Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06050

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06040 and DDA3937_RS06045 are separated by 9 nucleotidesDDA3937_RS06045 and DDA3937_RS06050 are separated by 14 nucleotidesDDA3937_RS06050 and DDA3937_RS06055 are separated by 175 nucleotidesDDA3937_RS06055 and DDA3937_RS06060 are separated by 2 nucleotides DDA3937_RS06040: DDA3937_RS06040 - DnaA inactivator Hda, at 1,361,107 to 1,361,814 _RS06040 DDA3937_RS06045: DDA3937_RS06045 - arsenate reductase (glutaredoxin), at 1,361,824 to 1,362,180 _RS06045 DDA3937_RS06050: DDA3937_RS06050 - M48 family metallopeptidase, at 1,362,195 to 1,363,658 _RS06050 DDA3937_RS06055: DDA3937_RS06055 - thioredoxin-dependent thiol peroxidase, at 1,363,834 to 1,364,301 _RS06055 DDA3937_RS06060: DDA3937_RS06060 - glycine cleavage system transcriptional repressor, at 1,364,304 to 1,364,918 _RS06060 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1361.245 kb on + strand, within DDA3937_RS06040at 1361.245 kb on + strand, within DDA3937_RS06040at 1361.245 kb on + strand, within DDA3937_RS06040at 1361.245 kb on + strand, within DDA3937_RS06040at 1361.246 kb on - strand, within DDA3937_RS06040at 1361.246 kb on - strand, within DDA3937_RS06040at 1361.362 kb on + strandat 1361.695 kb on - strand, within DDA3937_RS06040at 1361.719 kb on - strandat 1361.773 kb on - strandat 1361.773 kb on - strandat 1361.832 kb on + strandat 1361.865 kb on + strand, within DDA3937_RS06045at 1361.917 kb on + strand, within DDA3937_RS06045at 1362.077 kb on + strand, within DDA3937_RS06045at 1362.153 kb on + strandat 1362.158 kb on + strandat 1362.159 kb on - strandat 1362.159 kb on - strandat 1362.159 kb on - strandat 1362.174 kb on + strandat 1362.175 kb on - strandat 1362.182 kb on + strandat 1362.182 kb on + strandat 1362.182 kb on + strandat 1362.182 kb on + strandat 1362.182 kb on + strandat 1362.183 kb on - strandat 1362.183 kb on - strandat 1362.415 kb on - strand, within DDA3937_RS06050at 1362.415 kb on - strand, within DDA3937_RS06050at 1362.448 kb on + strand, within DDA3937_RS06050at 1362.449 kb on - strand, within DDA3937_RS06050at 1362.449 kb on - strand, within DDA3937_RS06050at 1362.454 kb on + strand, within DDA3937_RS06050at 1362.454 kb on + strand, within DDA3937_RS06050at 1362.454 kb on + strand, within DDA3937_RS06050at 1362.455 kb on - strand, within DDA3937_RS06050at 1362.606 kb on - strand, within DDA3937_RS06050at 1362.685 kb on + strand, within DDA3937_RS06050at 1362.686 kb on - strand, within DDA3937_RS06050at 1362.805 kb on + strand, within DDA3937_RS06050at 1362.805 kb on + strand, within DDA3937_RS06050at 1362.805 kb on + strand, within DDA3937_RS06050at 1362.805 kb on + strandat 1362.805 kb on + strand, within DDA3937_RS06050at 1362.805 kb on + strand, within DDA3937_RS06050at 1362.805 kb on + strand, within DDA3937_RS06050at 1362.806 kb on - strand, within DDA3937_RS06050at 1362.806 kb on - strand, within DDA3937_RS06050at 1362.806 kb on - strand, within DDA3937_RS06050at 1363.287 kb on + strand, within DDA3937_RS06050at 1363.435 kb on + strand, within DDA3937_RS06050at 1363.435 kb on + strand, within DDA3937_RS06050at 1363.436 kb on - strand, within DDA3937_RS06050at 1363.436 kb on - strand, within DDA3937_RS06050at 1363.447 kb on - strand, within DDA3937_RS06050at 1363.492 kb on + strand, within DDA3937_RS06050at 1363.492 kb on + strand, within DDA3937_RS06050at 1363.658 kb on + strandat 1363.658 kb on + strandat 1363.699 kb on + strandat 1363.705 kb on - strandat 1363.755 kb on - strandat 1363.755 kb on - strandat 1363.897 kb on + strand, within DDA3937_RS06055at 1363.955 kb on + strand, within DDA3937_RS06055at 1363.955 kb on + strand, within DDA3937_RS06055at 1363.955 kb on + strand, within DDA3937_RS06055at 1363.956 kb on - strand, within DDA3937_RS06055at 1363.956 kb on - strand, within DDA3937_RS06055at 1364.058 kb on + strand, within DDA3937_RS06055at 1364.189 kb on + strand, within DDA3937_RS06055at 1364.195 kb on + strand, within DDA3937_RS06055at 1364.195 kb on + strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.232 kb on + strand, within DDA3937_RS06055at 1364.233 kb on - strand, within DDA3937_RS06055at 1364.305 kb on + strandat 1364.306 kb on - strandat 1364.306 kb on - strandat 1364.336 kb on - strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.351 kb on + strandat 1364.351 kb on + strandat 1364.352 kb on - strandat 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.402 kb on + strandat 1364.402 kb on + strand, within DDA3937_RS06060at 1364.402 kb on + strand, within DDA3937_RS06060at 1364.439 kb on - strand, within DDA3937_RS06060at 1364.449 kb on + strand, within DDA3937_RS06060at 1364.449 kb on + strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.639 kb on + strand, within DDA3937_RS06060at 1364.640 kb on - strand, within DDA3937_RS06060

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,361,245 + DDA3937_RS06040 0.19 +0.5
1,361,245 + DDA3937_RS06040 0.19 +2.1
1,361,245 + DDA3937_RS06040 0.19 -0.8
1,361,245 + DDA3937_RS06040 0.19 -1.1
1,361,246 - DDA3937_RS06040 0.20 +3.7
1,361,246 - DDA3937_RS06040 0.20 +0.5
1,361,362 + +1.5
1,361,695 - DDA3937_RS06040 0.83 -0.1
1,361,719 - -0.5
1,361,773 - -0.8
1,361,773 - -0.1
1,361,832 + +2.1
1,361,865 + DDA3937_RS06045 0.11 -1.3
1,361,917 + DDA3937_RS06045 0.26 -2.0
1,362,077 + DDA3937_RS06045 0.71 -0.1
1,362,153 + -1.3
1,362,158 + -2.7
1,362,159 - -2.3
1,362,159 - +0.5
1,362,159 - -3.1
1,362,174 + -0.2
1,362,175 - -2.5
1,362,182 + +0.8
1,362,182 + -0.2
1,362,182 + -1.1
1,362,182 + -1.1
1,362,182 + -1.8
1,362,183 - +1.6
1,362,183 - +0.7
1,362,415 - DDA3937_RS06050 0.15 -1.3
1,362,415 - DDA3937_RS06050 0.15 -2.3
1,362,448 + DDA3937_RS06050 0.17 -1.4
1,362,449 - DDA3937_RS06050 0.17 -1.5
1,362,449 - DDA3937_RS06050 0.17 -3.3
1,362,454 + DDA3937_RS06050 0.18 -0.1
1,362,454 + DDA3937_RS06050 0.18 -0.1
1,362,454 + DDA3937_RS06050 0.18 -1.1
1,362,455 - DDA3937_RS06050 0.18 -1.7
1,362,606 - DDA3937_RS06050 0.28 -2.2
1,362,685 + DDA3937_RS06050 0.33 -3.3
1,362,686 - DDA3937_RS06050 0.34 -0.9
1,362,805 + DDA3937_RS06050 0.42 -3.1
1,362,805 + DDA3937_RS06050 0.42 -2.4
1,362,805 + DDA3937_RS06050 0.42 -2.0
1,362,805 + -0.5
1,362,805 + DDA3937_RS06050 0.42 -2.1
1,362,805 + DDA3937_RS06050 0.42 -1.5
1,362,805 + DDA3937_RS06050 0.42 -1.3
1,362,806 - DDA3937_RS06050 0.42 -2.6
1,362,806 - DDA3937_RS06050 0.42 -0.5
1,362,806 - DDA3937_RS06050 0.42 -0.8
1,363,287 + DDA3937_RS06050 0.75 -1.0
1,363,435 + DDA3937_RS06050 0.85 -2.5
1,363,435 + DDA3937_RS06050 0.85 -0.3
1,363,436 - DDA3937_RS06050 0.85 -1.8
1,363,436 - DDA3937_RS06050 0.85 -2.8
1,363,447 - DDA3937_RS06050 0.86 -1.8
1,363,492 + DDA3937_RS06050 0.89 +0.3
1,363,492 + DDA3937_RS06050 0.89 -2.2
1,363,658 + -2.3
1,363,658 + -0.3
1,363,699 + -0.5
1,363,705 - -0.3
1,363,755 - -0.6
1,363,755 - +0.7
1,363,897 + DDA3937_RS06055 0.13 +0.4
1,363,955 + DDA3937_RS06055 0.26 -0.8
1,363,955 + DDA3937_RS06055 0.26 -0.1
1,363,955 + DDA3937_RS06055 0.26 +0.4
1,363,956 - DDA3937_RS06055 0.26 -2.6
1,363,956 - DDA3937_RS06055 0.26 +1.9
1,364,058 + DDA3937_RS06055 0.48 -1.8
1,364,189 + DDA3937_RS06055 0.76 -0.8
1,364,195 + DDA3937_RS06055 0.77 +2.6
1,364,195 + DDA3937_RS06055 0.77 +1.5
1,364,196 - DDA3937_RS06055 0.77 +1.5
1,364,196 - DDA3937_RS06055 0.77 +1.2
1,364,196 - DDA3937_RS06055 0.77 +3.3
1,364,232 + DDA3937_RS06055 0.85 -1.1
1,364,233 - DDA3937_RS06055 0.85 +0.5
1,364,305 + +0.6
1,364,306 - -2.3
1,364,306 - +1.6
1,364,336 - +0.8
1,364,348 + -1.5
1,364,348 + +1.7
1,364,348 + -1.3
1,364,348 + -0.5
1,364,349 - +0.8
1,364,349 - -2.4
1,364,349 - -1.3
1,364,349 - +0.8
1,364,349 - +0.9
1,364,351 + -2.6
1,364,351 + +0.4
1,364,352 - +1.2
1,364,375 + DDA3937_RS06060 0.12 +1.1
1,364,375 + DDA3937_RS06060 0.12 -2.6
1,364,375 + DDA3937_RS06060 0.12 -2.4
1,364,375 + DDA3937_RS06060 0.12 +1.2
1,364,375 + DDA3937_RS06060 0.12 +2.4
1,364,375 + DDA3937_RS06060 0.12 -2.0
1,364,375 + DDA3937_RS06060 0.12 +1.4
1,364,376 - DDA3937_RS06060 0.12 -0.4
1,364,376 - DDA3937_RS06060 0.12 -1.2
1,364,376 - DDA3937_RS06060 0.12 -2.7
1,364,376 - DDA3937_RS06060 0.12 -0.4
1,364,376 - DDA3937_RS06060 0.12 +0.7
1,364,376 - DDA3937_RS06060 0.12 -0.7
1,364,376 - DDA3937_RS06060 0.12 -1.0
1,364,376 - DDA3937_RS06060 0.12 +0.9
1,364,376 - DDA3937_RS06060 0.12 +0.3
1,364,376 - DDA3937_RS06060 0.12 -3.1
1,364,379 + DDA3937_RS06060 0.12 -1.7
1,364,379 + DDA3937_RS06060 0.12 +0.4
1,364,379 + DDA3937_RS06060 0.12 -1.3
1,364,379 + DDA3937_RS06060 0.12 +0.5
1,364,379 + DDA3937_RS06060 0.12 +0.1
1,364,379 + DDA3937_RS06060 0.12 +1.3
1,364,379 + DDA3937_RS06060 0.12 -0.5
1,364,379 + DDA3937_RS06060 0.12 +0.5
1,364,380 - DDA3937_RS06060 0.12 -0.6
1,364,380 - DDA3937_RS06060 0.12 -0.6
1,364,380 - DDA3937_RS06060 0.12 +0.1
1,364,380 - DDA3937_RS06060 0.12 +1.4
1,364,380 - DDA3937_RS06060 0.12 -2.4
1,364,380 - DDA3937_RS06060 0.12 +0.2
1,364,380 - DDA3937_RS06060 0.12 +0.0
1,364,380 - DDA3937_RS06060 0.12 -2.8
1,364,380 - DDA3937_RS06060 0.12 -2.0
1,364,380 - DDA3937_RS06060 0.12 -1.7
1,364,380 - DDA3937_RS06060 0.12 -1.3
1,364,380 - DDA3937_RS06060 0.12 -2.8
1,364,380 - DDA3937_RS06060 0.12 -0.7
1,364,380 - DDA3937_RS06060 0.12 -2.7
1,364,380 - DDA3937_RS06060 0.12 +0.1
1,364,402 + +2.3
1,364,402 + DDA3937_RS06060 0.16 -0.7
1,364,402 + DDA3937_RS06060 0.16 +1.2
1,364,439 - DDA3937_RS06060 0.22 -1.1
1,364,449 + DDA3937_RS06060 0.24 +0.9
1,364,449 + DDA3937_RS06060 0.24 -0.5
1,364,450 - DDA3937_RS06060 0.24 -1.7
1,364,450 - DDA3937_RS06060 0.24 -0.6
1,364,450 - DDA3937_RS06060 0.24 -0.5
1,364,450 - DDA3937_RS06060 0.24 -0.2
1,364,450 - DDA3937_RS06060 0.24 -1.9
1,364,450 - DDA3937_RS06060 0.24 +2.2
1,364,450 - DDA3937_RS06060 0.24 +0.9
1,364,450 - DDA3937_RS06060 0.24 -3.1
1,364,450 - DDA3937_RS06060 0.24 -3.4
1,364,450 - DDA3937_RS06060 0.24 -2.3
1,364,450 - DDA3937_RS06060 0.24 -2.4
1,364,450 - DDA3937_RS06060 0.24 -3.5
1,364,639 + DDA3937_RS06060 0.54 -1.5
1,364,640 - DDA3937_RS06060 0.55 -2.0

Or see this region's nucleotide sequence