Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04900

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,097,488	+				-0.1
1,097,488	+				-0.4
1,097,489	-				+1.9
1,097,489	-				+1.5
1,097,507	-				-1.1
1,097,571	-		DDA3937_RS04895	0.31	-0.8
1,097,580	+		DDA3937_RS04895	0.34	-1.8
1,097,581	-		DDA3937_RS04895	0.34	+0.7
1,097,581	-		DDA3937_RS04895	0.34	+0.5
1,097,581	-				-0.8
1,097,669	-		DDA3937_RS04895	0.67	+0.2
1,097,669	-		DDA3937_RS04895	0.67	-3.4
1,097,669	-		DDA3937_RS04895	0.67	-2.2
1,097,669	-		DDA3937_RS04895	0.67	-0.8
1,097,773	+				+1.3
1,097,773	+				-2.6
1,097,773	+				+0.5
1,097,774	-				-0.1
1,097,835	-				-0.8
1,097,871	-		DDA3937_RS04900	0.11	-1.1
1,097,871	-		DDA3937_RS04900	0.11	+3.0
1,097,875	+		DDA3937_RS04900	0.11	-1.7
1,097,875	+		DDA3937_RS04900	0.11	-1.9
1,097,876	-		DDA3937_RS04900	0.11	+1.6
1,097,876	-		DDA3937_RS04900	0.11	+1.1
1,097,876	-		DDA3937_RS04900	0.11	+0.5
1,097,876	-		DDA3937_RS04900	0.11	-1.1
1,097,876	-		DDA3937_RS04900	0.11	-0.8
1,097,877	+		DDA3937_RS04900	0.11	-1.5
1,097,878	-		DDA3937_RS04900	0.11	-0.8
1,098,069	+		DDA3937_RS04900	0.29	-1.5
1,098,137	+		DDA3937_RS04900	0.35	-2.4
1,098,137	+		DDA3937_RS04900	0.35	-1.6
1,098,202	+		DDA3937_RS04900	0.41	-0.4
1,098,202	+		DDA3937_RS04900	0.41	-3.2
1,098,203	-		DDA3937_RS04900	0.41	+1.8
1,098,203	-		DDA3937_RS04900	0.41	+2.2
1,098,203	-		DDA3937_RS04900	0.41	+0.5
1,098,203	-		DDA3937_RS04900	0.41	-1.5
1,098,209	-		DDA3937_RS04900	0.41	+0.6
1,098,209	-		DDA3937_RS04900	0.41	+0.1
1,098,354	-		DDA3937_RS04900	0.55	-0.4
1,098,354	-		DDA3937_RS04900	0.55	-2.6
1,098,400	-		DDA3937_RS04900	0.59	-1.7
1,098,597	+		DDA3937_RS04900	0.77	-1.5
1,098,598	-		DDA3937_RS04900	0.77	-2.6
1,098,600	+		DDA3937_RS04900	0.77	+1.2
1,098,601	-		DDA3937_RS04900	0.77	-0.2
1,098,679	+		DDA3937_RS04900	0.85	+3.9
1,098,700	+		DDA3937_RS04900	0.86	-3.2
1,098,725	+		DDA3937_RS04900	0.89	-1.3
1,098,725	+		DDA3937_RS04900	0.89	-0.5
1,098,725	+		DDA3937_RS04900	0.89	-0.1
1,098,725	+		DDA3937_RS04900	0.89	+1.7
1,098,726	-		DDA3937_RS04900	0.89	-3.4
1,098,731	+		DDA3937_RS04900	0.89	-1.1
1,098,731	+		DDA3937_RS04900	0.89	-0.1
1,098,731	+		DDA3937_RS04900	0.89	-1.1
1,098,732	-		DDA3937_RS04900	0.89	-1.5
1,098,732	-		DDA3937_RS04900	0.89	+1.5
1,098,732	-		DDA3937_RS04900	0.89	+1.0
1,098,751	+				-2.5
1,098,751	+				-0.4
1,098,751	+				-3.6
1,098,752	-				-1.7
1,098,752	-				-1.7
1,098,752	-				+1.8
1,098,753	+				-2.9
1,098,754	-				+0.7
1,098,787	+				+1.5
1,098,796	-				-0.7
1,098,804	+				-1.5
1,098,804	+				-0.5
1,098,815	+				-0.3
1,098,815	+				-1.9
1,098,816	-				-2.1
1,098,847	+				-1.9
1,098,848	-				-1.7
1,098,848	-				+0.3
1,098,848	-				+1.2
1,098,848	-				-0.7
1,098,906	+				-0.1
1,098,906	+				-1.9
1,098,906	+				+1.3
1,098,906	+				-1.7
1,098,907	-				+1.2
1,098,912	-				-1.3
1,098,937	-				-1.1
1,098,937	-				+1.3
1,098,937	-				+0.1
1,098,943	+				+0.5
1,098,944	-				-1.5
1,098,944	-				-3.7
1,098,953	+				-2.7
1,098,953	+				+1.9
1,098,954	-				-0.5
1,098,963	+				+0.6
1,099,005	+				+1.9
1,099,005	+				-0.9
1,099,005	+				+1.9
1,099,005	+				+2.2
1,099,005	+				-1.3
1,099,006	-				+1.9
1,099,006	-				-0.1
1,099,014	+				+3.0
1,099,014	+				+1.4
1,099,015	-				+1.4
1,099,150	+		DDA3937_RS04905	0.20	-0.8
1,099,151	-		DDA3937_RS04905	0.20	-2.6
1,099,283	+		DDA3937_RS04905	0.39	+1.4
1,099,283	+		DDA3937_RS04905	0.39	+1.5
1,099,283	+		DDA3937_RS04905	0.39	-0.9
1,099,283	+		DDA3937_RS04905	0.39	+0.0
1,099,283	+		DDA3937_RS04905	0.39	-0.8
1,099,283	+		DDA3937_RS04905	0.39	+2.8
1,099,284	-		DDA3937_RS04905	0.39	-0.3
1,099,284	-				-0.8
1,099,284	-		DDA3937_RS04905	0.39	-0.2
1,099,284	-		DDA3937_RS04905	0.39	-1.4
1,099,284	-		DDA3937_RS04905	0.39	-2.7
1,099,284	-				+1.5
1,099,284	-		DDA3937_RS04905	0.39	-1.2
1,099,458	+		DDA3937_RS04905	0.63	+1.8
1,099,461	+		DDA3937_RS04905	0.63	+0.3
1,099,461	+		DDA3937_RS04905	0.63	-0.4
1,099,462	-		DDA3937_RS04905	0.64	+0.0
1,099,462	-		DDA3937_RS04905	0.64	-0.9
1,099,534	-		DDA3937_RS04905	0.74	-1.7
1,099,534	-		DDA3937_RS04905	0.74	-3.2
1,099,556	-		DDA3937_RS04905	0.77	-1.8
1,099,566	+		DDA3937_RS04905	0.78	+2.5
1,099,566	+		DDA3937_RS04905	0.78	+0.2
1,099,566	+		DDA3937_RS04905	0.78	+0.3
1,099,566	+		DDA3937_RS04905	0.78	+0.1
1,099,567	-		DDA3937_RS04905	0.78	-3.2
1,099,567	-		DDA3937_RS04905	0.78	-2.3
1,099,567	-		DDA3937_RS04905	0.78	+0.2
1,099,567	-		DDA3937_RS04905	0.78	+1.5
1,099,567	-		DDA3937_RS04905	0.78	-1.4
1,099,567	-		DDA3937_RS04905	0.78	+0.2
1,099,567	-		DDA3937_RS04905	0.78	+0.2
1,099,624	+		DDA3937_RS04905	0.86	+0.5
1,099,624	+		DDA3937_RS04905	0.86	+0.6
1,099,625	-		DDA3937_RS04905	0.86	+0.2
1,099,625	-		DDA3937_RS04905	0.86	+1.3
1,099,625	-		DDA3937_RS04905	0.86	+1.2
1,099,625	-		DDA3937_RS04905	0.86	+1.3
1,099,625	-		DDA3937_RS04905	0.86	-3.6
1,099,720	+				+2.1
1,099,720	+				-1.1
1,099,720	+				-4.3
1,099,720	+				-2.7
1,099,721	-				-2.6
1,099,721	-				+0.4
1,099,721	-				-4.1
1,099,723	+				-0.5
1,099,730	+				-1.1
1,099,730	+				+1.5
1,099,750	+				-1.2
1,099,750	+				-3.6
1,099,750	+				-1.5
1,099,754	+				-1.9
1,099,755	-				+1.1
1,099,798	+		DDA3937_RS04910	0.21	+1.3
1,099,799	-		DDA3937_RS04910	0.21	-0.7