Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06620 and DDA3937_RS06625 are separated by 87 nucleotides DDA3937_RS06625 and DDA3937_RS22030 are separated by 197 nucleotides DDA3937_RS22030 and DDA3937_RS06635 are separated by 169 nucleotides
DDA3937_RS06620: DDA3937_RS06620 - molybdate ABC transporter ATP-binding protein ModF, at 1,478,494 to 1,479,963
_RS06620
DDA3937_RS06625: DDA3937_RS06625 - molybdenum-dependent transcriptional regulator, at 1,480,051 to 1,480,842
_RS06625
DDA3937_RS22030: DDA3937_RS22030 - multidrug efflux pump-associated protein, AcrZ family, at 1,481,040 to 1,481,189
_RS22030
DDA3937_RS06635: DDA3937_RS06635 - molybdate ABC transporter substrate-binding protein, at 1,481,359 to 1,482,144
_RS06635
Position (kb) 1480
1481 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1479.054 kb on + strand, within DDA3937_RS06620 at 1479.155 kb on + strand, within DDA3937_RS06620 at 1479.156 kb on - strand, within DDA3937_RS06620 at 1479.330 kb on + strand, within DDA3937_RS06620 at 1479.331 kb on - strand, within DDA3937_RS06620 at 1479.331 kb on - strand, within DDA3937_RS06620 at 1479.373 kb on - strand, within DDA3937_RS06620 at 1479.560 kb on + strand, within DDA3937_RS06620 at 1479.560 kb on + strand, within DDA3937_RS06620 at 1479.560 kb on + strand, within DDA3937_RS06620 at 1479.561 kb on - strand, within DDA3937_RS06620 at 1479.561 kb on - strand, within DDA3937_RS06620 at 1479.561 kb on - strand, within DDA3937_RS06620 at 1479.561 kb on - strand at 1479.991 kb on + strand at 1480.005 kb on - strand at 1480.097 kb on + strand at 1480.097 kb on + strand at 1480.117 kb on + strand at 1480.117 kb on + strand at 1480.118 kb on - strand at 1480.132 kb on + strand, within DDA3937_RS06625 at 1480.133 kb on - strand, within DDA3937_RS06625 at 1480.133 kb on - strand, within DDA3937_RS06625 at 1480.133 kb on - strand, within DDA3937_RS06625 at 1480.299 kb on + strand, within DDA3937_RS06625 at 1480.299 kb on + strand, within DDA3937_RS06625 at 1480.300 kb on - strand, within DDA3937_RS06625 at 1480.303 kb on + strand, within DDA3937_RS06625 at 1480.304 kb on - strand, within DDA3937_RS06625 at 1480.401 kb on + strand, within DDA3937_RS06625 at 1480.401 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.405 kb on + strand, within DDA3937_RS06625 at 1480.406 kb on - strand, within DDA3937_RS06625 at 1480.406 kb on - strand, within DDA3937_RS06625 at 1480.406 kb on - strand, within DDA3937_RS06625 at 1480.406 kb on - strand, within DDA3937_RS06625 at 1480.406 kb on - strand, within DDA3937_RS06625 at 1480.406 kb on - strand, within DDA3937_RS06625 at 1480.406 kb on - strand, within DDA3937_RS06625 at 1480.406 kb on - strand, within DDA3937_RS06625 at 1480.513 kb on + strand, within DDA3937_RS06625 at 1480.514 kb on - strand, within DDA3937_RS06625 at 1480.514 kb on - strand, within DDA3937_RS06625 at 1480.514 kb on - strand, within DDA3937_RS06625 at 1480.537 kb on + strand, within DDA3937_RS06625 at 1480.537 kb on + strand, within DDA3937_RS06625 at 1480.537 kb on + strand, within DDA3937_RS06625 at 1480.538 kb on - strand, within DDA3937_RS06625 at 1480.538 kb on - strand, within DDA3937_RS06625 at 1480.538 kb on - strand, within DDA3937_RS06625 at 1480.577 kb on + strand, within DDA3937_RS06625 at 1480.577 kb on + strand, within DDA3937_RS06625 at 1480.577 kb on + strand, within DDA3937_RS06625 at 1480.577 kb on + strand, within DDA3937_RS06625 at 1480.578 kb on - strand, within DDA3937_RS06625 at 1480.578 kb on - strand, within DDA3937_RS06625 at 1480.578 kb on - strand, within DDA3937_RS06625 at 1480.578 kb on - strand, within DDA3937_RS06625 at 1480.578 kb on - strand, within DDA3937_RS06625 at 1480.709 kb on + strand, within DDA3937_RS06625 at 1480.710 kb on - strand, within DDA3937_RS06625 at 1480.710 kb on - strand, within DDA3937_RS06625 at 1480.876 kb on + strand at 1480.876 kb on + strand at 1480.876 kb on + strand at 1480.926 kb on - strand at 1480.943 kb on + strand at 1480.959 kb on + strand at 1480.969 kb on - strand at 1480.973 kb on + strand at 1480.973 kb on + strand at 1480.973 kb on + strand at 1480.973 kb on + strand at 1480.973 kb on + strand at 1480.973 kb on + strand at 1480.973 kb on + strand at 1480.973 kb on + strand at 1480.974 kb on - strand at 1480.974 kb on - strand at 1480.974 kb on - strand at 1480.974 kb on - strand at 1480.974 kb on - strand at 1480.974 kb on - strand at 1480.978 kb on + strand at 1480.979 kb on - strand at 1481.019 kb on - strand at 1481.039 kb on + strand at 1481.118 kb on + strand, within DDA3937_RS22030 at 1481.118 kb on + strand, within DDA3937_RS22030 at 1481.119 kb on - strand, within DDA3937_RS22030 at 1481.119 kb on - strand, within DDA3937_RS22030 at 1481.187 kb on + strand at 1481.247 kb on - strand at 1481.262 kb on + strand at 1481.262 kb on + strand at 1481.263 kb on - strand at 1481.263 kb on - strand at 1481.279 kb on + strand at 1481.311 kb on - strand at 1481.311 kb on - strand at 1481.332 kb on + strand at 1481.377 kb on + strand at 1481.377 kb on + strand at 1481.378 kb on - strand at 1481.378 kb on - strand at 1481.422 kb on - strand at 1481.422 kb on - strand at 1481.444 kb on + strand, within DDA3937_RS06635 at 1481.472 kb on + strand, within DDA3937_RS06635 at 1481.472 kb on + strand, within DDA3937_RS06635 at 1481.500 kb on + strand, within DDA3937_RS06635 at 1481.536 kb on + strand, within DDA3937_RS06635 at 1481.536 kb on + strand, within DDA3937_RS06635 at 1481.536 kb on + strand, within DDA3937_RS06635 at 1481.536 kb on + strand, within DDA3937_RS06635 at 1481.623 kb on + strand, within DDA3937_RS06635 at 1481.623 kb on + strand, within DDA3937_RS06635 at 1481.663 kb on - strand, within DDA3937_RS06635 at 1481.663 kb on - strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.812 kb on + strand, within DDA3937_RS06635 at 1481.813 kb on - strand, within DDA3937_RS06635 at 1481.813 kb on - strand, within DDA3937_RS06635
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,479,054 + DDA3937_RS06620 0.38 -0.9 1,479,155 + DDA3937_RS06620 0.45 -1.2 1,479,156 - DDA3937_RS06620 0.45 +2.0 1,479,330 + DDA3937_RS06620 0.57 -1.4 1,479,331 - DDA3937_RS06620 0.57 -0.9 1,479,331 - DDA3937_RS06620 0.57 +0.8 1,479,373 - DDA3937_RS06620 0.60 -0.6 1,479,560 + DDA3937_RS06620 0.73 -2.2 1,479,560 + DDA3937_RS06620 0.73 +1.2 1,479,560 + DDA3937_RS06620 0.73 -1.9 1,479,561 - DDA3937_RS06620 0.73 -1.2 1,479,561 - DDA3937_RS06620 0.73 -0.9 1,479,561 - DDA3937_RS06620 0.73 -0.9 1,479,561 - +0.4 1,479,991 + -1.9 1,480,005 - +2.0 1,480,097 + -1.6 1,480,097 + -2.8 1,480,117 + -0.2 1,480,117 + +0.9 1,480,118 - +0.9 1,480,132 + DDA3937_RS06625 0.10 -2.0 1,480,133 - DDA3937_RS06625 0.10 -1.9 1,480,133 - DDA3937_RS06625 0.10 +1.6 1,480,133 - DDA3937_RS06625 0.10 +2.6 1,480,299 + DDA3937_RS06625 0.31 +0.6 1,480,299 + DDA3937_RS06625 0.31 +0.5 1,480,300 - DDA3937_RS06625 0.31 +3.1 1,480,303 + DDA3937_RS06625 0.32 +0.2 1,480,304 - DDA3937_RS06625 0.32 +1.3 1,480,401 + DDA3937_RS06625 0.44 +0.0 1,480,401 + DDA3937_RS06625 0.44 +0.7 1,480,405 + DDA3937_RS06625 0.45 +1.2 1,480,405 + DDA3937_RS06625 0.45 +0.6 1,480,405 + DDA3937_RS06625 0.45 +2.3 1,480,405 + DDA3937_RS06625 0.45 -0.7 1,480,405 + DDA3937_RS06625 0.45 +3.0 1,480,405 + DDA3937_RS06625 0.45 +1.6 1,480,405 + DDA3937_RS06625 0.45 +0.7 1,480,405 + DDA3937_RS06625 0.45 +2.0 1,480,405 + DDA3937_RS06625 0.45 +0.3 1,480,405 + DDA3937_RS06625 0.45 -1.7 1,480,405 + DDA3937_RS06625 0.45 +3.1 1,480,405 + DDA3937_RS06625 0.45 -0.4 1,480,406 - DDA3937_RS06625 0.45 +1.7 1,480,406 - DDA3937_RS06625 0.45 +2.2 1,480,406 - DDA3937_RS06625 0.45 +1.6 1,480,406 - DDA3937_RS06625 0.45 +3.1 1,480,406 - DDA3937_RS06625 0.45 +1.5 1,480,406 - DDA3937_RS06625 0.45 +1.4 1,480,406 - DDA3937_RS06625 0.45 +4.2 1,480,406 - DDA3937_RS06625 0.45 +1.4 1,480,513 + DDA3937_RS06625 0.58 +2.3 1,480,514 - DDA3937_RS06625 0.58 -0.3 1,480,514 - DDA3937_RS06625 0.58 -1.2 1,480,514 - DDA3937_RS06625 0.58 +0.1 1,480,537 + DDA3937_RS06625 0.61 +0.3 1,480,537 + DDA3937_RS06625 0.61 +1.0 1,480,537 + DDA3937_RS06625 0.61 +1.2 1,480,538 - DDA3937_RS06625 0.61 +1.3 1,480,538 - DDA3937_RS06625 0.61 -1.3 1,480,538 - DDA3937_RS06625 0.61 +0.8 1,480,577 + DDA3937_RS06625 0.66 +1.2 1,480,577 + DDA3937_RS06625 0.66 +1.2 1,480,577 + DDA3937_RS06625 0.66 +1.7 1,480,577 + DDA3937_RS06625 0.66 -0.6 1,480,578 - DDA3937_RS06625 0.67 +2.1 1,480,578 - DDA3937_RS06625 0.67 +1.5 1,480,578 - DDA3937_RS06625 0.67 -2.3 1,480,578 - DDA3937_RS06625 0.67 +2.0 1,480,578 - DDA3937_RS06625 0.67 +0.6 1,480,709 + DDA3937_RS06625 0.83 +3.7 1,480,710 - DDA3937_RS06625 0.83 -1.2 1,480,710 - DDA3937_RS06625 0.83 -1.9 1,480,876 + +1.7 1,480,876 + +0.5 1,480,876 + +0.9 1,480,926 - -2.9 1,480,943 + -0.1 1,480,959 + +0.4 1,480,969 - +0.2 1,480,973 + +1.0 1,480,973 + -2.5 1,480,973 + +0.6 1,480,973 + +0.3 1,480,973 + +0.5 1,480,973 + -0.9 1,480,973 + -2.4 1,480,973 + -1.2 1,480,974 - +1.4 1,480,974 - -1.2 1,480,974 - +0.2 1,480,974 - -1.4 1,480,974 - -2.3 1,480,974 - -0.9 1,480,978 + +0.2 1,480,979 - -0.2 1,481,019 - +0.1 1,481,039 + +0.9 1,481,118 + DDA3937_RS22030 0.52 -0.2 1,481,118 + DDA3937_RS22030 0.52 -3.5 1,481,119 - DDA3937_RS22030 0.53 -0.4 1,481,119 - DDA3937_RS22030 0.53 -2.7 1,481,187 + -2.3 1,481,247 - -1.9 1,481,262 + -1.7 1,481,262 + -0.2 1,481,263 - -0.3 1,481,263 - +0.0 1,481,279 + -2.9 1,481,311 - +1.8 1,481,311 - +0.3 1,481,332 + -1.2 1,481,377 + -3.8 1,481,377 + -1.2 1,481,378 - -4.4 1,481,378 - -2.2 1,481,422 - -1.4 1,481,422 - +0.6 1,481,444 + DDA3937_RS06635 0.11 +0.3 1,481,472 + DDA3937_RS06635 0.14 +2.4 1,481,472 + DDA3937_RS06635 0.14 +0.8 1,481,500 + DDA3937_RS06635 0.18 -1.0 1,481,536 + DDA3937_RS06635 0.23 +0.0 1,481,536 + DDA3937_RS06635 0.23 +1.6 1,481,536 + DDA3937_RS06635 0.23 -2.4 1,481,536 + DDA3937_RS06635 0.23 +2.0 1,481,623 + DDA3937_RS06635 0.34 -1.7 1,481,623 + DDA3937_RS06635 0.34 +0.5 1,481,663 - DDA3937_RS06635 0.39 -1.3 1,481,663 - DDA3937_RS06635 0.39 -1.0 1,481,812 + DDA3937_RS06635 0.58 +0.6 1,481,812 + DDA3937_RS06635 0.58 -2.0 1,481,812 + DDA3937_RS06635 0.58 -2.3 1,481,812 + DDA3937_RS06635 0.58 -2.4 1,481,812 + DDA3937_RS06635 0.58 +0.6 1,481,812 + DDA3937_RS06635 0.58 -1.4 1,481,812 + DDA3937_RS06635 0.58 -1.2 1,481,812 + DDA3937_RS06635 0.58 -0.4 1,481,812 + DDA3937_RS06635 0.58 +0.2 1,481,813 - DDA3937_RS06635 0.58 +1.2 1,481,813 - DDA3937_RS06635 0.58 +2.2
Or see this region's nucleotide sequence