Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05590 and DDA3937_RS05595 are separated by 289 nucleotides DDA3937_RS05595 and DDA3937_RS05600 are separated by 16 nucleotides DDA3937_RS05600 and DDA3937_RS05605 overlap by 1 nucleotides DDA3937_RS05605 and DDA3937_RS05610 overlap by 11 nucleotides
DDA3937_RS05590: DDA3937_RS05590 - AraC family transcriptional regulator, at 1,248,332 to 1,249,243
_RS05590
DDA3937_RS05595: DDA3937_RS05595 - protoheme IX farnesyltransferase, at 1,249,533 to 1,250,423
_RS05595
DDA3937_RS05600: DDA3937_RS05600 - cytochrome o ubiquinol oxidase subunit IV, at 1,250,440 to 1,250,772
_RS05600
DDA3937_RS05605: DDA3937_RS05605 - cytochrome o ubiquinol oxidase subunit III, at 1,250,772 to 1,251,386
_RS05605
DDA3937_RS05610: DDA3937_RS05610 - cytochrome o ubiquinol oxidase subunit I, at 1,251,376 to 1,253,367
_RS05610
Position (kb) 1249
1250
1251 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1248.542 kb on - strand, within DDA3937_RS05590 at 1248.542 kb on - strand, within DDA3937_RS05590 at 1248.672 kb on - strand, within DDA3937_RS05590 at 1248.829 kb on + strand, within DDA3937_RS05590 at 1248.829 kb on + strand, within DDA3937_RS05590 at 1248.830 kb on - strand, within DDA3937_RS05590 at 1248.832 kb on + strand, within DDA3937_RS05590 at 1248.833 kb on - strand, within DDA3937_RS05590 at 1248.833 kb on - strand, within DDA3937_RS05590 at 1248.913 kb on + strand, within DDA3937_RS05590 at 1248.914 kb on - strand, within DDA3937_RS05590 at 1248.914 kb on - strand, within DDA3937_RS05590 at 1248.917 kb on + strand, within DDA3937_RS05590 at 1248.917 kb on + strand, within DDA3937_RS05590 at 1248.917 kb on + strand, within DDA3937_RS05590 at 1248.918 kb on - strand, within DDA3937_RS05590 at 1248.918 kb on - strand, within DDA3937_RS05590 at 1248.940 kb on + strand, within DDA3937_RS05590 at 1248.940 kb on + strand, within DDA3937_RS05590 at 1248.944 kb on + strand, within DDA3937_RS05590 at 1248.944 kb on + strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1249.197 kb on + strand at 1249.198 kb on - strand at 1249.198 kb on - strand at 1249.198 kb on - strand at 1249.198 kb on - strand at 1249.214 kb on + strand at 1249.214 kb on + strand at 1249.214 kb on + strand at 1249.221 kb on - strand at 1249.221 kb on - strand at 1249.268 kb on + strand at 1249.334 kb on + strand at 1249.404 kb on - strand at 1249.445 kb on + strand at 1249.445 kb on + strand at 1249.445 kb on + strand at 1249.445 kb on + strand at 1249.514 kb on - strand at 1249.527 kb on + strand at 1249.532 kb on - strand at 1249.532 kb on - strand at 1249.532 kb on - strand at 1249.543 kb on + strand at 1249.730 kb on - strand, within DDA3937_RS05595 at 1249.730 kb on - strand, within DDA3937_RS05595 at 1249.790 kb on + strand, within DDA3937_RS05595 at 1249.800 kb on - strand, within DDA3937_RS05595 at 1250.320 kb on + strand, within DDA3937_RS05595 at 1250.418 kb on - strand at 1250.418 kb on - strand at 1251.108 kb on - strand, within DDA3937_RS05605
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,248,542 - DDA3937_RS05590 0.23 -1.7 1,248,542 - DDA3937_RS05590 0.23 +0.1 1,248,672 - DDA3937_RS05590 0.37 -1.2 1,248,829 + DDA3937_RS05590 0.54 -2.5 1,248,829 + DDA3937_RS05590 0.54 +1.0 1,248,830 - DDA3937_RS05590 0.55 -0.8 1,248,832 + DDA3937_RS05590 0.55 +0.8 1,248,833 - DDA3937_RS05590 0.55 -1.9 1,248,833 - DDA3937_RS05590 0.55 -2.6 1,248,913 + DDA3937_RS05590 0.64 -0.2 1,248,914 - DDA3937_RS05590 0.64 -1.1 1,248,914 - DDA3937_RS05590 0.64 -1.4 1,248,917 + DDA3937_RS05590 0.64 -2.6 1,248,917 + DDA3937_RS05590 0.64 -2.5 1,248,917 + DDA3937_RS05590 0.64 -2.3 1,248,918 - DDA3937_RS05590 0.64 -1.9 1,248,918 - DDA3937_RS05590 0.64 +1.6 1,248,940 + DDA3937_RS05590 0.67 +1.2 1,248,940 + DDA3937_RS05590 0.67 +1.8 1,248,944 + DDA3937_RS05590 0.67 -1.4 1,248,944 + DDA3937_RS05590 0.67 +1.2 1,248,945 - DDA3937_RS05590 0.67 -4.6 1,248,945 - DDA3937_RS05590 0.67 +3.5 1,248,945 - DDA3937_RS05590 0.67 +1.7 1,248,945 - DDA3937_RS05590 0.67 +0.2 1,248,945 - DDA3937_RS05590 0.67 -1.9 1,249,197 + -1.5 1,249,198 - -0.5 1,249,198 - -1.2 1,249,198 - -2.4 1,249,198 - -3.5 1,249,214 + -1.8 1,249,214 + -3.4 1,249,214 + +2.0 1,249,221 - -3.4 1,249,221 - +1.2 1,249,268 + -0.5 1,249,334 + -3.4 1,249,404 - -2.7 1,249,445 + -1.7 1,249,445 + -1.7 1,249,445 + +4.5 1,249,445 + -1.3 1,249,514 - -1.8 1,249,527 + +1.3 1,249,532 - +1.5 1,249,532 - -0.8 1,249,532 - +0.8 1,249,543 + -1.7 1,249,730 - DDA3937_RS05595 0.22 -0.1 1,249,730 - DDA3937_RS05595 0.22 -1.3 1,249,790 + DDA3937_RS05595 0.29 -1.9 1,249,800 - DDA3937_RS05595 0.30 -1.1 1,250,320 + DDA3937_RS05595 0.88 -0.7 1,250,418 - -0.3 1,250,418 - -0.5 1,251,108 - DDA3937_RS05605 0.55 +0.5
Or see this region's nucleotide sequence