Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06300

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,405,778	+		DDA3937_RS06295	0.65	-1.7
1,405,778	+		DDA3937_RS06295	0.65	-0.5
1,405,779	-		DDA3937_RS06295	0.65	-1.8
1,405,779	-		DDA3937_RS06295	0.65	-1.3
1,405,781	+		DDA3937_RS06295	0.66	-0.1
1,405,782	-		DDA3937_RS06295	0.66	-1.1
1,405,782	-		DDA3937_RS06295	0.66	+1.2
1,405,782	-		DDA3937_RS06295	0.66	+1.4
1,405,814	+		DDA3937_RS06295	0.68	-0.1
1,405,815	-		DDA3937_RS06295	0.68	-1.5
1,405,815	-		DDA3937_RS06295	0.68	-0.4
1,405,883	+		DDA3937_RS06295	0.72	-1.1
1,405,883	+		DDA3937_RS06295	0.72	-1.1
1,405,883	+		DDA3937_RS06295	0.72	-0.9
1,405,883	+		DDA3937_RS06295	0.72	-0.5
1,405,884	-		DDA3937_RS06295	0.72	-0.6
1,405,884	-		DDA3937_RS06295	0.72	-3.8
1,405,884	-		DDA3937_RS06295	0.72	-2.4
1,405,912	-		DDA3937_RS06295	0.73	+0.2
1,405,913	+				+0.5
1,405,914	-		DDA3937_RS06295	0.74	-1.7
1,405,914	-		DDA3937_RS06295	0.74	+0.1
1,405,914	-		DDA3937_RS06295	0.74	-0.1
1,405,952	+		DDA3937_RS06295	0.76	-0.7
1,406,118	+		DDA3937_RS06295	0.86	-0.5
1,406,119	-		DDA3937_RS06295	0.86	+1.5
1,406,164	-		DDA3937_RS06295	0.89	-1.3
1,406,164	-		DDA3937_RS06295	0.89	-1.1
1,406,164	-		DDA3937_RS06295	0.89	-0.5
1,406,345	-				-2.3
1,406,353	+				-0.1
1,406,353	+				-1.1
1,406,353	+				-0.1
1,406,353	+				-2.8
1,406,353	+				-1.8
1,406,353	+				-0.4
1,406,354	-				-2.1
1,406,354	-				-1.5
1,406,354	-				+0.6
1,406,354	-				-1.5
1,406,404	-				+3.2
1,406,411	+				+0.7
1,406,434	-				+0.6
1,406,618	+				+0.9
1,406,629	+				+1.2
1,406,629	+				-2.8
1,406,630	-				+0.5
1,406,631	+				-1.3
1,406,632	-				-2.9
1,406,632	-				-2.5
1,406,642	+				-1.1
1,406,648	+				-0.7
1,406,675	-				-0.5
1,406,677	+				+0.0
1,406,678	-				-0.1
1,406,678	-				+2.3
1,406,678	-				-2.7
1,406,678	-				-2.8
1,406,752	+				-1.1
1,406,968	-		DDA3937_RS06300	0.26	+1.3
1,406,973	+		DDA3937_RS06300	0.27	+3.4
1,406,991	+		DDA3937_RS06300	0.28	-1.2
1,407,028	+		DDA3937_RS06300	0.31	+2.7
1,407,028	+		DDA3937_RS06300	0.31	+1.8
1,407,028	+		DDA3937_RS06300	0.31	+2.1
1,407,150	+		DDA3937_RS06300	0.41	+1.6
1,407,151	-		DDA3937_RS06300	0.41	-2.9
1,407,175	-		DDA3937_RS06300	0.43	-1.1
1,407,257	+		DDA3937_RS06300	0.50	+3.2
1,407,257	+		DDA3937_RS06300	0.50	-1.3
1,407,258	-				+0.5
1,407,258	-		DDA3937_RS06300	0.50	-1.7
1,407,258	-		DDA3937_RS06300	0.50	+0.5
1,407,286	-		DDA3937_RS06300	0.52	+1.4
1,407,330	+		DDA3937_RS06300	0.56	-0.1
1,407,369	+		DDA3937_RS06300	0.59	-1.7
1,407,369	+		DDA3937_RS06300	0.59	+1.4
1,407,369	+		DDA3937_RS06300	0.59	+6.0
1,407,369	+		DDA3937_RS06300	0.59	-1.7
1,407,369	+		DDA3937_RS06300	0.59	+1.5
1,407,370	-		DDA3937_RS06300	0.59	-1.8
1,407,370	-				-0.5
1,407,370	-		DDA3937_RS06300	0.59	-3.4
1,407,371	+		DDA3937_RS06300	0.59	-1.8
1,407,371	+				-0.8
1,407,371	+		DDA3937_RS06300	0.59	-2.0
1,407,371	+		DDA3937_RS06300	0.59	+1.3
1,407,371	+		DDA3937_RS06300	0.59	+0.7
1,407,371	+		DDA3937_RS06300	0.59	+1.7
1,407,371	+		DDA3937_RS06300	0.59	+0.2
1,407,371	+		DDA3937_RS06300	0.59	-3.2
1,407,372	-		DDA3937_RS06300	0.59	-0.5
1,407,372	-		DDA3937_RS06300	0.59	-2.8
1,407,372	-		DDA3937_RS06300	0.59	-1.8
1,407,556	+		DDA3937_RS06300	0.74	-2.3
1,407,556	+		DDA3937_RS06300	0.74	+2.3
1,407,557	-		DDA3937_RS06300	0.74	-0.8
1,407,563	+		DDA3937_RS06300	0.75	+0.6
1,407,564	-		DDA3937_RS06300	0.75	-1.3
1,407,564	-		DDA3937_RS06300	0.75	-2.0
1,407,565	+		DDA3937_RS06300	0.75	+0.3
1,407,566	-		DDA3937_RS06300	0.75	-1.5
1,407,774	+				+0.3
1,407,800	+				-0.8
1,407,896	+				-2.1
1,407,896	+				-1.8
1,407,896	+				+0.2
1,407,896	+				-3.3
1,407,897	-				-0.4
1,407,897	-				+2.6
1,407,897	-				+1.7
1,407,897	-				-0.8
1,407,897	-				+1.6
1,407,897	-				-1.8
1,407,902	+				-1.8
1,407,939	+				+1.5
1,407,939	+				-1.7
1,407,940	-				+2.5
1,408,090	+		DDA3937_RS06305	0.16	+2.8
1,408,173	-		DDA3937_RS06305	0.24	-1.7
1,408,173	-		DDA3937_RS06305	0.24	-0.1
1,408,173	-		DDA3937_RS06305	0.24	-1.2
1,408,175	+		DDA3937_RS06305	0.24	-1.3
1,408,175	+		DDA3937_RS06305	0.24	-0.5
1,408,175	+		DDA3937_RS06305	0.24	+1.1
1,408,175	+		DDA3937_RS06305	0.24	+3.5
1,408,175	+		DDA3937_RS06305	0.24	-1.1
1,408,175	+		DDA3937_RS06305	0.24	-1.1
1,408,175	+		DDA3937_RS06305	0.24	-1.3
1,408,175	+		DDA3937_RS06305	0.24	-1.3
1,408,175	+		DDA3937_RS06305	0.24	-0.1
1,408,176	-		DDA3937_RS06305	0.24	-2.9
1,408,176	-		DDA3937_RS06305	0.24	+2.1
1,408,176	-		DDA3937_RS06305	0.24	+4.6
1,408,176	-		DDA3937_RS06305	0.24	+0.5
1,408,176	-		DDA3937_RS06305	0.24	+0.9
1,408,176	-		DDA3937_RS06305	0.24	-0.8
1,408,176	-				+1.5
1,408,176	-		DDA3937_RS06305	0.24	-1.9
1,408,177	+		DDA3937_RS06305	0.24	+1.2
1,408,178	-		DDA3937_RS06305	0.24	+1.9
1,408,178	-		DDA3937_RS06305	0.24	+1.3
1,408,329	-		DDA3937_RS06305	0.37	-2.2
1,408,580	+		DDA3937_RS06305	0.59	-1.7
1,408,580	+		DDA3937_RS06305	0.59	-2.9
1,408,581	-		DDA3937_RS06305	0.59	-0.5
1,408,581	-		DDA3937_RS06305	0.59	-1.7
1,408,757	-		DDA3937_RS06305	0.74	-0.8