Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04670

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,029,355	+		DDA3937_RS04665	0.55	+0.5
1,029,376	+		DDA3937_RS04665	0.59	-0.9
1,029,376	+		DDA3937_RS04665	0.59	-0.4
1,029,376	+		DDA3937_RS04665	0.59	+0.5
1,029,377	-		DDA3937_RS04665	0.59	-0.4
1,029,377	-		DDA3937_RS04665	0.59	+0.2
1,029,380	-		DDA3937_RS04665	0.60	-0.7
1,029,380	-		DDA3937_RS04665	0.60	-2.2
1,029,408	+		DDA3937_RS04665	0.64	-1.7
1,029,409	-		DDA3937_RS04665	0.64	-3.1
1,029,451	+		DDA3937_RS04665	0.71	+0.2
1,029,451	+		DDA3937_RS04665	0.71	-0.9
1,029,452	-		DDA3937_RS04665	0.71	+2.3
1,029,452	-		DDA3937_RS04665	0.71	-0.3
1,029,482	+		DDA3937_RS04665	0.76	+1.2
1,029,488	-		DDA3937_RS04665	0.77	+0.2
1,029,504	+		DDA3937_RS04665	0.80	+1.4
1,029,508	+		DDA3937_RS04665	0.80	+0.5
1,029,508	+		DDA3937_RS04665	0.80	-2.6
1,029,508	+		DDA3937_RS04665	0.80	+0.2
1,029,508	+		DDA3937_RS04665	0.80	-2.2
1,029,508	+		DDA3937_RS04665	0.80	-2.3
1,029,509	-		DDA3937_RS04665	0.80	+2.1
1,029,509	-		DDA3937_RS04665	0.80	+1.4
1,029,566	-		DDA3937_RS04665	0.90	-2.5
1,029,576	+				-2.9
1,029,576	+				-2.0
1,029,576	+				-0.3
1,029,577	-				+0.0
1,029,577	-				+0.0
1,029,577	-				-2.3
1,029,590	-				-1.1
1,029,595	+				-2.4
1,029,596	-				+1.2
1,029,599	-				+0.3
1,029,599	-				+0.8
1,029,670	-				-1.2
1,029,682	+				-0.4
1,029,682	+				+2.8
1,029,692	+				-1.9
1,029,693	-				-1.8
1,029,693	-				+2.3
1,029,742	+				-2.3
1,029,742	+				-1.8
1,029,742	+				-0.7
1,029,742	+				+0.8
1,029,743	-				+2.2
1,029,743	-				-0.6
1,029,743	-				+3.8
1,029,743	-				-3.4
1,029,743	-				+1.1
1,029,767	-				-0.4
1,029,769	+				+1.4
1,029,769	+				+4.3
1,029,777	+				-1.9
1,029,777	+				-0.9
1,029,801	+				+1.6
1,029,836	-				-0.2
1,029,838	+				-2.3
1,029,838	+				-1.5
1,029,838	+				-1.5
1,029,838	+				-0.1
1,029,838	+				-0.3
1,029,838	+				-0.3
1,029,839	-				+0.2
1,029,878	+				-1.8
1,029,917	-				-1.7
1,029,924	+				-1.0
1,029,924	+				-1.7
1,029,926	+				+1.7
1,029,926	+				-0.1
1,029,927	-				-0.5
1,029,932	+				-1.3
1,029,932	+				-0.5
1,029,933	-				+3.0
1,029,937	+				-2.2
1,029,937	+				-2.0
1,029,937	+				-0.2
1,029,938	-				-2.2
1,029,938	-				-0.3
1,029,938	-				-0.8
1,029,938	-				-0.6
1,029,943	+				-2.2
1,029,943	+				-2.3
1,029,943	+				-1.5
1,029,943	+				-0.5
1,029,943	+				-3.1
1,029,946	+				+2.4
1,029,946	+				-0.1
1,029,946	+				-2.0
1,029,951	+				+1.1
1,029,952	-				+1.0
1,029,952	-				-1.3
1,029,991	+				-0.7
1,029,991	+				-2.2
1,029,991	+				-0.5
1,030,114	+				-0.9
1,030,114	+				+0.2
1,030,114	+				-0.1
1,030,115	-				-2.6
1,030,115	-				-1.5
1,030,115	-				-1.3
1,030,118	+				-2.0
1,030,118	+				-1.3
1,030,119	-				-1.8
1,030,119	-				-4.2
1,030,149	+				-2.2
1,030,150	-				+0.8
1,030,150	-				+1.6
1,030,164	+				-1.5
1,030,164	+				-1.1
1,030,164	+				-1.3
1,030,164	+				+0.5
1,030,164	+				-0.6
1,030,165	-				-2.0
1,030,165	-				+0.7
1,030,165	-				-2.4
1,030,216	+				-0.4
1,030,317	+				-0.9
1,030,328	+				+1.9
1,030,328	+				-3.3
1,030,328	+				-0.5
1,030,328	+				-2.1
1,030,329	-				-0.4
1,030,329	-				-0.7
1,030,329	-				-1.3
1,030,329	-				-2.7
1,030,329	-				-3.3
1,030,329	-				+1.8
1,030,329	-				-2.9
1,030,329	-				-0.3
1,030,329	-				-0.8
1,030,329	-				-0.1
1,030,329	-				+0.8
1,030,329	-				-1.3
1,030,404	+				-0.7
1,030,405	-				+1.5
1,030,445	+				+0.1
1,030,446	-				-0.0
1,030,455	+				-2.0
1,030,455	+				+1.2
1,030,455	+				+0.4
1,030,455	+				+2.6
1,030,455	+				+1.9
1,030,455	+				+0.6
1,030,455	+				-0.3
1,030,455	+				-0.5
1,030,456	-				-1.5
1,030,456	-				-1.1
1,030,456	-				-1.5
1,030,456	-				+3.2
1,030,467	-		DDA3937_RS04670	0.10	+0.0
1,030,467	-		DDA3937_RS04670	0.10	+0.6
1,030,567	-		DDA3937_RS04670	0.16	-2.5
1,030,577	+		DDA3937_RS04670	0.16	+1.1
1,030,577	+		DDA3937_RS04670	0.16	-1.3
1,030,577	+		DDA3937_RS04670	0.16	-2.8
1,030,577	+		DDA3937_RS04670	0.16	+1.1
1,030,577	+		DDA3937_RS04670	0.16	-0.8
1,030,578	-		DDA3937_RS04670	0.16	-2.2
1,030,578	-		DDA3937_RS04670	0.16	-1.2
1,030,578	-		DDA3937_RS04670	0.16	-0.9
1,030,578	-		DDA3937_RS04670	0.16	-1.3
1,030,578	-				+0.5
1,030,578	-		DDA3937_RS04670	0.16	+0.9
1,030,611	+		DDA3937_RS04670	0.18	-1.1
1,030,611	+		DDA3937_RS04670	0.18	+0.6
1,030,612	-		DDA3937_RS04670	0.18	-3.4
1,030,612	-		DDA3937_RS04670	0.18	-3.0
1,030,612	-		DDA3937_RS04670	0.18	-3.2
1,030,620	+		DDA3937_RS04670	0.19	-2.4
1,030,641	-		DDA3937_RS04670	0.20	-4.7
1,030,641	-		DDA3937_RS04670	0.20	-0.9
1,030,641	-		DDA3937_RS04670	0.20	-3.2
1,030,654	-		DDA3937_RS04670	0.21	+0.7
1,030,654	-		DDA3937_RS04670	0.21	+2.5
1,030,837	+		DDA3937_RS04670	0.31	+0.1
1,030,838	-		DDA3937_RS04670	0.31	-0.4
1,030,890	-		DDA3937_RS04670	0.34	-2.7
1,030,904	+		DDA3937_RS04670	0.35	-1.7
1,030,905	-		DDA3937_RS04670	0.35	+0.4
1,030,970	+		DDA3937_RS04670	0.39	-0.3
1,030,978	-		DDA3937_RS04670	0.40	-0.0
1,030,986	+		DDA3937_RS04670	0.40	-0.4
1,030,987	-		DDA3937_RS04670	0.40	-1.9
1,030,987	-		DDA3937_RS04670	0.40	-1.3
1,031,180	+		DDA3937_RS04670	0.51	+0.1
1,031,180	+		DDA3937_RS04670	0.51	+0.2
1,031,180	+		DDA3937_RS04670	0.51	-0.9
1,031,181	-		DDA3937_RS04670	0.51	+2.9
1,031,181	-		DDA3937_RS04670	0.51	-2.1
1,031,181	-		DDA3937_RS04670	0.51	+2.0
1,031,181	-		DDA3937_RS04670	0.51	+1.5
1,031,181	-		DDA3937_RS04670	0.51	-0.8
1,031,198	+		DDA3937_RS04670	0.52	-2.2
1,031,229	+		DDA3937_RS04670	0.54	-2.1
1,031,257	-		DDA3937_RS04670	0.56	-0.1
1,031,261	+		DDA3937_RS04670	0.56	+0.3
1,031,261	+		DDA3937_RS04670	0.56	-4.1
1,031,261	+		DDA3937_RS04670	0.56	+2.8
1,031,262	-		DDA3937_RS04670	0.56	-1.3
1,031,262	-		DDA3937_RS04670	0.56	-3.6
1,031,262	-		DDA3937_RS04670	0.56	-3.3
1,031,262	-		DDA3937_RS04670	0.56	+0.9
1,031,262	-		DDA3937_RS04670	0.56	+1.2
1,031,262	-		DDA3937_RS04670	0.56	-2.4
1,031,262	-		DDA3937_RS04670	0.56	-1.8
1,031,262	-		DDA3937_RS04670	0.56	-0.1
1,031,262	-		DDA3937_RS04670	0.56	-2.1
1,031,271	+		DDA3937_RS04670	0.56	+0.7
1,031,272	-		DDA3937_RS04670	0.56	-2.0
1,031,321	+		DDA3937_RS04670	0.59	+0.8
1,031,321	+		DDA3937_RS04670	0.59	-1.0
1,031,322	-		DDA3937_RS04670	0.59	-0.5
1,031,325	-		DDA3937_RS04670	0.60	+0.3
1,031,325	-		DDA3937_RS04670	0.60	+1.2
1,031,325	-		DDA3937_RS04670	0.60	-2.0
1,031,325	-		DDA3937_RS04670	0.60	-1.1
1,031,414	+		DDA3937_RS04670	0.65	-1.1
1,031,423	+		DDA3937_RS04670	0.65	+0.3
1,031,489	+		DDA3937_RS04670	0.69	+1.3
1,031,489	+		DDA3937_RS04670	0.69	-2.5
1,031,489	+		DDA3937_RS04670	0.69	-0.4
1,031,489	+		DDA3937_RS04670	0.69	-0.1
1,031,490	-		DDA3937_RS04670	0.69	-0.1
1,031,490	-		DDA3937_RS04670	0.69	-1.9
1,031,490	-		DDA3937_RS04670	0.69	-2.1
1,031,495	-		DDA3937_RS04670	0.69	+1.2
1,031,615	+		DDA3937_RS04670	0.76	+0.7
1,031,615	+		DDA3937_RS04670	0.76	-1.6
1,031,616	-		DDA3937_RS04670	0.76	-2.0
1,031,616	-		DDA3937_RS04670	0.76	-2.6
1,031,616	-		DDA3937_RS04670	0.76	-1.6
1,031,616	-		DDA3937_RS04670	0.76	-2.3
1,031,616	-		DDA3937_RS04670	0.76	-2.9
1,031,621	+		DDA3937_RS04670	0.77	-0.7
1,031,657	+		DDA3937_RS04670	0.79	-2.0
1,031,657	+		DDA3937_RS04670	0.79	+1.3
1,031,657	+		DDA3937_RS04670	0.79	-0.9
1,031,658	-		DDA3937_RS04670	0.79	+1.7
1,031,691	+		DDA3937_RS04670	0.81	-2.4
1,031,694	-		DDA3937_RS04670	0.81	-2.5
1,031,694	-				-0.5
1,031,694	-		DDA3937_RS04670	0.81	+1.5
1,031,772	-		DDA3937_RS04670	0.85	-0.9
1,031,772	-		DDA3937_RS04670	0.85	+0.5
1,031,772	-		DDA3937_RS04670	0.85	-2.7
1,031,774	+		DDA3937_RS04670	0.85	+3.5
1,031,774	+		DDA3937_RS04670	0.85	-1.3
1,031,774	+		DDA3937_RS04670	0.85	-0.1
1,031,775	-		DDA3937_RS04670	0.86	-2.5
1,031,775	-		DDA3937_RS04670	0.86	+1.5
1,031,917	-				+0.5
1,031,977	+				+1.1
1,031,977	+				-0.7
1,031,978	-				+0.5
1,031,998	-				-0.3
1,032,019	-				-0.2
1,032,019	-				+0.9
1,032,019	-				+1.1
1,032,063	+				-2.4
1,032,075	+				-3.1
1,032,075	+				-2.5
1,032,075	+				-2.1
1,032,076	-				-0.0
1,032,076	-				-2.4
1,032,083	+				-0.5
1,032,083	+				-3.3
1,032,083	+				-1.7
1,032,084	-				+1.1
1,032,181	+				-2.8
1,032,182	-				-1.1
1,032,182	-				-2.4
1,032,231	-				-2.1
1,032,231	-				-2.4
1,032,320	+				+0.5
1,032,320	+				+0.1
1,032,320	+				-2.7
1,032,321	-				-2.2
1,032,321	-				-1.5
1,032,341	+				-0.5
1,032,349	-				+1.2
1,032,349	-				-2.1
1,032,376	+				-1.1
1,032,377	-				-0.7
1,032,383	+				+1.0
1,032,383	+				-1.5
1,032,383	+				-2.2
1,032,383	+				-0.1
1,032,383	+				+2.0
1,032,383	+				+1.1
1,032,384	-				-0.9
1,032,384	-				-3.0
1,032,384	-				-0.5
1,032,413	+				-0.9
1,032,436	-		DDA3937_RS04680	0.15	-0.6
1,032,747	+		DDA3937_RS04680	0.73	-1.9
1,032,770	+		DDA3937_RS04680	0.78	+3.6
1,032,770	+		DDA3937_RS04680	0.78	-2.5
1,032,770	+		DDA3937_RS04680	0.78	-2.5
1,032,771	-		DDA3937_RS04680	0.78	-1.5
1,032,881	-				-0.2
1,032,881	-				+0.1
1,032,887	+				-1.5
1,032,887	+				+0.5
1,032,887	+				-2.4
1,032,887	+				-0.0
1,032,888	-				-2.4
1,032,888	-				-2.2
1,032,888	-				-2.1
1,033,015	+				-2.4
1,033,015	+				-0.5
1,033,015	+				+0.9
1,033,015	+				-2.0
1,033,015	+				+1.1
1,033,016	-				+0.2
1,033,016	-				-0.8