Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06425 and DDA3937_RS06430 are separated by 11 nucleotides DDA3937_RS06430 and DDA3937_RS06435 are separated by 105 nucleotides DDA3937_RS06435 and DDA3937_RS06440 are separated by 647 nucleotides
DDA3937_RS06425: DDA3937_RS06425 - 5-oxoprolinase subunit PxpA, at 1,435,103 to 1,435,840
_RS06425
DDA3937_RS06430: DDA3937_RS06430 - endonuclease VIII, at 1,435,852 to 1,436,640
_RS06430
DDA3937_RS06435: DDA3937_RS06435 - citrate synthase, at 1,436,746 to 1,438,032
_RS06435
DDA3937_RS06440: DDA3937_RS06440 - succinate dehydrogenase cytochrome b556 subunit, at 1,438,680 to 1,439,069
_RS06440
Position (kb) 1436
1437
1438
1439 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 1435.821 kb on + strand at 1435.849 kb on - strand at 1435.849 kb on - strand at 1435.849 kb on - strand at 1435.849 kb on - strand at 1435.849 kb on - strand at 1435.904 kb on + strand at 1435.920 kb on - strand at 1435.992 kb on + strand, within DDA3937_RS06430 at 1435.993 kb on - strand, within DDA3937_RS06430 at 1436.047 kb on + strand, within DDA3937_RS06430 at 1436.047 kb on + strand, within DDA3937_RS06430 at 1436.047 kb on + strand, within DDA3937_RS06430 at 1436.047 kb on + strand, within DDA3937_RS06430 at 1436.048 kb on - strand, within DDA3937_RS06430 at 1436.048 kb on - strand, within DDA3937_RS06430 at 1436.048 kb on - strand, within DDA3937_RS06430 at 1436.048 kb on - strand, within DDA3937_RS06430 at 1436.048 kb on - strand, within DDA3937_RS06430 at 1436.048 kb on - strand at 1436.048 kb on - strand, within DDA3937_RS06430 at 1436.055 kb on + strand, within DDA3937_RS06430 at 1436.056 kb on - strand, within DDA3937_RS06430 at 1436.065 kb on + strand, within DDA3937_RS06430 at 1436.082 kb on - strand, within DDA3937_RS06430 at 1436.126 kb on + strand, within DDA3937_RS06430 at 1436.126 kb on + strand, within DDA3937_RS06430 at 1436.126 kb on + strand, within DDA3937_RS06430 at 1436.127 kb on - strand, within DDA3937_RS06430 at 1436.127 kb on - strand, within DDA3937_RS06430 at 1436.139 kb on + strand, within DDA3937_RS06430 at 1436.156 kb on - strand, within DDA3937_RS06430 at 1436.156 kb on - strand, within DDA3937_RS06430 at 1436.175 kb on + strand, within DDA3937_RS06430 at 1436.175 kb on + strand, within DDA3937_RS06430 at 1436.176 kb on - strand, within DDA3937_RS06430 at 1436.310 kb on + strand, within DDA3937_RS06430 at 1436.353 kb on + strand, within DDA3937_RS06430 at 1436.353 kb on + strand, within DDA3937_RS06430 at 1436.439 kb on - strand, within DDA3937_RS06430 at 1436.439 kb on - strand, within DDA3937_RS06430 at 1436.473 kb on + strand, within DDA3937_RS06430 at 1436.522 kb on + strand, within DDA3937_RS06430 at 1436.523 kb on - strand, within DDA3937_RS06430 at 1436.523 kb on - strand, within DDA3937_RS06430 at 1436.580 kb on + strand at 1436.581 kb on - strand at 1436.581 kb on - strand at 1436.615 kb on - strand at 1436.615 kb on - strand at 1436.641 kb on + strand at 1436.642 kb on - strand at 1436.642 kb on - strand at 1437.211 kb on - strand, within DDA3937_RS06435 at 1437.405 kb on - strand, within DDA3937_RS06435 at 1438.117 kb on - strand at 1438.117 kb on - strand at 1438.117 kb on - strand at 1438.229 kb on - strand at 1438.255 kb on - strand at 1438.257 kb on + strand at 1438.295 kb on - strand at 1438.295 kb on - strand at 1438.336 kb on - strand at 1438.362 kb on - strand at 1438.362 kb on - strand at 1438.404 kb on - strand at 1438.413 kb on + strand at 1438.414 kb on - strand at 1438.414 kb on - strand at 1438.436 kb on - strand at 1438.472 kb on + strand at 1438.472 kb on + strand at 1438.473 kb on - strand at 1438.473 kb on - strand at 1438.483 kb on + strand at 1438.483 kb on + strand at 1438.483 kb on + strand at 1438.483 kb on + strand at 1438.483 kb on + strand at 1438.483 kb on + strand at 1438.484 kb on - strand at 1438.484 kb on - strand at 1438.484 kb on - strand at 1438.486 kb on + strand at 1438.487 kb on - strand at 1438.503 kb on + strand at 1438.503 kb on + strand at 1438.503 kb on + strand at 1438.503 kb on + strand at 1438.503 kb on + strand at 1438.503 kb on + strand at 1438.504 kb on - strand at 1438.504 kb on - strand at 1438.504 kb on - strand at 1438.504 kb on - strand at 1438.504 kb on - strand at 1438.504 kb on - strand at 1438.505 kb on + strand at 1438.528 kb on - strand at 1438.538 kb on - strand at 1438.538 kb on - strand at 1438.581 kb on + strand at 1438.760 kb on + strand, within DDA3937_RS06440 at 1438.761 kb on - strand, within DDA3937_RS06440 at 1438.761 kb on - strand, within DDA3937_RS06440 at 1438.787 kb on + strand, within DDA3937_RS06440 at 1438.787 kb on + strand, within DDA3937_RS06440 at 1438.787 kb on + strand, within DDA3937_RS06440 at 1438.788 kb on - strand, within DDA3937_RS06440 at 1438.788 kb on - strand, within DDA3937_RS06440 at 1438.788 kb on - strand, within DDA3937_RS06440 at 1438.788 kb on - strand, within DDA3937_RS06440 at 1438.806 kb on - strand, within DDA3937_RS06440 at 1438.926 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.931 kb on + strand, within DDA3937_RS06440 at 1438.932 kb on - strand, within DDA3937_RS06440 at 1438.932 kb on - strand, within DDA3937_RS06440 at 1438.932 kb on - strand, within DDA3937_RS06440 at 1438.932 kb on - strand, within DDA3937_RS06440 at 1438.936 kb on + strand, within DDA3937_RS06440 at 1438.936 kb on + strand, within DDA3937_RS06440 at 1438.936 kb on + strand, within DDA3937_RS06440 at 1438.937 kb on - strand, within DDA3937_RS06440 at 1438.937 kb on - strand, within DDA3937_RS06440 at 1438.971 kb on + strand, within DDA3937_RS06440 at 1439.024 kb on + strand, within DDA3937_RS06440 at 1439.025 kb on - strand, within DDA3937_RS06440 at 1439.025 kb on - strand, within DDA3937_RS06440 at 1439.025 kb on - strand, within DDA3937_RS06440 at 1439.027 kb on + strand, within DDA3937_RS06440 at 1439.027 kb on + strand, within DDA3937_RS06440 at 1439.027 kb on + strand, within DDA3937_RS06440 at 1439.027 kb on + strand, within DDA3937_RS06440 at 1439.027 kb on + strand, within DDA3937_RS06440 at 1439.028 kb on - strand, within DDA3937_RS06440
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,435,821 + -0.6 1,435,849 - -1.4 1,435,849 - -1.5 1,435,849 - -2.3 1,435,849 - -0.9 1,435,849 - -2.6 1,435,904 + -0.8 1,435,920 - -2.7 1,435,992 + DDA3937_RS06430 0.18 -2.9 1,435,993 - DDA3937_RS06430 0.18 -0.7 1,436,047 + DDA3937_RS06430 0.25 +2.4 1,436,047 + DDA3937_RS06430 0.25 +1.5 1,436,047 + DDA3937_RS06430 0.25 +0.2 1,436,047 + DDA3937_RS06430 0.25 -2.5 1,436,048 - DDA3937_RS06430 0.25 +1.4 1,436,048 - DDA3937_RS06430 0.25 +2.3 1,436,048 - DDA3937_RS06430 0.25 +1.9 1,436,048 - DDA3937_RS06430 0.25 +1.8 1,436,048 - DDA3937_RS06430 0.25 -1.4 1,436,048 - -1.1 1,436,048 - DDA3937_RS06430 0.25 -0.6 1,436,055 + DDA3937_RS06430 0.26 -0.9 1,436,056 - DDA3937_RS06430 0.26 -1.7 1,436,065 + DDA3937_RS06430 0.27 +0.4 1,436,082 - DDA3937_RS06430 0.29 -2.1 1,436,126 + DDA3937_RS06430 0.35 -1.6 1,436,126 + DDA3937_RS06430 0.35 -4.2 1,436,126 + DDA3937_RS06430 0.35 -2.1 1,436,127 - DDA3937_RS06430 0.35 -0.9 1,436,127 - DDA3937_RS06430 0.35 -1.5 1,436,139 + DDA3937_RS06430 0.36 -0.1 1,436,156 - DDA3937_RS06430 0.39 -2.8 1,436,156 - DDA3937_RS06430 0.39 -0.5 1,436,175 + DDA3937_RS06430 0.41 -0.4 1,436,175 + DDA3937_RS06430 0.41 +0.0 1,436,176 - DDA3937_RS06430 0.41 -1.9 1,436,310 + DDA3937_RS06430 0.58 +0.9 1,436,353 + DDA3937_RS06430 0.63 -0.6 1,436,353 + DDA3937_RS06430 0.63 -1.6 1,436,439 - DDA3937_RS06430 0.74 -1.1 1,436,439 - DDA3937_RS06430 0.74 -1.0 1,436,473 + DDA3937_RS06430 0.79 -1.7 1,436,522 + DDA3937_RS06430 0.85 -0.1 1,436,523 - DDA3937_RS06430 0.85 +0.0 1,436,523 - DDA3937_RS06430 0.85 -1.8 1,436,580 + +0.5 1,436,581 - -2.7 1,436,581 - +3.7 1,436,615 - -1.6 1,436,615 - -1.4 1,436,641 + -0.6 1,436,642 - +0.6 1,436,642 - -0.9 1,437,211 - DDA3937_RS06435 0.36 +0.8 1,437,405 - DDA3937_RS06435 0.51 -1.4 1,438,117 - -2.6 1,438,117 - -1.0 1,438,117 - +3.1 1,438,229 - -0.6 1,438,255 - +1.2 1,438,257 + +3.1 1,438,295 - -0.9 1,438,295 - +1.7 1,438,336 - +2.0 1,438,362 - -1.4 1,438,362 - -0.8 1,438,404 - +1.0 1,438,413 + +0.2 1,438,414 - +1.7 1,438,414 - -1.9 1,438,436 - +0.2 1,438,472 + +1.9 1,438,472 + +1.7 1,438,473 - +0.8 1,438,473 - +3.5 1,438,483 + +1.7 1,438,483 + +2.2 1,438,483 + +2.3 1,438,483 + +2.3 1,438,483 + +2.1 1,438,483 + +1.8 1,438,484 - +4.3 1,438,484 - +3.7 1,438,484 - +3.1 1,438,486 + +0.8 1,438,487 - +3.1 1,438,503 + +2.5 1,438,503 + +1.3 1,438,503 + +2.6 1,438,503 + +2.5 1,438,503 + +2.1 1,438,503 + +1.3 1,438,504 - +3.0 1,438,504 - +1.6 1,438,504 - +6.0 1,438,504 - +3.9 1,438,504 - +3.2 1,438,504 - +3.8 1,438,505 + +2.7 1,438,528 - +2.0 1,438,538 - +2.0 1,438,538 - +2.6 1,438,581 + +2.5 1,438,760 + DDA3937_RS06440 0.21 +1.3 1,438,761 - DDA3937_RS06440 0.21 +0.3 1,438,761 - DDA3937_RS06440 0.21 -0.6 1,438,787 + DDA3937_RS06440 0.27 +0.2 1,438,787 + DDA3937_RS06440 0.27 +0.8 1,438,787 + DDA3937_RS06440 0.27 +0.9 1,438,788 - DDA3937_RS06440 0.28 -0.9 1,438,788 - DDA3937_RS06440 0.28 +1.7 1,438,788 - DDA3937_RS06440 0.28 +0.9 1,438,788 - DDA3937_RS06440 0.28 -0.6 1,438,806 - DDA3937_RS06440 0.32 +1.9 1,438,926 + DDA3937_RS06440 0.63 +1.4 1,438,931 + DDA3937_RS06440 0.64 -0.4 1,438,931 + DDA3937_RS06440 0.64 +0.5 1,438,931 + DDA3937_RS06440 0.64 -1.8 1,438,931 + DDA3937_RS06440 0.64 -2.1 1,438,931 + DDA3937_RS06440 0.64 -1.0 1,438,931 + DDA3937_RS06440 0.64 -0.1 1,438,931 + DDA3937_RS06440 0.64 -1.2 1,438,931 + DDA3937_RS06440 0.64 +0.5 1,438,931 + DDA3937_RS06440 0.64 +0.7 1,438,931 + DDA3937_RS06440 0.64 +0.6 1,438,931 + DDA3937_RS06440 0.64 -0.3 1,438,931 + -0.1 1,438,931 + DDA3937_RS06440 0.64 -0.1 1,438,931 + DDA3937_RS06440 0.64 +0.0 1,438,931 + DDA3937_RS06440 0.64 -0.9 1,438,931 + DDA3937_RS06440 0.64 -1.1 1,438,932 - DDA3937_RS06440 0.65 +0.6 1,438,932 - DDA3937_RS06440 0.65 +0.6 1,438,932 - DDA3937_RS06440 0.65 +0.9 1,438,932 - DDA3937_RS06440 0.65 +0.6 1,438,936 + DDA3937_RS06440 0.66 -0.8 1,438,936 + DDA3937_RS06440 0.66 +0.0 1,438,936 + DDA3937_RS06440 0.66 -0.5 1,438,937 - DDA3937_RS06440 0.66 +1.7 1,438,937 - DDA3937_RS06440 0.66 +1.1 1,438,971 + DDA3937_RS06440 0.75 +1.1 1,439,024 + DDA3937_RS06440 0.88 -0.0 1,439,025 - DDA3937_RS06440 0.88 -0.3 1,439,025 - DDA3937_RS06440 0.88 +0.6 1,439,025 - DDA3937_RS06440 0.88 +1.3 1,439,027 + DDA3937_RS06440 0.89 +0.7 1,439,027 + DDA3937_RS06440 0.89 +0.6 1,439,027 + DDA3937_RS06440 0.89 -0.2 1,439,027 + DDA3937_RS06440 0.89 +1.1 1,439,027 + DDA3937_RS06440 0.89 +0.0 1,439,028 - DDA3937_RS06440 0.89 +0.3
Or see this region's nucleotide sequence