Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04540

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,002,131	-		DDA3937_RS04535	0.38	-1.5
1,002,131	-		DDA3937_RS04535	0.38	-2.1
1,002,178	+		DDA3937_RS04535	0.41	-1.9
1,002,178	+		DDA3937_RS04535	0.41	+0.6
1,002,273	-		DDA3937_RS04535	0.47	+0.6
1,002,273	-		DDA3937_RS04535	0.47	-2.8
1,002,394	+		DDA3937_RS04535	0.55	+1.4
1,002,465	-		DDA3937_RS04535	0.60	+0.4
1,002,483	+		DDA3937_RS04535	0.61	+0.0
1,002,543	+		DDA3937_RS04535	0.65	-1.5
1,002,676	+		DDA3937_RS04535	0.74	-0.9
1,002,677	-		DDA3937_RS04535	0.74	-0.6
1,002,837	+		DDA3937_RS04535	0.84	-2.5
1,002,838	-		DDA3937_RS04535	0.84	+0.3
1,002,838	-		DDA3937_RS04535	0.84	-1.9
1,002,950	+				+1.4
1,002,951	-				-0.3
1,002,951	-				-2.8
1,002,967	+				-0.2
1,003,037	-				-0.5
1,003,229	+				+0.9
1,003,229	+				+2.5
1,003,230	-				+2.5
1,003,325	-		DDA3937_RS04540	0.12	+2.6
1,003,340	+		DDA3937_RS04540	0.13	+1.3
1,003,341	-		DDA3937_RS04540	0.13	+2.4
1,003,367	+		DDA3937_RS04540	0.15	+2.9
1,003,368	-		DDA3937_RS04540	0.15	-1.8
1,003,426	+		DDA3937_RS04540	0.18	+2.4
1,003,426	+		DDA3937_RS04540	0.18	+1.1
1,003,426	+		DDA3937_RS04540	0.18	+0.7
1,003,505	-		DDA3937_RS04540	0.23	+1.6
1,003,505	-		DDA3937_RS04540	0.23	+2.7
1,003,507	+		DDA3937_RS04540	0.23	+2.7
1,003,507	+		DDA3937_RS04540	0.23	-0.5
1,003,508	-		DDA3937_RS04540	0.23	+2.4
1,003,508	-		DDA3937_RS04540	0.23	+2.1
1,003,529	-		DDA3937_RS04540	0.25	+1.8
1,003,529	-		DDA3937_RS04540	0.25	+1.9
1,003,732	+		DDA3937_RS04540	0.37	+3.7
1,003,732	+		DDA3937_RS04540	0.37	+2.8
1,003,732	+		DDA3937_RS04540	0.37	+2.2
1,003,733	-		DDA3937_RS04540	0.37	+1.4
1,003,769	+		DDA3937_RS04540	0.39	+1.8
1,003,782	-		DDA3937_RS04540	0.40	+2.8
1,003,872	+		DDA3937_RS04540	0.46	+1.0
1,003,872	+		DDA3937_RS04540	0.46	+1.6
1,003,872	+		DDA3937_RS04540	0.46	+0.5
1,003,872	+		DDA3937_RS04540	0.46	+1.5
1,003,872	+		DDA3937_RS04540	0.46	+1.7
1,003,873	-		DDA3937_RS04540	0.46	-1.5
1,003,873	-		DDA3937_RS04540	0.46	-0.5
1,003,873	-		DDA3937_RS04540	0.46	+1.3
1,003,873	-		DDA3937_RS04540	0.46	+1.0
1,003,873	-		DDA3937_RS04540	0.46	+2.1
1,003,873	-		DDA3937_RS04540	0.46	-1.9
1,003,873	-		DDA3937_RS04540	0.46	+2.2
1,003,873	-		DDA3937_RS04540	0.46	+1.5
1,003,873	-		DDA3937_RS04540	0.46	+0.2
1,003,873	-		DDA3937_RS04540	0.46	+1.5
1,003,888	+		DDA3937_RS04540	0.47	+1.3
1,003,888	+		DDA3937_RS04540	0.47	+2.4
1,003,889	-		DDA3937_RS04540	0.47	+2.0
1,004,008	+		DDA3937_RS04540	0.54	-0.1
1,004,008	+		DDA3937_RS04540	0.54	+1.9
1,004,008	+		DDA3937_RS04540	0.54	-2.5
1,004,008	+		DDA3937_RS04540	0.54	+1.8
1,004,008	+		DDA3937_RS04540	0.54	+2.7
1,004,009	-		DDA3937_RS04540	0.54	+2.1
1,004,009	-		DDA3937_RS04540	0.54	+2.1
1,004,009	-		DDA3937_RS04540	0.54	+2.4
1,004,009	-		DDA3937_RS04540	0.54	+2.3
1,004,009	-		DDA3937_RS04540	0.54	+1.0
1,004,009	-		DDA3937_RS04540	0.54	-1.8
1,004,009	-		DDA3937_RS04540	0.54	+1.5
1,004,011	+		DDA3937_RS04540	0.54	+1.1
1,004,061	-		DDA3937_RS04540	0.57	+0.9
1,004,115	-		DDA3937_RS04540	0.60	+2.7
1,004,134	+		DDA3937_RS04540	0.62	+0.9
1,004,134	+		DDA3937_RS04540	0.62	+1.0
1,004,134	+		DDA3937_RS04540	0.62	-1.8
1,004,134	+		DDA3937_RS04540	0.62	+2.2
1,004,134	+		DDA3937_RS04540	0.62	+3.3
1,004,135	-		DDA3937_RS04540	0.62	+2.7
1,004,135	-		DDA3937_RS04540	0.62	+0.4
1,004,135	-		DDA3937_RS04540	0.62	-1.7
1,004,135	-		DDA3937_RS04540	0.62	+2.2
1,004,135	-		DDA3937_RS04540	0.62	+1.7
1,004,135	-		DDA3937_RS04540	0.62	+2.8
1,004,135	-		DDA3937_RS04540	0.62	-0.1
1,004,135	-		DDA3937_RS04540	0.62	+1.6
1,004,135	-		DDA3937_RS04540	0.62	-1.3
1,004,179	+		DDA3937_RS04540	0.64	-1.4
1,004,179	+		DDA3937_RS04540	0.64	+1.9
1,004,179	+		DDA3937_RS04540	0.64	+2.8
1,004,180	-		DDA3937_RS04540	0.64	+1.7
1,004,185	+		DDA3937_RS04540	0.65	+3.6
1,004,185	+		DDA3937_RS04540	0.65	+1.5
1,004,185	+		DDA3937_RS04540	0.65	+0.4
1,004,185	+		DDA3937_RS04540	0.65	+1.1
1,004,186	-		DDA3937_RS04540	0.65	+2.7
1,004,186	-		DDA3937_RS04540	0.65	+1.8
1,004,186	-		DDA3937_RS04540	0.65	+1.6
1,004,186	-		DDA3937_RS04540	0.65	+2.1
1,004,186	-		DDA3937_RS04540	0.65	+2.7
1,004,186	-		DDA3937_RS04540	0.65	+6.3
1,004,186	-		DDA3937_RS04540	0.65	+2.6
1,004,186	-		DDA3937_RS04540	0.65	+1.5
1,004,233	+		DDA3937_RS04540	0.68	+1.5
1,004,254	+		DDA3937_RS04540	0.69	+0.8
1,004,254	+		DDA3937_RS04540	0.69	+2.9
1,004,254	+		DDA3937_RS04540	0.69	+1.8
1,004,254	+		DDA3937_RS04540	0.69	+0.5
1,004,254	+		DDA3937_RS04540	0.69	+1.5
1,004,255	-		DDA3937_RS04540	0.69	+2.3
1,004,255	-		DDA3937_RS04540	0.69	+3.0
1,004,302	+		DDA3937_RS04540	0.72	-0.4
1,004,302	+		DDA3937_RS04540	0.72	+2.4
1,004,302	+		DDA3937_RS04540	0.72	-0.1
1,004,302	+		DDA3937_RS04540	0.72	+0.6
1,004,302	+		DDA3937_RS04540	0.72	+0.5
1,004,302	+		DDA3937_RS04540	0.72	+1.1
1,004,302	+		DDA3937_RS04540	0.72	+1.1
1,004,302	+		DDA3937_RS04540	0.72	+1.2
1,004,302	+		DDA3937_RS04540	0.72	+1.9
1,004,302	+		DDA3937_RS04540	0.72	+1.3
1,004,302	+		DDA3937_RS04540	0.72	-0.4
1,004,302	+		DDA3937_RS04540	0.72	+2.0
1,004,302	+		DDA3937_RS04540	0.72	-1.7
1,004,302	+		DDA3937_RS04540	0.72	+2.5
1,004,303	-		DDA3937_RS04540	0.72	+1.4
1,004,303	-		DDA3937_RS04540	0.72	+1.5
1,004,303	-		DDA3937_RS04540	0.72	+1.4
1,004,303	-		DDA3937_RS04540	0.72	+0.9
1,004,303	-		DDA3937_RS04540	0.72	+2.1
1,004,303	-		DDA3937_RS04540	0.72	-0.4
1,004,303	-		DDA3937_RS04540	0.72	+1.4
1,004,303	-		DDA3937_RS04540	0.72	+1.9
1,004,329	+		DDA3937_RS04540	0.73	+3.0
1,004,330	-		DDA3937_RS04540	0.73	+1.5
1,004,359	+		DDA3937_RS04540	0.75	+1.9
1,004,359	+		DDA3937_RS04540	0.75	+0.1
1,004,359	+		DDA3937_RS04540	0.75	+2.0
1,004,359	+		DDA3937_RS04540	0.75	+2.8
1,004,359	+		DDA3937_RS04540	0.75	+3.3
1,004,359	+		DDA3937_RS04540	0.75	+1.8
1,004,359	+		DDA3937_RS04540	0.75	+2.8
1,004,360	-		DDA3937_RS04540	0.75	+1.8
1,004,360	-		DDA3937_RS04540	0.75	+1.5
1,004,360	-		DDA3937_RS04540	0.75	+1.7
1,004,360	-		DDA3937_RS04540	0.75	+1.3
1,004,360	-		DDA3937_RS04540	0.75	+1.8
1,004,360	-		DDA3937_RS04540	0.75	+1.3
1,004,457	-		DDA3937_RS04540	0.81	+1.8
1,004,457	-		DDA3937_RS04540	0.81	-2.1
1,004,489	+		DDA3937_RS04540	0.83	+1.8
1,004,489	+		DDA3937_RS04540	0.83	+2.6
1,004,490	-		DDA3937_RS04540	0.83	+2.9
1,004,490	-		DDA3937_RS04540	0.83	+1.8
1,004,490	-		DDA3937_RS04540	0.83	+1.1
1,004,512	+		DDA3937_RS04540	0.85	+2.5
1,004,512	+		DDA3937_RS04540	0.85	+1.5
1,004,512	+		DDA3937_RS04540	0.85	-1.5
1,004,512	+		DDA3937_RS04540	0.85	+1.8
1,004,513	-		DDA3937_RS04540	0.85	+1.8
1,004,513	-		DDA3937_RS04540	0.85	+2.3
1,004,513	-		DDA3937_RS04540	0.85	+1.7
1,004,652	-				-0.3
1,004,746	+				+1.4
1,004,747	-				+3.0
1,004,747	-				+2.5
1,004,756	+				+0.5
1,004,756	+				+0.1
1,004,788	+				-0.7
1,004,789	-				+0.3
1,004,811	+				-0.1
1,004,811	+				-1.7
1,004,812	-				-1.7
1,004,823	-				+1.4
1,004,843	-				+1.0
1,004,899	-				-2.5
1,004,912	+				-0.8
1,004,912	+				+2.8
1,004,912	+				+1.4
1,004,913	-				-1.1
1,004,913	-				-0.4
1,004,963	+				-0.5
1,004,963	+				+1.9
1,004,963	+				+0.6
1,004,963	+				+0.1
1,004,963	+				-0.1
1,004,963	+				+1.0
1,004,963	+				-2.3
1,004,964	-				-2.2
1,004,964	-				-0.1
1,004,964	-				+0.5
1,004,964	-				+1.1
1,004,964	-				+0.3
1,004,964	-				-0.7
1,004,966	+				-0.5
1,004,966	+				-2.6
1,004,966	+				-0.5
1,004,966	+				+2.1
1,004,967	-				-2.0
1,004,967	-				-1.6
1,004,967	-				+1.1
1,004,967	-				-0.1
1,004,967	-				-0.5
1,004,967	-				-1.5
1,004,967	-				+0.0
1,004,967	-				+1.0
1,004,986	+				-3.4
1,005,013	+				-0.8
1,005,039	+				-2.4
1,005,039	+				-0.6
1,005,058	+				+0.8
1,005,059	-				+0.8
1,005,059	-				-1.6
1,005,059	-				+1.1
1,005,059	-				+0.4
1,005,100	+				+1.0
1,005,100	+				-0.8
1,005,100	+				+1.5
1,005,101	-				+1.4
1,005,101	-				-1.6
1,005,101	-				-1.8
1,005,101	-				-3.9
1,005,109	+				-1.6
1,005,118	+				-1.2
1,005,122	+				+2.2
1,005,123	-				+1.2
1,005,123	-				-2.4
1,005,142	+				-2.3
1,005,147	-				-3.1
1,005,161	+				+1.3
1,005,161	+				+2.3
1,005,335	+		DDA3937_RS04545	0.14	-1.4
1,005,336	-		DDA3937_RS04545	0.14	-1.7
1,005,336	-		DDA3937_RS04545	0.14	+3.1
1,005,426	+		DDA3937_RS04545	0.24	-2.1
1,005,480	+		DDA3937_RS04545	0.31	-1.3
1,005,480	+		DDA3937_RS04545	0.31	+0.4
1,005,480	+		DDA3937_RS04545	0.31	-1.9
1,005,480	+		DDA3937_RS04545	0.31	+0.8
1,005,480	+		DDA3937_RS04545	0.31	-3.3
1,005,481	-		DDA3937_RS04545	0.31	+1.5
1,005,481	-		DDA3937_RS04545	0.31	-0.8
1,005,481	-		DDA3937_RS04545	0.31	+0.4
1,005,481	-		DDA3937_RS04545	0.31	+1.2
1,005,481	-		DDA3937_RS04545	0.31	+1.1
1,005,481	-		DDA3937_RS04545	0.31	+1.0
1,005,481	-		DDA3937_RS04545	0.31	+2.1
1,005,568	-				-1.1
1,005,641	+		DDA3937_RS04545	0.49	-2.9
1,005,641	+		DDA3937_RS04545	0.49	-2.0
1,005,641	+		DDA3937_RS04545	0.49	+1.1
1,005,641	+		DDA3937_RS04545	0.49	-3.2
1,005,759	+		DDA3937_RS04545	0.63	-1.9
1,005,759	+		DDA3937_RS04545	0.63	-2.7
1,005,759	+		DDA3937_RS04545	0.63	-0.8
1,005,760	-		DDA3937_RS04545	0.63	-2.1
1,005,760	-		DDA3937_RS04545	0.63	-2.4