Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05415

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,206,133	+				+0.2
1,206,155	+				+0.4
1,206,155	+				+0.0
1,206,155	+				-0.8
1,206,155	+				-1.4
1,206,156	-				-1.7
1,206,156	-				-2.4
1,206,156	-				-4.3
1,206,156	-				-0.8
1,206,156	-				-3.0
1,206,160	-				-1.4
1,206,160	-				-0.1
1,206,168	-				+0.1
1,206,292	-		DDA3937_RS05410	0.16	-0.9
1,206,434	+		DDA3937_RS05410	0.31	-1.7
1,206,434	+		DDA3937_RS05410	0.31	+0.7
1,206,677	-		DDA3937_RS05410	0.58	-2.9
1,206,677	-		DDA3937_RS05410	0.58	-3.6
1,206,677	-		DDA3937_RS05410	0.58	-1.3
1,206,736	+		DDA3937_RS05410	0.64	-2.3
1,206,829	+		DDA3937_RS05410	0.75	-1.6
1,206,830	-		DDA3937_RS05410	0.75	-1.6
1,206,830	-		DDA3937_RS05410	0.75	-3.1
1,206,928	+		DDA3937_RS05410	0.86	+0.7
1,206,928	+		DDA3937_RS05410	0.86	+2.3
1,206,928	+		DDA3937_RS05410	0.86	-1.2
1,206,929	-		DDA3937_RS05410	0.86	-1.3
1,206,929	-		DDA3937_RS05410	0.86	+0.8
1,206,929	-		DDA3937_RS05410	0.86	+0.1
1,206,981	+				+3.1
1,207,096	+				-1.6
1,207,172	+				-1.5
1,207,173	-				-0.5
1,207,478	-		DDA3937_RS05415	0.10	-0.7
1,207,478	-		DDA3937_RS05415	0.10	-2.9
1,207,497	+		DDA3937_RS05415	0.11	-2.0
1,207,497	+		DDA3937_RS05415	0.11	-1.1
1,207,497	+		DDA3937_RS05415	0.11	-0.0
1,207,497	+		DDA3937_RS05415	0.11	+0.8
1,207,498	-		DDA3937_RS05415	0.11	+0.5
1,207,498	-		DDA3937_RS05415	0.11	-2.1
1,207,498	-		DDA3937_RS05415	0.11	+0.4
1,207,597	+		DDA3937_RS05415	0.14	+0.5
1,207,598	-		DDA3937_RS05415	0.14	+0.8
1,208,239	+		DDA3937_RS05415	0.31	-1.6
1,208,239	+		DDA3937_RS05415	0.31	+0.0
1,208,466	+		DDA3937_RS05415	0.37	-1.5
1,208,466	+		DDA3937_RS05415	0.37	-3.1
1,208,595	+		DDA3937_RS05415	0.41	-1.8
1,208,615	+		DDA3937_RS05415	0.41	+1.5
1,208,616	-		DDA3937_RS05415	0.41	-1.3
1,208,776	+		DDA3937_RS05415	0.46	-2.6
1,208,777	-		DDA3937_RS05415	0.46	+3.0
1,209,088	+		DDA3937_RS05415	0.54	+3.4
1,209,166	-		DDA3937_RS05415	0.56	-0.8
1,209,213	+		DDA3937_RS05415	0.57	-1.3
1,209,214	-		DDA3937_RS05415	0.58	-0.0
1,209,214	-		DDA3937_RS05415	0.58	-2.9
1,209,243	-		DDA3937_RS05415	0.58	+2.7
1,209,400	+		DDA3937_RS05415	0.63	-1.3
1,209,400	+		DDA3937_RS05415	0.63	+0.1
1,209,401	-		DDA3937_RS05415	0.63	-3.9
1,209,441	+		DDA3937_RS05415	0.64	+0.2
1,209,441	+				-0.5
1,209,442	-		DDA3937_RS05415	0.64	-1.3
1,209,447	+		DDA3937_RS05415	0.64	-1.8
1,209,447	+		DDA3937_RS05415	0.64	-1.5
1,209,447	+		DDA3937_RS05415	0.64	-1.3
1,209,448	-		DDA3937_RS05415	0.64	+1.4
1,209,501	-		DDA3937_RS05415	0.65	+1.5
1,209,501	-		DDA3937_RS05415	0.65	+1.2
1,209,528	-		DDA3937_RS05415	0.66	+1.1
1,209,639	-		DDA3937_RS05415	0.69	-0.7
1,209,639	-		DDA3937_RS05415	0.69	-1.9
1,209,707	+		DDA3937_RS05415	0.71	-2.4
1,209,707	+		DDA3937_RS05415	0.71	+0.5
1,209,708	-		DDA3937_RS05415	0.71	-1.8
1,209,708	-		DDA3937_RS05415	0.71	-1.6
1,209,708	-		DDA3937_RS05415	0.71	-1.9
1,209,708	-		DDA3937_RS05415	0.71	+0.9
1,209,708	-		DDA3937_RS05415	0.71	-0.8
1,209,708	-		DDA3937_RS05415	0.71	+0.7
1,209,708	-		DDA3937_RS05415	0.71	-1.1
1,209,716	+		DDA3937_RS05415	0.71	-3.8
1,209,938	+				+0.5
1,209,939	-		DDA3937_RS05415	0.77	-1.3
1,210,238	-		DDA3937_RS05415	0.85	-2.1
1,210,241	+		DDA3937_RS05415	0.85	+0.3
1,210,241	+		DDA3937_RS05415	0.85	+1.2
1,210,242	-		DDA3937_RS05415	0.85	+1.4
1,210,242	-		DDA3937_RS05415	0.85	-2.6
1,210,364	+		DDA3937_RS05415	0.89	+1.9
1,210,364	+		DDA3937_RS05415	0.89	-0.9
1,210,368	-		DDA3937_RS05415	0.89	-1.9
1,210,440	+				-2.5
1,210,475	+				-1.6
1,210,475	+				-0.1
1,210,615	+				-2.4
1,210,616	-				+0.9
1,210,616	-				+1.1
1,210,738	-				-1.5
1,210,910	+		DDA3937_RS05420	0.11	-1.9
1,210,910	+		DDA3937_RS05420	0.11	-2.2
1,210,910	+		DDA3937_RS05420	0.11	+1.2
1,210,911	-		DDA3937_RS05420	0.11	-1.5
1,211,043	+		DDA3937_RS05420	0.22	+0.7
1,211,043	+		DDA3937_RS05420	0.22	-0.5
1,211,044	-		DDA3937_RS05420	0.22	+0.7
1,211,094	+		DDA3937_RS05420	0.26	+0.1
1,211,094	+		DDA3937_RS05420	0.26	+0.2
1,211,223	+		DDA3937_RS05420	0.36	+0.5
1,211,223	+		DDA3937_RS05420	0.36	+0.8
1,211,223	+		DDA3937_RS05420	0.36	-2.7
1,211,223	+		DDA3937_RS05420	0.36	-1.4
1,211,224	-		DDA3937_RS05420	0.36	+0.2
1,211,324	-		DDA3937_RS05420	0.45	-1.2
1,211,324	-		DDA3937_RS05420	0.45	+2.3
1,211,340	+		DDA3937_RS05420	0.46	-1.0
1,211,341	-		DDA3937_RS05420	0.46	-1.8
1,211,341	-		DDA3937_RS05420	0.46	+0.5
1,211,341	-		DDA3937_RS05420	0.46	+2.1
1,211,389	+		DDA3937_RS05420	0.50	-0.8
1,211,391	+		DDA3937_RS05420	0.50	-2.7
1,211,391	+		DDA3937_RS05420	0.50	-1.9
1,211,391	+		DDA3937_RS05420	0.50	-0.1
1,211,391	+		DDA3937_RS05420	0.50	-1.5
1,211,391	+		DDA3937_RS05420	0.50	-1.6
1,211,391	+		DDA3937_RS05420	0.50	-1.6
1,211,391	+		DDA3937_RS05420	0.50	-3.5
1,211,392	-		DDA3937_RS05420	0.50	-0.6
1,211,392	-		DDA3937_RS05420	0.50	+0.4
1,211,392	-		DDA3937_RS05420	0.50	-0.5
1,211,392	-		DDA3937_RS05420	0.50	-1.9
1,211,392	-		DDA3937_RS05420	0.50	-1.1
1,211,392	-		DDA3937_RS05420	0.50	+0.2
1,211,392	-		DDA3937_RS05420	0.50	+1.4
1,211,392	-		DDA3937_RS05420	0.50	+1.9
1,211,392	-		DDA3937_RS05420	0.50	-2.4
1,211,392	-		DDA3937_RS05420	0.50	-1.5
1,211,395	+		DDA3937_RS05420	0.50	-0.8
1,211,395	+		DDA3937_RS05420	0.50	-1.1
1,211,395	+		DDA3937_RS05420	0.50	-0.7
1,211,395	+		DDA3937_RS05420	0.50	-1.9
1,211,396	-		DDA3937_RS05420	0.50	+1.6
1,211,514	+		DDA3937_RS05420	0.60	-0.2
1,211,515	-		DDA3937_RS05420	0.60	-0.2
1,211,515	-		DDA3937_RS05420	0.60	-1.6