Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05730

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,278,515	+		DDA3937_RS05725	0.31	-1.9
1,278,518	-		DDA3937_RS05725	0.32	-0.4
1,278,518	-		DDA3937_RS05725	0.32	+0.6
1,278,584	-		DDA3937_RS05725	0.50	-0.2
1,278,584	-		DDA3937_RS05725	0.50	-0.8
1,278,606	-		DDA3937_RS05725	0.56	-2.7
1,278,625	-		DDA3937_RS05725	0.61	-2.4
1,278,681	+		DDA3937_RS05725	0.76	-1.3
1,278,681	+		DDA3937_RS05725	0.76	-3.0
1,278,682	-		DDA3937_RS05725	0.77	+0.7
1,278,693	-		DDA3937_RS05725	0.80	-1.7
1,278,737	+				-4.2
1,278,738	-				-1.1
1,278,742	+				-1.3
1,278,742	+				-0.8
1,278,743	-				-1.0
1,278,743	-				+0.3
1,278,743	-				-1.7
1,278,757	+				-1.5
1,278,757	+				-0.6
1,278,757	+				-0.2
1,278,758	-				-1.5
1,278,758	-				+0.2
1,278,758	-				-2.2
1,278,758	-				-2.7
1,278,772	-				+0.5
1,278,786	+				-3.1
1,278,786	+				-0.1
1,278,787	-				-2.4
1,278,794	-				+0.5
1,278,803	+				+0.2
1,278,803	+				-3.3
1,278,803	+				-2.4
1,278,850	+				-2.0
1,278,850	+				-1.1
1,278,851	-				+0.8
1,278,865	+				+0.2
1,278,883	-				-2.0
1,278,888	+				+1.5
1,278,985	-				+1.5
1,279,007	-				-2.5
1,279,014	+				-0.2
1,279,053	+				+1.1
1,279,053	+				-1.1
1,279,055	+				-3.0
1,279,056	-				+0.0
1,279,074	+				-2.6
1,279,074	+				+0.6
1,279,074	+				+1.5
1,279,074	+				-0.1
1,279,074	+				+0.1
1,279,074	+				-1.1
1,279,075	-				+2.7
1,279,118	+				-2.1
1,279,119	-				-2.0
1,279,269	+				-1.3
1,279,270	-				+1.7
1,279,276	+				-1.3
1,279,276	+				-3.0
1,279,277	-				-0.6
1,279,329	-		DDA3937_RS21985	0.38	+0.9
1,279,329	-		DDA3937_RS21985	0.38	-1.0
1,279,329	-		DDA3937_RS21985	0.38	-1.3
1,279,339	+		DDA3937_RS21985	0.44	-1.4
1,279,339	+		DDA3937_RS21985	0.44	-1.3
1,279,339	+		DDA3937_RS21985	0.44	-0.3
1,279,339	+		DDA3937_RS21985	0.44	+1.0
1,279,339	+		DDA3937_RS21985	0.44	-2.2
1,279,340	-		DDA3937_RS21985	0.45	-2.3
1,279,340	-		DDA3937_RS21985	0.45	+1.5
1,279,340	-		DDA3937_RS21985	0.45	-3.0
1,279,340	-		DDA3937_RS21985	0.45	+1.1
1,279,340	-		DDA3937_RS21985	0.45	-0.5
1,279,340	-		DDA3937_RS21985	0.45	+1.6
1,279,368	-		DDA3937_RS21985	0.65	-2.3
1,279,368	-		DDA3937_RS21985	0.65	+1.0
1,279,368	-		DDA3937_RS21985	0.65	+1.3
1,279,368	-		DDA3937_RS21985	0.65	-0.2
1,279,407	+				-1.3
1,279,407	+				-2.6
1,279,407	+				-2.6
1,279,407	+				-2.5
1,279,408	-				-2.6
1,279,408	-				-0.9
1,279,408	-				+0.9
1,279,410	+				+0.0
1,279,410	+				+0.9
1,279,423	-				-1.0
1,279,423	-				+0.6
1,279,436	-				-1.1
1,279,517	-		DDA3937_RS05730	0.33	-2.5
1,279,517	-		DDA3937_RS05730	0.33	-0.1
1,279,519	+		DDA3937_RS05730	0.34	-1.1
1,279,519	+		DDA3937_RS05730	0.34	-1.4
1,279,520	-		DDA3937_RS05730	0.34	-3.8
1,279,520	-		DDA3937_RS05730	0.34	+0.9
1,279,520	-		DDA3937_RS05730	0.34	+1.2
1,279,520	-		DDA3937_RS05730	0.34	-0.3
1,279,555	+		DDA3937_RS05730	0.48	+1.0
1,279,555	+		DDA3937_RS05730	0.48	-2.6
1,279,555	+		DDA3937_RS05730	0.48	-3.2
1,279,555	+		DDA3937_RS05730	0.48	+0.5
1,279,555	+		DDA3937_RS05730	0.48	-0.7
1,279,555	+		DDA3937_RS05730	0.48	-1.3
1,279,555	+		DDA3937_RS05730	0.48	+2.7
1,279,556	-		DDA3937_RS05730	0.48	-2.5
1,279,556	-		DDA3937_RS05730	0.48	-2.8
1,279,556	-		DDA3937_RS05730	0.48	+1.0
1,279,556	-		DDA3937_RS05730	0.48	-2.7
1,279,561	+		DDA3937_RS05730	0.50	-1.0
1,279,562	-		DDA3937_RS05730	0.51	-2.4
1,279,582	+		DDA3937_RS05730	0.59	-1.7
1,279,582	+		DDA3937_RS05730	0.59	+0.9
1,279,582	+		DDA3937_RS05730	0.59	-1.2
1,279,582	+		DDA3937_RS05730	0.59	-1.1
1,279,583	-		DDA3937_RS05730	0.59	-2.6
1,279,583	-		DDA3937_RS05730	0.59	+0.5
1,279,583	-		DDA3937_RS05730	0.59	+1.1
1,279,583	-		DDA3937_RS05730	0.59	-2.3
1,279,617	-		DDA3937_RS05730	0.73	+0.1
1,279,618	+		DDA3937_RS05730	0.73	-0.2
1,279,623	+		DDA3937_RS05730	0.75	-1.0
1,279,624	-		DDA3937_RS05730	0.75	-1.4
1,279,624	-		DDA3937_RS05730	0.75	-2.3
1,279,661	-				-0.9
1,279,661	-				-2.7
1,279,713	-				-0.3
1,279,752	-				-0.2
1,279,759	-				+1.1
1,279,803	+				+0.6
1,279,847	+				+1.1
1,279,856	+				-0.1
1,279,857	-				-1.2
1,279,857	-				+1.7
1,279,858	+				-2.5
1,279,858	+				-0.7
1,279,859	-				-3.4
1,279,859	-				-0.0
1,279,859	-				-1.1
1,279,859	-				+0.5
1,279,891	+				-0.5
1,279,892	-				-2.3
1,279,892	-				-3.5
1,279,935	-				-1.3
1,279,962	+				-2.0
1,279,967	-				-1.5
1,280,000	+				-0.1
1,280,000	+				-1.8
1,280,000	+				+0.3
1,280,001	-				-2.4
1,280,061	-				-1.3
1,280,113	+				-1.4
1,280,114	-				-3.0
1,280,239	+		DDA3937_RS05735	0.12	+1.7
1,280,245	-		DDA3937_RS05735	0.12	-2.6
1,280,245	-		DDA3937_RS05735	0.12	-3.1
1,280,245	-		DDA3937_RS05735	0.12	-2.5
1,280,245	-		DDA3937_RS05735	0.12	-0.5
1,280,245	-		DDA3937_RS05735	0.12	-1.7
1,280,294	+		DDA3937_RS05735	0.14	-2.7
1,280,294	+		DDA3937_RS05735	0.14	-1.3
1,280,317	+		DDA3937_RS05735	0.14	-1.7
1,280,318	-		DDA3937_RS05735	0.14	-0.0
1,280,318	-		DDA3937_RS05735	0.14	-2.2
1,280,318	-		DDA3937_RS05735	0.14	-1.1
1,280,346	+		DDA3937_RS05735	0.15	-0.5
1,280,346	+		DDA3937_RS05735	0.15	+0.1
1,280,346	+		DDA3937_RS05735	0.15	-2.3
1,280,347	-		DDA3937_RS05735	0.15	-0.2
1,280,347	-		DDA3937_RS05735	0.15	-1.9
1,280,347	-		DDA3937_RS05735	0.15	-3.5
1,280,386	+				-0.1
1,280,386	+		DDA3937_RS05735	0.17	+0.5
1,280,387	-		DDA3937_RS05735	0.17	-1.3
1,280,387	-		DDA3937_RS05735	0.17	+0.2
1,280,390	-		DDA3937_RS05735	0.17	-2.6
1,280,390	-		DDA3937_RS05735	0.17	-1.5
1,280,390	-		DDA3937_RS05735	0.17	-3.4
1,280,390	-		DDA3937_RS05735	0.17	-3.8
1,280,390	-		DDA3937_RS05735	0.17	-3.3
1,280,390	-		DDA3937_RS05735	0.17	+1.8
1,280,390	-		DDA3937_RS05735	0.17	-1.3
1,280,431	-		DDA3937_RS05735	0.18	-2.6
1,280,431	-		DDA3937_RS05735	0.18	-0.4
1,280,437	+		DDA3937_RS05735	0.18	+1.3
1,280,437	+		DDA3937_RS05735	0.18	+0.5
1,280,438	-		DDA3937_RS05735	0.18	-2.4
1,280,438	-		DDA3937_RS05735	0.18	-0.7
1,280,469	-		DDA3937_RS05735	0.19	-2.4
1,280,500	+		DDA3937_RS05735	0.20	-0.4
1,280,500	+		DDA3937_RS05735	0.20	-1.7
1,280,501	-		DDA3937_RS05735	0.20	-1.5
1,280,501	-		DDA3937_RS05735	0.20	-0.8
1,280,547	-		DDA3937_RS05735	0.22	+0.1
1,280,566	-		DDA3937_RS05735	0.22	-1.2
1,280,652	+		DDA3937_RS05735	0.25	-2.1
1,280,652	+		DDA3937_RS05735	0.25	-1.8
1,280,652	+		DDA3937_RS05735	0.25	-0.3
1,280,652	+		DDA3937_RS05735	0.25	-0.1
1,280,652	+		DDA3937_RS05735	0.25	-2.5
1,280,680	+		DDA3937_RS05735	0.26	-1.7
1,280,681	-		DDA3937_RS05735	0.26	-1.3
1,280,681	-		DDA3937_RS05735	0.26	+0.1
1,280,681	-		DDA3937_RS05735	0.26	-1.5
1,280,681	-		DDA3937_RS05735	0.26	-0.4