Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06700

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06690 and DDA3937_RS06695 are separated by 101 nucleotidesDDA3937_RS06695 and DDA3937_RS06700 are separated by 32 nucleotidesDDA3937_RS06700 and DDA3937_RS06705 are separated by 84 nucleotides DDA3937_RS06690: DDA3937_RS06690 - uridine kinase, at 1,493,054 to 1,493,695 _RS06690 DDA3937_RS06695: DDA3937_RS06695 - dCTP deaminase, at 1,493,797 to 1,494,378 _RS06695 DDA3937_RS06700: DDA3937_RS06700 - outer membrane assembly protein AsmA, at 1,494,411 to 1,496,225 _RS06700 DDA3937_RS06705: DDA3937_RS06705 - TerC family protein, at 1,496,310 to 1,497,899 _RS06705 Position (kb) 1494 1495 1496 1497Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1493.555 kb on + strand, within DDA3937_RS06690at 1493.555 kb on + strand, within DDA3937_RS06690at 1493.555 kb on + strand, within DDA3937_RS06690at 1493.555 kb on + strand, within DDA3937_RS06690at 1493.555 kb on + strand, within DDA3937_RS06690at 1493.555 kb on + strand, within DDA3937_RS06690at 1493.555 kb on + strand, within DDA3937_RS06690at 1493.556 kb on - strand, within DDA3937_RS06690at 1493.556 kb on - strand, within DDA3937_RS06690at 1493.556 kb on - strand, within DDA3937_RS06690at 1493.556 kb on - strand, within DDA3937_RS06690at 1493.556 kb on - strand, within DDA3937_RS06690at 1493.609 kb on + strand, within DDA3937_RS06690at 1493.609 kb on + strand, within DDA3937_RS06690at 1493.610 kb on - strand, within DDA3937_RS06690at 1493.660 kb on - strandat 1493.694 kb on - strandat 1493.700 kb on + strandat 1493.721 kb on + strandat 1493.721 kb on + strandat 1493.722 kb on - strandat 1493.722 kb on - strandat 1493.722 kb on - strandat 1493.740 kb on - strandat 1493.740 kb on - strandat 1493.740 kb on - strandat 1494.099 kb on + strand, within DDA3937_RS06695at 1494.215 kb on - strand, within DDA3937_RS06695at 1494.253 kb on - strand, within DDA3937_RS06695at 1494.253 kb on - strand, within DDA3937_RS06695at 1494.307 kb on + strand, within DDA3937_RS06695at 1494.308 kb on - strand, within DDA3937_RS06695at 1494.308 kb on - strand, within DDA3937_RS06695at 1494.308 kb on - strand, within DDA3937_RS06695at 1494.308 kb on - strand, within DDA3937_RS06695at 1494.308 kb on - strand, within DDA3937_RS06695at 1494.309 kb on + strand, within DDA3937_RS06695at 1494.331 kb on + strandat 1494.331 kb on + strandat 1494.332 kb on - strandat 1494.376 kb on + strandat 1494.449 kb on - strandat 1494.510 kb on + strandat 1494.510 kb on + strandat 1494.510 kb on + strandat 1494.510 kb on + strandat 1494.511 kb on - strandat 1494.511 kb on - strandat 1494.511 kb on - strandat 1494.512 kb on + strandat 1494.512 kb on + strandat 1494.512 kb on + strandat 1494.512 kb on + strandat 1494.513 kb on - strandat 1494.513 kb on - strandat 1494.513 kb on - strandat 1495.038 kb on + strand, within DDA3937_RS06700at 1495.038 kb on + strand, within DDA3937_RS06700at 1495.039 kb on - strand, within DDA3937_RS06700at 1495.077 kb on + strand, within DDA3937_RS06700at 1495.143 kb on + strand, within DDA3937_RS06700at 1495.196 kb on + strand, within DDA3937_RS06700at 1495.248 kb on + strand, within DDA3937_RS06700at 1495.248 kb on + strand, within DDA3937_RS06700at 1495.248 kb on + strand, within DDA3937_RS06700at 1495.249 kb on - strand, within DDA3937_RS06700at 1495.249 kb on - strand, within DDA3937_RS06700at 1495.249 kb on - strand, within DDA3937_RS06700at 1495.249 kb on - strand, within DDA3937_RS06700at 1495.249 kb on - strand, within DDA3937_RS06700at 1495.249 kb on - strand, within DDA3937_RS06700at 1495.386 kb on + strand, within DDA3937_RS06700at 1495.386 kb on + strand, within DDA3937_RS06700at 1495.387 kb on - strand, within DDA3937_RS06700at 1495.434 kb on + strand, within DDA3937_RS06700at 1495.434 kb on + strand, within DDA3937_RS06700at 1495.434 kb on - strand, within DDA3937_RS06700at 1495.434 kb on - strand, within DDA3937_RS06700at 1495.451 kb on + strand, within DDA3937_RS06700at 1495.854 kb on + strand, within DDA3937_RS06700at 1495.855 kb on - strand, within DDA3937_RS06700at 1495.997 kb on + strand, within DDA3937_RS06700at 1495.998 kb on - strand, within DDA3937_RS06700at 1495.998 kb on - strand, within DDA3937_RS06700at 1496.067 kb on - strandat 1496.355 kb on + strandat 1496.355 kb on + strandat 1496.355 kb on + strandat 1496.356 kb on - strandat 1496.356 kb on - strandat 1496.356 kb on - strandat 1496.402 kb on + strandat 1496.403 kb on - strandat 1496.449 kb on + strandat 1496.450 kb on - strandat 1496.450 kb on - strandat 1496.479 kb on + strand, within DDA3937_RS06705at 1496.480 kb on - strand, within DDA3937_RS06705at 1496.480 kb on - strand, within DDA3937_RS06705at 1496.480 kb on - strand, within DDA3937_RS06705at 1496.497 kb on - strand, within DDA3937_RS06705at 1496.497 kb on - strand, within DDA3937_RS06705at 1496.510 kb on + strandat 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.512 kb on + strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strandat 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.513 kb on - strand, within DDA3937_RS06705at 1496.520 kb on + strand, within DDA3937_RS06705at 1496.520 kb on + strand, within DDA3937_RS06705at 1496.520 kb on + strand, within DDA3937_RS06705at 1496.521 kb on - strand, within DDA3937_RS06705at 1496.539 kb on + strand, within DDA3937_RS06705at 1496.540 kb on - strand, within DDA3937_RS06705

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,493,555 + DDA3937_RS06690 0.78 +1.6
1,493,555 + DDA3937_RS06690 0.78 +0.2
1,493,555 + DDA3937_RS06690 0.78 +0.4
1,493,555 + DDA3937_RS06690 0.78 +2.9
1,493,555 + DDA3937_RS06690 0.78 -1.4
1,493,555 + DDA3937_RS06690 0.78 -0.8
1,493,555 + DDA3937_RS06690 0.78 -1.7
1,493,556 - DDA3937_RS06690 0.78 -1.1
1,493,556 - DDA3937_RS06690 0.78 +1.3
1,493,556 - DDA3937_RS06690 0.78 -0.6
1,493,556 - DDA3937_RS06690 0.78 +1.2
1,493,556 - DDA3937_RS06690 0.78 +1.2
1,493,609 + DDA3937_RS06690 0.86 +1.8
1,493,609 + DDA3937_RS06690 0.86 -0.1
1,493,610 - DDA3937_RS06690 0.87 -0.6
1,493,660 - +0.6
1,493,694 - -1.1
1,493,700 + -0.9
1,493,721 + +0.8
1,493,721 + -0.6
1,493,722 - -2.9
1,493,722 - +0.0
1,493,722 - +1.3
1,493,740 - -0.6
1,493,740 - -1.6
1,493,740 - -2.5
1,494,099 + DDA3937_RS06695 0.52 -3.0
1,494,215 - DDA3937_RS06695 0.72 -3.0
1,494,253 - DDA3937_RS06695 0.78 -1.6
1,494,253 - DDA3937_RS06695 0.78 -0.3
1,494,307 + DDA3937_RS06695 0.88 -1.9
1,494,308 - DDA3937_RS06695 0.88 +0.3
1,494,308 - DDA3937_RS06695 0.88 -3.1
1,494,308 - DDA3937_RS06695 0.88 +0.6
1,494,308 - DDA3937_RS06695 0.88 +0.4
1,494,308 - DDA3937_RS06695 0.88 -1.5
1,494,309 + DDA3937_RS06695 0.88 -1.1
1,494,331 + -1.2
1,494,331 + -2.0
1,494,332 - +0.7
1,494,376 + +0.4
1,494,449 - -1.4
1,494,510 + -1.1
1,494,510 + +2.9
1,494,510 + +2.5
1,494,510 + +1.8
1,494,511 - +1.2
1,494,511 - -1.1
1,494,511 - -1.6
1,494,512 + +1.7
1,494,512 + -2.5
1,494,512 + -0.3
1,494,512 + +2.5
1,494,513 - +2.1
1,494,513 - +0.4
1,494,513 - -2.7
1,495,038 + DDA3937_RS06700 0.35 -2.8
1,495,038 + DDA3937_RS06700 0.35 +4.1
1,495,039 - DDA3937_RS06700 0.35 +0.8
1,495,077 + DDA3937_RS06700 0.37 +1.2
1,495,143 + DDA3937_RS06700 0.40 +1.8
1,495,196 + DDA3937_RS06700 0.43 -1.4
1,495,248 + DDA3937_RS06700 0.46 -2.7
1,495,248 + DDA3937_RS06700 0.46 +0.3
1,495,248 + DDA3937_RS06700 0.46 -0.1
1,495,249 - DDA3937_RS06700 0.46 -0.6
1,495,249 - DDA3937_RS06700 0.46 +0.8
1,495,249 - DDA3937_RS06700 0.46 +1.3
1,495,249 - DDA3937_RS06700 0.46 +1.1
1,495,249 - DDA3937_RS06700 0.46 -2.0
1,495,249 - DDA3937_RS06700 0.46 +1.0
1,495,386 + DDA3937_RS06700 0.54 -0.8
1,495,386 + DDA3937_RS06700 0.54 +0.9
1,495,387 - DDA3937_RS06700 0.54 +0.4
1,495,434 + DDA3937_RS06700 0.56 +1.7
1,495,434 + DDA3937_RS06700 0.56 +1.8
1,495,434 - DDA3937_RS06700 0.56 -1.8
1,495,434 - DDA3937_RS06700 0.56 +2.2
1,495,451 + DDA3937_RS06700 0.57 +2.9
1,495,854 + DDA3937_RS06700 0.80 +0.9
1,495,855 - DDA3937_RS06700 0.80 +0.6
1,495,997 + DDA3937_RS06700 0.87 -3.3
1,495,998 - DDA3937_RS06700 0.87 +0.5
1,495,998 - DDA3937_RS06700 0.87 +0.5
1,496,067 - -1.4
1,496,355 + +1.9
1,496,355 + +3.1
1,496,355 + +1.9
1,496,356 - -1.1
1,496,356 - +0.1
1,496,356 - +3.0
1,496,402 + +1.4
1,496,403 - +1.0
1,496,449 + -0.6
1,496,450 - +2.7
1,496,450 - +1.6
1,496,479 + DDA3937_RS06705 0.11 -1.8
1,496,480 - DDA3937_RS06705 0.11 +2.8
1,496,480 - DDA3937_RS06705 0.11 +1.7
1,496,480 - DDA3937_RS06705 0.11 +2.3
1,496,497 - DDA3937_RS06705 0.12 +4.0
1,496,497 - DDA3937_RS06705 0.12 +1.6
1,496,510 + -0.1
1,496,512 + DDA3937_RS06705 0.13 +2.0
1,496,512 + DDA3937_RS06705 0.13 +1.0
1,496,512 + DDA3937_RS06705 0.13 +1.4
1,496,512 + DDA3937_RS06705 0.13 +1.4
1,496,512 + DDA3937_RS06705 0.13 -1.6
1,496,512 + DDA3937_RS06705 0.13 +3.6
1,496,512 + DDA3937_RS06705 0.13 -1.1
1,496,512 + DDA3937_RS06705 0.13 +1.3
1,496,512 + DDA3937_RS06705 0.13 -0.6
1,496,512 + DDA3937_RS06705 0.13 +2.4
1,496,512 + DDA3937_RS06705 0.13 +1.6
1,496,513 - DDA3937_RS06705 0.13 +1.3
1,496,513 - DDA3937_RS06705 0.13 +3.0
1,496,513 - DDA3937_RS06705 0.13 +2.0
1,496,513 - DDA3937_RS06705 0.13 +2.9
1,496,513 - DDA3937_RS06705 0.13 +2.3
1,496,513 - DDA3937_RS06705 0.13 -0.3
1,496,513 - DDA3937_RS06705 0.13 +2.5
1,496,513 - +3.0
1,496,513 - DDA3937_RS06705 0.13 -1.1
1,496,513 - DDA3937_RS06705 0.13 +2.1
1,496,513 - DDA3937_RS06705 0.13 +2.0
1,496,513 - DDA3937_RS06705 0.13 +1.7
1,496,513 - DDA3937_RS06705 0.13 -2.4
1,496,513 - DDA3937_RS06705 0.13 +1.0
1,496,513 - DDA3937_RS06705 0.13 +1.6
1,496,513 - DDA3937_RS06705 0.13 +1.5
1,496,520 + DDA3937_RS06705 0.13 +0.7
1,496,520 + DDA3937_RS06705 0.13 -0.3
1,496,520 + DDA3937_RS06705 0.13 +0.9
1,496,521 - DDA3937_RS06705 0.13 +0.0
1,496,539 + DDA3937_RS06705 0.14 +0.6
1,496,540 - DDA3937_RS06705 0.14 +1.3

Or see this region's nucleotide sequence