Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06995

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,569,150	+		DDA3937_RS06990	0.70	-1.0
1,569,150	+		DDA3937_RS06990	0.70	+0.9
1,569,233	+		DDA3937_RS06990	0.76	-1.6
1,569,234	-				-0.9
1,569,320	+		DDA3937_RS06990	0.82	-0.1
1,569,320	+		DDA3937_RS06990	0.82	-0.6
1,569,328	+		DDA3937_RS06990	0.83	-0.7
1,569,374	+		DDA3937_RS06990	0.86	-1.3
1,569,381	-		DDA3937_RS06990	0.87	+1.7
1,569,460	-				+1.3
1,569,571	-				-1.7
1,569,656	+		DDA3937_RS22040	0.21	-0.6
1,569,699	-		DDA3937_RS22040	0.32	-0.1
1,569,742	-		DDA3937_RS22040	0.43	-2.7
1,569,765	+		DDA3937_RS22040	0.49	-2.7
1,569,899	+		DDA3937_RS22040	0.85	+2.1
1,569,912	+		DDA3937_RS22040	0.88	-0.4
1,569,918	+		DDA3937_RS22040	0.90	+2.1
1,569,941	+				-0.5
1,569,942	-				+0.9
1,569,943	+				-2.1
1,570,028	+				-2.2
1,570,251	-		DDA3937_RS06995	0.19	+0.6
1,570,397	+		DDA3937_RS06995	0.33	-1.6
1,570,397	+		DDA3937_RS06995	0.33	-2.4
1,570,397	+		DDA3937_RS06995	0.33	-2.0
1,570,397	+		DDA3937_RS06995	0.33	-0.9
1,570,397	+		DDA3937_RS06995	0.33	-0.2
1,570,397	+		DDA3937_RS06995	0.33	-0.7
1,570,397	+		DDA3937_RS06995	0.33	+1.1
1,570,400	-		DDA3937_RS06995	0.33	+1.8
1,570,502	-		DDA3937_RS06995	0.43	-2.6
1,570,502	-		DDA3937_RS06995	0.43	+0.7
1,570,502	-		DDA3937_RS06995	0.43	-0.8
1,570,527	-				+0.1
1,570,556	+		DDA3937_RS06995	0.48	-1.0
1,570,557	-		DDA3937_RS06995	0.49	-0.9
1,570,557	-		DDA3937_RS06995	0.49	-2.0
1,570,584	+				+1.4
1,570,584	+		DDA3937_RS06995	0.51	+0.0
1,570,584	+				-0.6
1,570,585	-		DDA3937_RS06995	0.51	-1.7
1,570,585	-		DDA3937_RS06995	0.51	-2.4
1,570,587	-		DDA3937_RS06995	0.51	-0.7
1,570,608	-		DDA3937_RS06995	0.53	-0.1
1,570,611	-		DDA3937_RS06995	0.54	-1.0
1,570,611	-		DDA3937_RS06995	0.54	-1.7
1,570,611	-		DDA3937_RS06995	0.54	+0.5
1,570,611	-		DDA3937_RS06995	0.54	+0.9
1,570,611	-		DDA3937_RS06995	0.54	+0.6
1,570,611	-		DDA3937_RS06995	0.54	-1.4
1,570,629	-		DDA3937_RS06995	0.55	-1.1
1,570,651	+		DDA3937_RS06995	0.58	-2.1
1,570,700	+		DDA3937_RS06995	0.62	-3.3
1,570,700	+		DDA3937_RS06995	0.62	+0.9
1,570,700	+		DDA3937_RS06995	0.62	-1.1
1,570,701	-		DDA3937_RS06995	0.62	-0.6
1,570,709	-		DDA3937_RS06995	0.63	+0.8
1,570,774	+		DDA3937_RS06995	0.69	-2.4
1,570,774	+		DDA3937_RS06995	0.69	-1.7
1,570,774	+		DDA3937_RS06995	0.69	+0.4
1,570,774	+		DDA3937_RS06995	0.69	-1.4
1,570,775	-		DDA3937_RS06995	0.69	-1.4
1,570,778	+		DDA3937_RS06995	0.70	-1.5
1,570,778	+		DDA3937_RS06995	0.70	-1.1
1,570,778	+		DDA3937_RS06995	0.70	+0.3
1,570,778	+		DDA3937_RS06995	0.70	-2.3
1,570,778	+		DDA3937_RS06995	0.70	-2.3
1,570,778	+		DDA3937_RS06995	0.70	-1.4
1,570,778	+		DDA3937_RS06995	0.70	+0.1
1,570,778	+		DDA3937_RS06995	0.70	-2.9
1,570,778	+		DDA3937_RS06995	0.70	-2.0
1,570,779	-		DDA3937_RS06995	0.70	-0.6
1,570,779	-		DDA3937_RS06995	0.70	-2.1
1,570,779	-		DDA3937_RS06995	0.70	-0.1
1,570,780	+		DDA3937_RS06995	0.70	-0.1
1,570,780	+		DDA3937_RS06995	0.70	-1.6
1,570,781	-		DDA3937_RS06995	0.70	+2.6
1,570,781	-		DDA3937_RS06995	0.70	+0.3
1,570,823	-		DDA3937_RS06995	0.74	-0.9
1,570,824	+		DDA3937_RS06995	0.74	-1.0
1,570,824	+		DDA3937_RS06995	0.74	-1.6
1,570,825	-		DDA3937_RS06995	0.74	-0.8
1,570,825	-		DDA3937_RS06995	0.74	-1.7
1,570,825	-		DDA3937_RS06995	0.74	+1.8
1,570,825	-		DDA3937_RS06995	0.74	-0.1
1,570,835	-		DDA3937_RS06995	0.75	-2.0
1,570,894	+		DDA3937_RS06995	0.81	+0.5
1,570,895	-		DDA3937_RS06995	0.81	-0.9
1,570,895	-				-0.9
1,570,895	-		DDA3937_RS06995	0.81	-0.8
1,570,895	-		DDA3937_RS06995	0.81	-2.4
1,570,948	+		DDA3937_RS06995	0.86	-2.0
1,570,948	+		DDA3937_RS06995	0.86	+0.5
1,570,982	-		DDA3937_RS06995	0.89	-1.4
1,571,002	+				-0.2
1,571,100	+				-2.4
1,571,293	+		DDA3937_RS07000	0.55	-1.6
1,571,407	+		DDA3937_RS07000	0.87	-1.7
1,571,473	-				-2.0
1,571,473	-				-1.0
1,571,473	-				-0.9
1,571,493	-				-0.1
1,571,514	+				-1.0
1,571,573	+		DDA3937_RS07005	0.22	-2.7
1,571,573	+				-0.6
1,571,574	-		DDA3937_RS07005	0.22	-0.9
1,571,574	-		DDA3937_RS07005	0.22	-1.8
1,571,574	-		DDA3937_RS07005	0.22	-2.6
1,571,727	+				-1.9
1,571,727	+				+1.8
1,571,728	-				+2.1
1,571,731	-				-0.1
1,571,731	-				+0.3
1,571,731	-				-1.7
1,571,731	-				+0.1
1,571,731	-				-0.6
1,571,731	-				-3.2
1,571,733	+				-3.0
1,571,733	+				-1.1
1,571,733	+				-2.4
1,571,733	+				-0.1
1,571,734	-				+0.0
1,571,734	-				-2.1
1,571,734	-				-0.2
1,571,734	-				+2.7
1,571,734	-				-1.9
1,571,734	-				-0.8
1,571,737	+				-0.8
1,571,737	+				-1.1
1,571,738	-				-0.1
1,571,749	-				-1.9
1,571,781	-				-0.9
1,571,781	-				+2.5
1,571,781	-				+0.9
1,571,782	+				+2.9
1,571,782	+				-2.5
1,571,782	+				-2.3
1,571,782	+				-1.1
1,571,782	+				+0.1
1,571,782	+				-3.0
1,571,783	-				-0.3
1,571,783	-				-1.9
1,571,783	-				-0.6
1,571,783	-				-2.4
1,571,783	-				+1.0
1,571,786	-				-2.3
1,571,794	-				-1.7
1,571,794	-				-0.6
1,571,815	+				-2.3
1,571,816	-				-1.1
1,571,952	+				-0.1
1,571,952	+				+0.2
1,571,952	+				-2.4
1,571,953	-				-3.0
1,571,953	-				-3.5
1,571,997	+				+0.9
1,571,998	-				-1.4
1,571,998	-				+1.7
1,572,071	+				-0.9
1,572,071	+				+2.0
1,572,071	+				-2.4
1,572,071	+				-0.9
1,572,071	+				+1.4
1,572,071	+				-1.4
1,572,071	+				-1.6
1,572,071	+				+1.2
1,572,071	+				-0.4
1,572,071	+				-0.9
1,572,072	-				-1.9
1,572,072	-				+0.4
1,572,075	+				-1.7
1,572,075	+				-1.9
1,572,075	+				-2.3
1,572,075	+				-2.0
1,572,075	+				+0.3
1,572,076	-				-0.6
1,572,076	-				-1.4
1,572,076	-				-1.6
1,572,076	-				-1.1
1,572,076	-				-1.1