Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06355

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,418,257	+		DDA3937_RS06345	0.81	-0.5
1,418,258	-		DDA3937_RS06345	0.82	-0.2
1,418,258	-		DDA3937_RS06345	0.82	-0.4
1,418,326	+				-1.3
1,418,326	+				+1.2
1,418,326	+				+0.1
1,418,326	+				+1.2
1,418,376	+				-2.1
1,418,376	+				+2.1
1,418,420	-				+1.5
1,418,424	+				-2.2
1,418,458	+				-2.8
1,418,459	-				-1.0
1,418,512	+				-0.5
1,418,512	+				+0.3
1,418,513	-				-3.2
1,418,541	-				+1.2
1,418,591	+				+0.7
1,418,592	-				+0.7
1,418,592	-				-2.5
1,418,599	-				-1.1
1,418,600	+				-2.2
1,418,601	-				-3.6
1,418,601	-				-2.6
1,418,601	-				+0.7
1,418,619	-				-1.5
1,418,619	-				-1.5
1,418,634	+				-1.8
1,418,635	-				-1.7
1,418,682	+				+0.6
1,418,682	+				-0.8
1,418,682	+				-1.7
1,418,683	-				-1.1
1,418,877	+		DDA3937_RS06350	0.43	+0.3
1,418,917	+		DDA3937_RS06350	0.50	+1.6
1,418,918	-		DDA3937_RS06350	0.51	-0.6
1,418,918	-		DDA3937_RS06350	0.51	-0.7
1,418,995	-		DDA3937_RS06350	0.65	-1.7
1,419,014	+		DDA3937_RS06350	0.69	+1.7
1,419,014	+		DDA3937_RS06350	0.69	-2.2
1,419,014	+				-0.5
1,419,014	+		DDA3937_RS06350	0.69	-1.8
1,419,015	-		DDA3937_RS06350	0.69	-0.6
1,419,015	-		DDA3937_RS06350	0.69	-0.5
1,419,120	+		DDA3937_RS06350	0.88	-0.5
1,419,120	+		DDA3937_RS06350	0.88	-1.3
1,419,121	-		DDA3937_RS06350	0.88	-3.8
1,419,121	-				-0.8
1,419,121	-				-0.5
1,419,180	+				-2.3
1,419,180	+				-1.5
1,419,180	+				-1.5
1,419,180	+				-0.3
1,419,180	+				-2.4
1,419,180	+				-1.1
1,419,214	-				-2.0
1,419,237	+				-2.6
1,419,238	-				-1.3
1,419,238	-				-0.2
1,419,254	+				-3.0
1,419,255	-				+0.8
1,419,255	-				-1.2
1,419,283	+				-2.1
1,419,286	+				-1.6
1,419,286	+				-3.1
1,419,286	+				-1.1
1,419,286	+				-2.7
1,419,286	+				-1.5
1,419,286	+				-1.7
1,419,286	+				-1.3
1,419,286	+				+0.5
1,419,286	+				-2.0
1,419,286	+				+0.2
1,419,287	-				-3.2
1,419,287	-				-0.8
1,419,287	-				-4.0
1,419,287	-				-0.5
1,419,287	-				-1.4
1,419,287	-				-0.7
1,419,287	-				-1.4
1,419,287	-				-0.4
1,419,287	-				-0.7
1,419,287	-				-1.1
1,419,287	-				-2.9
1,419,387	+		DDA3937_RS06355	0.11	-1.1
1,419,451	+		DDA3937_RS06355	0.15	-1.5
1,419,451	+		DDA3937_RS06355	0.15	-1.7
1,419,452	-		DDA3937_RS06355	0.15	+1.4
1,419,493	-		DDA3937_RS06355	0.17	-1.8
1,419,598	-		DDA3937_RS06355	0.24	-1.1
1,419,636	+		DDA3937_RS06355	0.26	-3.4
1,419,676	+		DDA3937_RS06355	0.28	-1.6
1,419,739	-		DDA3937_RS06355	0.32	-1.8
1,419,838	+		DDA3937_RS06355	0.38	-3.6
1,419,838	+		DDA3937_RS06355	0.38	-1.5
1,419,839	-		DDA3937_RS06355	0.38	-2.3
1,419,839	-		DDA3937_RS06355	0.38	-2.0
1,419,935	-		DDA3937_RS06355	0.44	-0.3
1,419,965	+		DDA3937_RS06355	0.46	-1.5
1,419,966	-				-0.1
1,419,966	-		DDA3937_RS06355	0.46	-0.3
1,419,966	-		DDA3937_RS06355	0.46	-1.8
1,420,126	+		DDA3937_RS06355	0.56	-2.2
1,420,177	+		DDA3937_RS06355	0.59	-1.4
1,420,177	+		DDA3937_RS06355	0.59	-2.5
1,420,178	-		DDA3937_RS06355	0.59	-2.3
1,420,198	+		DDA3937_RS06355	0.60	-0.5
1,420,198	+		DDA3937_RS06355	0.60	+1.3
1,420,198	+		DDA3937_RS06355	0.60	-1.3
1,420,198	+		DDA3937_RS06355	0.60	-2.7
1,420,198	+		DDA3937_RS06355	0.60	-2.0
1,420,280	+		DDA3937_RS06355	0.65	-3.0
1,420,280	+		DDA3937_RS06355	0.65	-0.8
1,420,443	+		DDA3937_RS06355	0.75	-1.7
1,420,443	+		DDA3937_RS06355	0.75	-2.2
1,420,443	+		DDA3937_RS06355	0.75	-0.8
1,420,444	-		DDA3937_RS06355	0.75	+0.6
1,420,444	-		DDA3937_RS06355	0.75	-0.9
1,420,504	+		DDA3937_RS06355	0.79	-0.8
1,420,504	+		DDA3937_RS06355	0.79	-2.0
1,420,504	+		DDA3937_RS06355	0.79	-2.8
1,420,505	-		DDA3937_RS06355	0.79	-0.5
1,420,505	-		DDA3937_RS06355	0.79	-2.5
1,420,505	-		DDA3937_RS06355	0.79	-1.1
1,420,505	-		DDA3937_RS06355	0.79	-2.1
1,420,505	-		DDA3937_RS06355	0.79	-2.3
1,420,505	-		DDA3937_RS06355	0.79	-3.0
1,420,505	-				-1.1
1,420,505	-		DDA3937_RS06355	0.79	-2.1
1,420,540	+		DDA3937_RS06355	0.81	-1.7
1,420,540	+		DDA3937_RS06355	0.81	-2.5
1,420,540	+		DDA3937_RS06355	0.81	-1.3
1,420,541	-		DDA3937_RS06355	0.81	-2.7
1,420,541	-		DDA3937_RS06355	0.81	-0.5
1,420,750	+				-2.8
1,420,750	+				-2.6
1,420,750	+				-2.6
1,420,750	+				-0.1
1,420,750	+				-2.8
1,420,751	-				-2.0
1,420,751	-				-1.1
1,420,751	-				-2.4
1,420,760	-				-1.5
1,420,850	-				-3.4
1,420,885	-				-1.8
1,420,888	+				-3.0
1,420,888	+				+1.9
1,420,888	+				+1.0
1,420,888	+				-1.8
1,420,888	+				-2.6
1,420,889	-				-0.8
1,420,889	-				-0.8
1,421,038	+		DDA3937_RS06360	0.27	-0.4
1,421,038	+		DDA3937_RS06360	0.27	+0.5
1,421,039	-		DDA3937_RS06360	0.27	-0.5
1,421,095	-		DDA3937_RS06360	0.40	+0.0
1,421,257	+		DDA3937_RS06360	0.78	+0.5
1,421,331	+				-1.9
1,421,332	-				+0.5
1,421,332	-				+0.4
1,421,336	+				-1.1
1,421,345	-				-2.6
1,421,384	+				-1.7
1,421,424	-				-3.3
1,421,443	+				+1.1
1,421,443	+				-2.0
1,421,444	-				+1.7
1,421,444	-				-1.8
1,421,444	-				-2.1
1,421,444	-				-2.7
1,421,529	+		DDA3937_RS06365	0.14	-0.5
1,421,529	+		DDA3937_RS06365	0.14	-2.5
1,421,529	+		DDA3937_RS06365	0.14	-1.5
1,421,529	+		DDA3937_RS06365	0.14	+1.7
1,421,529	+		DDA3937_RS06365	0.14	-2.1
1,421,530	-		DDA3937_RS06365	0.14	-0.5
1,421,530	-		DDA3937_RS06365	0.14	-1.4
1,421,530	-		DDA3937_RS06365	0.14	-1.1
1,421,530	-		DDA3937_RS06365	0.14	-1.1
1,421,530	-		DDA3937_RS06365	0.14	-0.9
1,421,530	-		DDA3937_RS06365	0.14	-0.8
1,421,533	+		DDA3937_RS06365	0.14	-2.6
1,421,541	+		DDA3937_RS06365	0.15	-1.3
1,421,541	+		DDA3937_RS06365	0.15	-1.2
1,421,541	+		DDA3937_RS06365	0.15	-0.3
1,421,542	-		DDA3937_RS06365	0.16	-1.5
1,421,542	-		DDA3937_RS06365	0.16	-1.8
1,421,725	+		DDA3937_RS06365	0.42	-1.1
1,421,726	-		DDA3937_RS06365	0.42	+1.3
1,421,821	-		DDA3937_RS06365	0.56	-3.2
1,421,821	-		DDA3937_RS06365	0.56	-4.0
1,421,821	-		DDA3937_RS06365	0.56	-0.3
1,421,821	-		DDA3937_RS06365	0.56	+2.3
1,421,821	-		DDA3937_RS06365	0.56	-1.3