Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05360

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,193,412	+		DDA3937_RS05355	0.70	-0.3
1,193,413	-		DDA3937_RS05355	0.70	-0.6
1,193,413	-		DDA3937_RS05355	0.70	-0.1
1,193,413	-		DDA3937_RS05355	0.70	-1.6
1,193,432	+		DDA3937_RS05355	0.72	-0.3
1,193,476	+		DDA3937_RS05355	0.75	+0.9
1,193,614	-		DDA3937_RS05355	0.84	+0.6
1,193,704	+				-2.5
1,193,704	+				+1.2
1,193,705	-				-0.9
1,193,713	-				-1.9
1,193,800	+				-0.3
1,193,842	+				-1.5
1,193,842	+				-1.5
1,193,842	+				-0.8
1,193,842	+				-2.4
1,193,842	+				-1.6
1,193,842	+				-1.6
1,193,842	+				-1.1
1,193,842	+				-0.1
1,193,843	-				+0.5
1,193,843	-				-0.9
1,193,843	-				-0.5
1,193,843	-				-1.9
1,193,843	-				+0.3
1,193,843	-				-0.3
1,193,885	+				-3.5
1,193,885	+				-1.6
1,193,885	+				+1.5
1,193,885	+				+2.3
1,193,885	+				+1.5
1,193,886	-				-2.2
1,193,886	-				+0.2
1,193,886	-				+0.9
1,193,886	-				-0.7
1,193,886	-				-2.5
1,193,892	+				+0.7
1,193,892	+				+2.1
1,193,892	+				-0.8
1,193,892	+				+0.1
1,193,892	+				-1.4
1,193,892	+				-0.8
1,193,892	+				-2.4
1,193,892	+				-0.1
1,193,893	-				-0.7
1,193,893	-				-1.1
1,193,893	-				-2.7
1,193,893	-				-0.6
1,193,916	+				-0.0
1,193,916	+				-0.3
1,193,916	+				-0.1
1,193,916	+				-1.4
1,193,916	+				-2.6
1,193,916	+				-1.8
1,193,916	+				-0.8
1,193,917	-				+0.9
1,194,020	+				-1.9
1,194,020	+				+0.3
1,194,021	-				-1.6
1,194,021	-				+1.6
1,194,021	-				-2.1
1,194,036	+				-3.1
1,194,243	+		DDA3937_RS05360	0.24	-0.5
1,194,244	-		DDA3937_RS05360	0.24	+1.2
1,194,244	-		DDA3937_RS05360	0.24	-0.8
1,194,244	-		DDA3937_RS05360	0.24	+1.7
1,194,305	+		DDA3937_RS05360	0.31	-1.3
1,194,305	+		DDA3937_RS05360	0.31	+2.1
1,194,305	+		DDA3937_RS05360	0.31	+0.1
1,194,315	-		DDA3937_RS05360	0.32	+1.0
1,194,693	+		DDA3937_RS05360	0.72	-0.8
1,194,693	+		DDA3937_RS05360	0.72	-1.6
1,194,693	+		DDA3937_RS05360	0.72	-2.9
1,194,694	-		DDA3937_RS05360	0.72	+0.7
1,194,694	-		DDA3937_RS05360	0.72	+1.3
1,194,696	+		DDA3937_RS05360	0.72	-2.9
1,194,696	+		DDA3937_RS05360	0.72	+2.2
1,194,696	+		DDA3937_RS05360	0.72	+1.4
1,194,697	-		DDA3937_RS05360	0.72	-2.3
1,194,697	-		DDA3937_RS05360	0.72	+1.4
1,194,697	-		DDA3937_RS05360	0.72	-1.9
1,194,842	+		DDA3937_RS05360	0.88	-2.2
1,194,863	-				+1.2
1,194,969	+				+1.8
1,194,976	+				+0.4
1,195,063	+		DDA3937_RS05365	0.12	-0.1
1,195,063	+		DDA3937_RS05365	0.12	-1.2
1,195,063	+		DDA3937_RS05365	0.12	+0.1
1,195,063	+		DDA3937_RS05365	0.12	+0.6
1,195,063	+		DDA3937_RS05365	0.12	+0.4
1,195,114	+		DDA3937_RS05365	0.19	+0.7
1,195,192	+		DDA3937_RS05365	0.31	+1.9
1,195,192	+		DDA3937_RS05365	0.31	-2.1
1,195,211	+		DDA3937_RS05365	0.34	-0.8
1,195,320	-		DDA3937_RS05365	0.51	-0.5
1,195,471	+		DDA3937_RS05365	0.74	-3.5
1,195,471	+		DDA3937_RS05365	0.74	-1.1
1,195,472	-		DDA3937_RS05365	0.74	-0.6
1,195,472	-		DDA3937_RS05365	0.74	-0.2
1,195,472	-		DDA3937_RS05365	0.74	+1.0
1,195,477	+		DDA3937_RS05365	0.75	-2.2
1,195,477	+		DDA3937_RS05365	0.75	-0.8
1,195,477	+		DDA3937_RS05365	0.75	-3.0
1,195,477	+		DDA3937_RS05365	0.75	-3.7
1,195,477	+		DDA3937_RS05365	0.75	+1.9
1,195,477	+		DDA3937_RS05365	0.75	-3.0
1,195,477	+		DDA3937_RS05365	0.75	-1.3
1,195,477	+		DDA3937_RS05365	0.75	-2.2
1,195,477	+		DDA3937_RS05365	0.75	-1.8
1,195,477	+		DDA3937_RS05365	0.75	-4.1
1,195,478	-		DDA3937_RS05365	0.75	-1.4
1,195,478	-		DDA3937_RS05365	0.75	-1.1
1,195,478	-		DDA3937_RS05365	0.75	+1.5
1,195,478	-		DDA3937_RS05365	0.75	-0.4
1,195,478	-		DDA3937_RS05365	0.75	-0.5
1,195,478	-		DDA3937_RS05365	0.75	+4.0
1,195,478	-		DDA3937_RS05365	0.75	-2.3
1,195,478	-		DDA3937_RS05365	0.75	-2.7
1,195,504	+		DDA3937_RS05365	0.79	-0.8
1,195,504	+		DDA3937_RS05365	0.79	+0.4
1,195,504	+		DDA3937_RS05365	0.79	-0.9
1,195,504	+		DDA3937_RS05365	0.79	-2.2
1,195,505	-		DDA3937_RS05365	0.79	+2.0
1,195,507	+		DDA3937_RS05365	0.79	-1.4
1,195,507	+		DDA3937_RS05365	0.79	+1.4
1,195,507	+		DDA3937_RS05365	0.79	+0.4
1,195,507	+		DDA3937_RS05365	0.79	-0.2
1,195,507	+		DDA3937_RS05365	0.79	-0.5
1,195,507	+		DDA3937_RS05365	0.79	-0.0
1,195,508	-		DDA3937_RS05365	0.79	+2.3
1,195,508	-		DDA3937_RS05365	0.79	+0.9
1,195,508	-		DDA3937_RS05365	0.79	+1.7
1,195,508	-		DDA3937_RS05365	0.79	-1.4
1,195,508	-		DDA3937_RS05365	0.79	-0.1
1,195,536	+		DDA3937_RS05365	0.84	+0.4
1,195,536	+		DDA3937_RS05365	0.84	+1.5
1,195,536	+		DDA3937_RS05365	0.84	-3.2
1,195,536	+		DDA3937_RS05365	0.84	+0.4
1,195,537	-		DDA3937_RS05365	0.84	-1.5
1,195,635	+				-0.8
1,195,636	-				+0.7
1,195,636	-				-2.4
1,195,726	+				+1.2
1,195,727	-				-1.9
1,195,799	+				-0.5
1,195,800	-				-3.4
1,195,800	-				-2.1
1,195,819	+				-0.5
1,195,819	+				-2.2
1,195,819	+				-1.9
1,195,820	-				+1.5
1,195,839	+				+1.9
1,195,839	+				-3.4
1,195,839	+				-0.8
1,195,839	+				+1.3
1,195,840	-				+3.1
1,195,840	-				-1.5
1,195,840	-				-2.4
1,195,840	-				-0.1
1,195,840	-				-2.5
1,195,851	-				+0.7
1,195,851	-				+2.1
1,195,879	+		DDA3937_RS05370	0.11	-0.6
1,195,944	+		DDA3937_RS05370	0.16	-1.3
1,195,945	-		DDA3937_RS05370	0.16	-2.4