	+				+1.7
1,576,188	+				+0.1
1,576,189	-				-0.6
1,576,189	-				-0.6
1,576,189	-				-2.7
1,576,189	-				+1.8
1,576,189	-				-2.0
1,576,189	-				-0.7
1,576,244	+				-2.3
1,576,244	+				+1.9
1,576,245	-				+0.4
1,576,245	-				-0.9
1,576,245	-				-2.8
1,576,245	-				-1.2
1,576,245	-				-0.2
1,576,245	-				+1.7
1,576,245	-				+0.3
1,576,245	-				-2.0
1,576,245	-				+0.1
1,576,245	-				+2.4
1,576,447	+		DDA3937_RS07025	0.33	-0.1
1,576,561	+		DDA3937_RS07025	0.59	+1.6
1,576,561	+		DDA3937_RS07025	0.59	+1.9
1,576,561	+		DDA3937_RS07025	0.59	-2.5
1,576,561	+		DDA3937_RS07025	0.59	-3.7
1,576,561	+		DDA3937_RS07025	0.59	+0.8
1,576,561	+		DDA3937_RS07025	0.59	+1.7
1,576,561	+		DDA3937_RS07025	0.59	-1.4
1,576,561	+		DDA3937_RS07025	0.59	-0.3
1,576,562	-		DDA3937_RS07025	0.60	+1.8
1,576,562	-		DDA3937_RS07025	0.60	+0.6
1,576,613	+		DDA3937_RS07025	0.72	+0.7
1,576,696	+				-0.6
1,576,696	+				+1.5
1,576,696	+				+0.2
1,576,697	-				+1.0
1,576,697	-				+0.7
1,576,702	+				+0.9
1,576,703	-				-2.3
1,576,721	+				-1.2
1,576,721	+				-1.6
1,576,722	-				-1.6
1,576,737	+				-1.2
1,576,737	+				+0.4
1,576,811	-				-1.6
1,576,970	-		DDA3937_RS07030	0.13	+1.2
1,577,126	-		DDA3937_RS07030	0.22	-3.7
1,577,236	-		DDA3937_RS07030	0.28	-1.4
1,577,269	-		DDA3937_RS07030	0.30	-3.7
1,577,276	-		DDA3937_RS07030	0.30	+1.4
1,577,284	+		DDA3937_RS07030	0.31	-1.7
1,577,284	+		DDA3937_RS07030	0.31	-3.4
1,577,284	+		DDA3937_RS07030	0.31	+2.9
1,577,420	-		DDA3937_RS07030	0.39	+1.8
1,577,446	+		DDA3937_RS07030	0.40	+1.3
1,577,446	+		DDA3937_RS07030	0.40	-0.6
1,577,446	+		DDA3937_RS07030	0.40	-0.2
1,577,446	+		DDA3937_RS07030	0.40	-1.2
1,577,447	-		DDA3937_RS07030	0.40	+1.1
1,577,447	-		DDA3937_RS07030	0.40	+0.1
1,577,447	-		DDA3937_RS07030	0.40	-0.1
1,577,447	-		DDA3937_RS07030	0.40	-1.6
1,577,598	+		DDA3937_RS07030	0.49	-1.0
1,577,599	-		DDA3937_RS07030	0.49	+1.4
1,577,599	-		DDA3937_RS07030	0.49	-2.4
1,577,643	+		DDA3937_RS07030	0.51	+2.4
1,577,643	+		DDA3937_RS07030	0.51	-1.2
1,577,643	+		DDA3937_RS07030	0.51	+1.8
1,577,643	+		DDA3937_RS07030	0.51	+2.1
1,577,644	-		DDA3937_RS07030	0.51	-0.3
1,577,644	-		DDA3937_RS07030	0.51	-1.2
1,577,644	-		DDA3937_RS07030	0.51	+1.9
1,577,690	-		DDA3937_RS07030	0.54	+0.8
1,577,785	+		DDA3937_RS07030	0.59	+0.5
1,577,785	+		DDA3937_RS07030	0.59	-1.4
1,577,786	-		DDA3937_RS07030	0.59	-1.4
1,577,845	+		DDA3937_RS07030	0.63	-2.7
1,577,845	+		DDA3937_RS07030	0.63	+0.2
1,577,845	+		DDA3937_RS07030	0.63	-3.0
1,577,846	-		DDA3937_RS07030	0.63	+1.9
1,578,009	+		DDA3937_RS07030	0.72	+1.1
1,578,010	-		DDA3937_RS07030	0.72	-2.3
1,578,139	+		DDA3937_RS07030	0.79	-2.0
1,578,139	+		DDA3937_RS07030	0.79	-0.5
1,578,139	+		DDA3937_RS07030	0.79	-1.6
1,578,139	+		DDA3937_RS07030	0.79	-1.2
1,578,139	+		DDA3937_RS07030	0.79	+0.8
1,578,139	+		DDA3937_RS07030	0.79	+1.4
1,578,140	-		DDA3937_RS07030	0.79	-1.4
1,578,140	-		DDA3937_RS07030	0.79	+2.3
1,578,140	-		DDA3937_RS07030	0.79	+1.7
1,578,140	-		DDA3937_RS07030	0.79	+0.4
1,578,140	-		DDA3937_RS07030	0.79	-0.3
1,578,140	-		DDA3937_RS07030	0.79	-1.2
1,578,140	-		DDA3937_RS07030	0.79	+2.3
1,578,140	-		DDA3937_RS07030	0.79	+0.0
1,578,140	-		DDA3937_RS07030	0.79	-1.6
1,578,140	-		DDA3937_RS07030	0.79	+1.2
1,578,184	-		DDA3937_RS07030	0.82	+0.3
1,578,187	+		DDA3937_RS07030	0.82	+2.2
1,578,187	+		DDA3937_RS07030	0.82	-3.2
1,578,188	-		DDA3937_RS07030	0.82	+0.4
1,578,188	-		DDA3937_RS07030	0.82	-1.2
1,578,188	-		DDA3937_RS07030	0.82	-3.3
1,578,188	-		DDA3937_RS07030	0.82	-2.3
1,578,364	+				+0.4
1,578,364	+				-0.0
1,578,364	+				-2.1
1,578,364	+				+1.0
1,578,365	-				+0.0
1,578,365	-				-1.9
1,578,365	-				-1.1
1,578,403	+				+2.7
1,578,403	+				+0.5
1,578,403	+				-0.4
1,578,403	+				+1.1
1,578,404	-				-1.6
1,578,404	-				-3.2
1,578,404	-				-0.5
1,578,404	-				+2.2
1,578,482	+				-2.4
1,578,483	-				-2.3
1,578,502	+				-0.5
1,578,502	+				+0.9
1,578,502	+				-2.5
1,578,502	+				-2.1
1,578,502	+				-3.1
1,578,502	+				-3.0
1,578,502	+				-1.9
1,578,502	+				-1.1
1,578,502	+				-1.6
1,578,502	+				+0.4
1,578,502	+				+0.9
1,578,503	-				+1.2
1,578,503	-				+0.3
1,578,503	-				-2.0
1,578,503	-				-1.6
1,578,503	-				-2.9
1,578,769	-		DDA3937_RS07035	0.30	-3.0
1,578,771	+		DDA3937_RS07035	0.30	-1.2
1,578,772	-		DDA3937_RS07035	0.30	-0.1
1,578,772	-		DDA3937_RS07035	0.30	-2.0
1,578,772	-				-0.9
1,578,795	+		DDA3937_RS07035	0.32	-3.1
1,578,796	-		DDA3937_RS07035	0.32	-2.6
1,578,796	-		DDA3937_RS07035	0.32	-3.1
1,578,882	+		DDA3937_RS07035	0.41	+3.0
1,578,883	-		DDA3937_RS07035	0.41	-1.7
1,579,094	-		DDA3937_RS07035	0.62	-0.1
1,579,094	-		DDA3937_RS07035	0.62	-1.6
1,579,455	+				+1.0
1,579,455	+				-0.1
1,579,455	+				+0.1
1,579,479	+				-1.4
1,579,480	-				+3.3