Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05650

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,260,863	+		DDA3937_RS05645	0.40	+2.4
1,260,863	+		DDA3937_RS05645	0.40	+2.2
1,260,864	-		DDA3937_RS05645	0.40	+1.6
1,260,864	-		DDA3937_RS05645	0.40	+1.7
1,260,864	-		DDA3937_RS05645	0.40	-0.5
1,260,896	+		DDA3937_RS05645	0.43	+0.5
1,260,896	+		DDA3937_RS05645	0.43	+0.5
1,260,896	+		DDA3937_RS05645	0.43	+1.2
1,260,897	-		DDA3937_RS05645	0.43	+0.3
1,260,897	-		DDA3937_RS05645	0.43	-0.3
1,260,897	-		DDA3937_RS05645	0.43	+1.2
1,260,957	+		DDA3937_RS05645	0.47	+4.0
1,260,957	+		DDA3937_RS05645	0.47	+0.1
1,260,958	-		DDA3937_RS05645	0.47	+0.3
1,261,036	+		DDA3937_RS05645	0.54	+2.3
1,261,036	+		DDA3937_RS05645	0.54	+2.0
1,261,037	-				+3.3
1,261,037	-		DDA3937_RS05645	0.54	-0.6
1,261,037	-		DDA3937_RS05645	0.54	+1.7
1,261,065	+		DDA3937_RS05645	0.56	-0.8
1,261,065	+		DDA3937_RS05645	0.56	+1.3
1,261,065	+		DDA3937_RS05645	0.56	+0.2
1,261,065	+		DDA3937_RS05645	0.56	+1.4
1,261,065	+		DDA3937_RS05645	0.56	+1.5
1,261,065	+		DDA3937_RS05645	0.56	+1.6
1,261,065	+		DDA3937_RS05645	0.56	+1.1
1,261,066	-		DDA3937_RS05645	0.56	-0.5
1,261,066	-		DDA3937_RS05645	0.56	+0.8
1,261,066	-		DDA3937_RS05645	0.56	-0.8
1,261,066	-		DDA3937_RS05645	0.56	+1.5
1,261,066	-		DDA3937_RS05645	0.56	-2.2
1,261,069	+		DDA3937_RS05645	0.56	+0.5
1,261,069	+		DDA3937_RS05645	0.56	+2.1
1,261,069	+		DDA3937_RS05645	0.56	+2.8
1,261,069	+		DDA3937_RS05645	0.56	+2.3
1,261,069	+		DDA3937_RS05645	0.56	+0.3
1,261,069	+		DDA3937_RS05645	0.56	+1.8
1,261,069	+		DDA3937_RS05645	0.56	-1.1
1,261,070	-		DDA3937_RS05645	0.56	+0.7
1,261,070	-		DDA3937_RS05645	0.56	+1.8
1,261,070	-		DDA3937_RS05645	0.56	+1.2
1,261,087	+		DDA3937_RS05645	0.58	+2.6
1,261,088	-		DDA3937_RS05645	0.58	+0.7
1,261,088	-		DDA3937_RS05645	0.58	+1.0
1,261,124	-		DDA3937_RS05645	0.60	+0.9
1,261,136	-		DDA3937_RS05645	0.61	-0.3
1,261,361	+		DDA3937_RS05645	0.79	+2.5
1,261,361	+		DDA3937_RS05645	0.79	-1.8
1,261,361	+		DDA3937_RS05645	0.79	-1.9
1,261,362	-		DDA3937_RS05645	0.79	+1.5
1,261,362	-		DDA3937_RS05645	0.79	+1.0
1,261,438	+		DDA3937_RS05645	0.85	+0.7
1,261,438	+		DDA3937_RS05645	0.85	+1.4
1,261,439	-		DDA3937_RS05645	0.85	+1.2
1,261,439	-		DDA3937_RS05645	0.85	+0.3
1,261,439	-		DDA3937_RS05645	0.85	+1.1
1,261,447	+		DDA3937_RS05645	0.86	+1.8
1,261,448	-		DDA3937_RS05645	0.86	+0.2
1,261,474	+		DDA3937_RS05645	0.88	+1.5
1,261,479	+		DDA3937_RS05645	0.88	+0.7
1,261,480	-		DDA3937_RS05645	0.88	+0.1
1,261,505	+				+1.0
1,261,505	+				-1.6
1,261,507	-				+1.4
1,261,535	-				+0.7
1,261,626	-				-0.5
1,261,647	+				+0.8
1,261,715	+				-0.8
1,261,715	+				+0.2
1,261,715	+				+3.6
1,261,715	+				+1.5
1,261,715	+				-0.5
1,261,715	+				-1.8
1,261,715	+				-0.8
1,261,715	+				-2.4
1,261,716	-				-1.3
1,261,716	-				-1.3
1,261,727	+				+1.7
1,261,727	+				-1.1
1,261,728	-				+1.9
1,261,728	-				-2.4
1,261,728	-				+2.1
1,261,729	+				+0.7
1,261,729	+				-1.3
1,261,729	+				-0.0
1,261,737	+				+3.1
1,261,738	-				-1.1
1,261,741	+				-1.1
1,261,741	+				-0.5
1,261,741	+				-1.8
1,261,742	-				+0.8
1,261,802	+				+3.3
1,261,802	+				+4.4
1,261,815	+				-1.7
1,261,945	-				-0.7
1,262,237	-		DDA3937_RS05650	0.18	-1.5
1,262,289	+		DDA3937_RS05650	0.20	+1.1
1,262,332	-		DDA3937_RS05650	0.22	-2.1
1,262,653	-		DDA3937_RS05650	0.35	-1.1
1,262,653	-		DDA3937_RS05650	0.35	-1.3
1,262,696	-				-0.1
1,262,945	-		DDA3937_RS05650	0.48	-0.5
1,262,945	-		DDA3937_RS05650	0.48	+0.5
1,263,007	+		DDA3937_RS05650	0.50	-2.6
1,263,007	+		DDA3937_RS05650	0.50	-1.7
1,263,007	+		DDA3937_RS05650	0.50	+0.0
1,263,007	+		DDA3937_RS05650	0.50	-0.2
1,263,008	-		DDA3937_RS05650	0.50	-1.5
1,263,008	-		DDA3937_RS05650	0.50	-1.2
1,263,197	-		DDA3937_RS05650	0.58	-1.3
1,263,244	-		DDA3937_RS05650	0.60	-2.9
1,263,268	-		DDA3937_RS05650	0.61	-0.8
1,263,418	+		DDA3937_RS05650	0.68	+0.1
1,263,747	-		DDA3937_RS05650	0.82	-1.1
1,264,142	-				-0.2
1,264,142	-				+3.2
1,264,185	+				+1.9
1,264,219	-				-0.1
1,264,223	-				+2.7
1,264,312	+				+3.0
1,264,312	+				+1.7
1,264,318	+				+2.2
1,264,318	+				-0.8
1,264,318	+				-0.2
1,264,319	-				-0.5
1,264,345	-				-0.2
1,264,348	-				-2.0
1,264,348	-				-3.7
1,264,348	-				-1.0
1,264,353	+				-2.3
1,264,353	+				+0.9
1,264,419	-		DDA3937_RS05655	0.16	-1.7
1,264,458	-		DDA3937_RS05655	0.31	+2.8
1,264,469	+		DDA3937_RS05655	0.35	+0.3
1,264,470	-		DDA3937_RS05655	0.35	-0.7
1,264,505	-		DDA3937_RS05655	0.48	+0.2
1,264,517	+		DDA3937_RS05655	0.52	+0.2
1,264,517	+		DDA3937_RS05655	0.52	-2.9
1,264,518	-		DDA3937_RS05655	0.53	-2.4
1,264,556	+		DDA3937_RS05655	0.67	-2.2
1,264,556	+		DDA3937_RS05655	0.67	-1.9
1,264,584	-		DDA3937_RS05655	0.77	+0.4
1,264,650	+				-3.0
1,264,650	+				-0.1
1,264,651	-				-2.0
1,264,651	-				+0.8
1,264,651	-				-2.5
1,264,652	+				+0.7
1,264,652	+				-2.9
1,264,652	+				-2.6
1,264,652	+				+1.2
1,264,652	+				+1.8
1,264,652	+				-1.2
1,264,652	+				+1.1
1,264,652	+				-0.3
1,264,653	-				-0.7
1,264,653	-				-0.5
1,264,653	-				-2.3
1,264,653	-				-0.9
1,264,653	-				+0.3
1,264,653	-				-1.8
1,264,653	-				-0.7
1,264,653	-				-1.9
1,264,653	-				-2.3
1,264,653	-				-0.6
1,264,697	+				-2.1
1,264,698	-				+2.2
1,264,724	-				+1.0
1,264,724	-				-0.9
1,264,728	+				-2.0
1,264,728	+				-1.6
1,264,728	+				-2.0
1,264,728	+				+0.2
1,264,728	+				-1.1
1,264,729	-				-3.0
1,264,729	-				-1.1
1,264,729	-				-1.1
1,264,729	-				-2.0
1,264,729	-				-4.7
1,264,730	+				-1.1
1,264,730	+				+0.5
1,264,730	+				+1.1
1,264,731	-				-3.6
1,264,731	-				-2.5
1,264,731	-				-0.7
1,264,731	-				+1.6
1,264,745	+				+0.6
1,264,745	+				+2.1
1,264,773	-				+1.8
1,264,778	+				+3.5
1,264,778	+				+0.3
1,264,778	+				+0.4
1,264,778	+				-0.4
1,264,779	-				+0.9
1,264,785	-				-0.3
1,264,824	+				+1.2
1,264,826	+				+1.5
1,264,826	+				-1.4
1,264,826	+				-1.6
1,264,826	+				+0.9
1,264,826	+				-1.5
1,264,832	+				-1.8
1,264,832	+				+2.2
1,264,882	-				-2.1
1,264,902	+				-1.2
1,264,902	+				-3.5
1,264,902	+				-1.0
1,264,902	+				+0.2
1,264,902	+				+1.4
1,264,903	-				-2.0
1,264,903	-				+0.7
1,264,903	-				-1.3
1,265,000	-				-0.9
1,265,006	+				+0.7
1,265,006	+				-1.3
1,265,006	+				-2.9
1,265,007	-				-0.8
1,265,007	-				-2.5
1,265,149	+		DDA3937_RS05660	0.13	-0.1
1,265,149	+		DDA3937_RS05660	0.13	-1.7
1,265,149	+		DDA3937_RS05660	0.13	-2.0
1,265,149	+				-0.1
1,265,150	-		DDA3937_RS05660	0.13	-1.3
1,265,150	-		DDA3937_RS05660	0.13	-2.5
1,265,151	+		DDA3937_RS05660	0.13	-1.3
1,265,151	+		DDA3937_RS05660	0.13	-2.5
1,265,151	+		DDA3937_RS05660	0.13	-1.2
1,265,151	+		DDA3937_RS05660	0.13	+3.2
1,265,152	-		DDA3937_RS05660	0.13	-1.1
1,265,152	-		DDA3937_RS05660	0.13	-2.3
1,265,152	-		DDA3937_RS05660	0.13	-2.5
1,265,152	-		DDA3937_RS05660	0.13	-0.2
1,265,152	-		DDA3937_RS05660	0.13	+1.1