Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04535

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,000,614	+		DDA3937_RS04530	0.48	-3.2
1,000,615	-		DDA3937_RS04530	0.48	+2.2
1,000,641	+		DDA3937_RS04530	0.50	+1.3
1,000,641	+		DDA3937_RS04530	0.50	+2.7
1,000,641	+		DDA3937_RS04530	0.50	-0.1
1,000,642	-		DDA3937_RS04530	0.50	+0.4
1,000,642	-		DDA3937_RS04530	0.50	-2.2
1,000,662	+		DDA3937_RS04530	0.52	+0.3
1,000,662	+		DDA3937_RS04530	0.52	+1.1
1,000,662	+		DDA3937_RS04530	0.52	+0.1
1,000,662	+		DDA3937_RS04530	0.52	+0.3
1,000,663	-		DDA3937_RS04530	0.52	+0.6
1,000,663	-		DDA3937_RS04530	0.52	-0.9
1,000,672	+		DDA3937_RS04530	0.52	-0.8
1,000,672	+		DDA3937_RS04530	0.52	-0.8
1,000,673	-		DDA3937_RS04530	0.52	-0.1
1,000,739	-		DDA3937_RS04530	0.57	+1.2
1,000,806	+		DDA3937_RS04530	0.61	-1.3
1,000,807	-		DDA3937_RS04530	0.61	-0.3
1,000,872	+		DDA3937_RS04530	0.66	-2.6
1,000,873	-		DDA3937_RS04530	0.66	-0.6
1,000,873	-		DDA3937_RS04530	0.66	+1.9
1,000,873	-		DDA3937_RS04530	0.66	+1.9
1,000,921	+		DDA3937_RS04530	0.69	-2.2
1,000,922	-		DDA3937_RS04530	0.69	-4.2
1,000,922	-		DDA3937_RS04530	0.69	-1.7
1,000,923	+		DDA3937_RS04530	0.69	-2.2
1,000,923	+		DDA3937_RS04530	0.69	+1.3
1,000,923	+		DDA3937_RS04530	0.69	+0.8
1,000,923	+		DDA3937_RS04530	0.69	-1.3
1,000,923	+		DDA3937_RS04530	0.69	-0.9
1,000,923	+		DDA3937_RS04530	0.69	-2.3
1,000,923	+		DDA3937_RS04530	0.69	-4.0
1,000,923	+		DDA3937_RS04530	0.69	+2.4
1,000,923	+		DDA3937_RS04530	0.69	-1.4
1,000,923	+		DDA3937_RS04530	0.69	-1.3
1,000,923	+		DDA3937_RS04530	0.69	-1.1
1,000,923	+		DDA3937_RS04530	0.69	-0.3
1,000,923	+		DDA3937_RS04530	0.69	+0.9
1,000,924	-		DDA3937_RS04530	0.69	-3.2
1,000,924	-		DDA3937_RS04530	0.69	-1.1
1,000,924	-		DDA3937_RS04530	0.69	-0.0
1,000,924	-		DDA3937_RS04530	0.69	+0.7
1,000,924	-		DDA3937_RS04530	0.69	-1.2
1,000,924	-		DDA3937_RS04530	0.69	-0.3
1,000,924	-		DDA3937_RS04530	0.69	-0.4
1,000,924	-		DDA3937_RS04530	0.69	-1.8
1,000,924	-		DDA3937_RS04530	0.69	-1.7
1,000,924	-		DDA3937_RS04530	0.69	+1.8
1,000,924	-		DDA3937_RS04530	0.69	-1.5
1,000,924	-		DDA3937_RS04530	0.69	+0.8
1,000,924	-		DDA3937_RS04530	0.69	-0.9
1,000,973	+		DDA3937_RS04530	0.72	-0.2
1,000,973	+		DDA3937_RS04530	0.72	-2.5
1,000,973	+		DDA3937_RS04530	0.72	+1.6
1,000,973	+		DDA3937_RS04530	0.72	-1.5
1,000,974	-		DDA3937_RS04530	0.72	-1.7
1,001,074	+		DDA3937_RS04530	0.79	-1.2
1,001,085	+		DDA3937_RS04530	0.80	+1.2
1,001,086	-		DDA3937_RS04530	0.80	-0.8
1,001,086	-		DDA3937_RS04530	0.80	-0.9
1,001,086	-		DDA3937_RS04530	0.80	-2.0
1,001,166	+		DDA3937_RS04530	0.85	-1.4
1,001,167	-		DDA3937_RS04530	0.85	-2.7
1,001,167	-		DDA3937_RS04530	0.85	-0.5
1,001,167	-		DDA3937_RS04530	0.85	+2.7
1,001,167	-		DDA3937_RS04530	0.85	-0.2
1,001,274	+				-2.1
1,001,274	+				-0.1
1,001,281	+				+0.3
1,001,283	+				-1.1
1,001,283	+				+0.0
1,001,284	-				-0.8
1,001,284	-				-2.7
1,001,284	-				-0.8
1,001,308	-				-2.7
1,001,380	+				-1.5
1,001,380	+				-3.3
1,001,389	+				-1.2
1,001,389	+				-0.5
1,001,390	-				-1.9
1,001,390	-				-0.5
1,001,392	+				-2.1
1,001,392	+				-1.7
1,001,393	-				-4.1
1,001,406	+				-2.7
1,001,407	-				+1.5
1,001,407	-				+0.5
1,001,409	+				-2.4
1,001,410	-				-0.2
1,001,502	+				+3.0
1,001,503	-				-3.0
1,001,503	-				+1.0
1,001,510	+				-2.9
1,001,510	+				-1.3
1,001,562	+				-1.7
1,001,562	+				-1.5
1,001,562	+				+1.6
1,001,562	+				-1.8
1,001,563	-				-1.5
1,001,563	-				+1.6
1,001,563	-				-2.3
1,001,563	-				+0.3
1,001,638	+				-1.7
1,001,639	-				-0.5
1,001,639	-				-1.1
1,001,685	-				-3.2
1,001,840	+		DDA3937_RS04535	0.19	-0.2
1,001,840	+		DDA3937_RS04535	0.19	-2.9
1,001,841	-		DDA3937_RS04535	0.19	-2.1
1,001,841	-		DDA3937_RS04535	0.19	-3.6
1,001,841	-		DDA3937_RS04535	0.19	-0.2
1,001,914	+		DDA3937_RS04535	0.24	-1.8
1,001,915	-		DDA3937_RS04535	0.24	-0.7
1,002,121	-		DDA3937_RS04535	0.37	-1.3
1,002,131	-		DDA3937_RS04535	0.38	-1.5
1,002,131	-		DDA3937_RS04535	0.38	-2.1
1,002,178	+		DDA3937_RS04535	0.41	-1.9
1,002,178	+		DDA3937_RS04535	0.41	+0.6
1,002,273	-		DDA3937_RS04535	0.47	+0.6
1,002,273	-		DDA3937_RS04535	0.47	-2.8
1,002,394	+		DDA3937_RS04535	0.55	+1.4
1,002,465	-		DDA3937_RS04535	0.60	+0.4
1,002,483	+		DDA3937_RS04535	0.61	+0.0
1,002,543	+		DDA3937_RS04535	0.65	-1.5
1,002,676	+		DDA3937_RS04535	0.74	-0.9
1,002,677	-		DDA3937_RS04535	0.74	-0.6
1,002,837	+		DDA3937_RS04535	0.84	-2.5
1,002,838	-		DDA3937_RS04535	0.84	+0.3
1,002,838	-		DDA3937_RS04535	0.84	-1.9
1,002,950	+				+1.4
1,002,951	-				-0.3
1,002,951	-				-2.8
1,002,967	+				-0.2
1,003,037	-				-0.5
1,003,229	+				+0.9
1,003,229	+				+2.5
1,003,230	-				+2.5
1,003,325	-		DDA3937_RS04540	0.12	+2.6
1,003,340	+		DDA3937_RS04540	0.13	+1.3
1,003,341	-		DDA3937_RS04540	0.13	+2.4
1,003,367	+		DDA3937_RS04540	0.15	+2.9
1,003,368	-		DDA3937_RS04540	0.15	-1.8
1,003,426	+		DDA3937_RS04540	0.18	+2.4
1,003,426	+		DDA3937_RS04540	0.18	+1.1
1,003,426	+		DDA3937_RS04540	0.18	+0.7
1,003,505	-		DDA3937_RS04540	0.23	+1.6
1,003,505	-		DDA3937_RS04540	0.23	+2.7
1,003,507	+		DDA3937_RS04540	0.23	+2.7
1,003,507	+		DDA3937_RS04540	0.23	-0.5
1,003,508	-		DDA3937_RS04540	0.23	+2.4
1,003,508	-		DDA3937_RS04540	0.23	+2.1
1,003,529	-		DDA3937_RS04540	0.25	+1.8
1,003,529	-		DDA3937_RS04540	0.25	+1.9
1,003,732	+		DDA3937_RS04540	0.37	+3.7
1,003,732	+		DDA3937_RS04540	0.37	+2.8
1,003,732	+		DDA3937_RS04540	0.37	+2.2
1,003,733	-		DDA3937_RS04540	0.37	+1.4
1,003,769	+		DDA3937_RS04540	0.39	+1.8
1,003,782	-		DDA3937_RS04540	0.40	+2.8
1,003,872	+		DDA3937_RS04540	0.46	+1.0
1,003,872	+		DDA3937_RS04540	0.46	+1.6
1,003,872	+		DDA3937_RS04540	0.46	+0.5
1,003,872	+		DDA3937_RS04540	0.46	+1.5
1,003,872	+		DDA3937_RS04540	0.46	+1.7
1,003,873	-		DDA3937_RS04540	0.46	-1.5
1,003,873	-		DDA3937_RS04540	0.46	-0.5
1,003,873	-		DDA3937_RS04540	0.46	+1.3
1,003,873	-		DDA3937_RS04540	0.46	+1.0
1,003,873	-		DDA3937_RS04540	0.46	+2.1
1,003,873	-		DDA3937_RS04540	0.46	-1.9
1,003,873	-		DDA3937_RS04540	0.46	+2.2
1,003,873	-		DDA3937_RS04540	0.46	+1.5
1,003,873	-		DDA3937_RS04540	0.46	+0.2
1,003,873	-		DDA3937_RS04540	0.46	+1.5
1,003,888	+		DDA3937_RS04540	0.47	+1.3
1,003,888	+		DDA3937_RS04540	0.47	+2.4
1,003,889	-		DDA3937_RS04540	0.47	+2.0
1,004,008	+		DDA3937_RS04540	0.54	-0.1
1,004,008	+		DDA3937_RS04540	0.54	+1.9
1,004,008	+		DDA3937_RS04540	0.54	-2.5
1,004,008	+		DDA3937_RS04540	0.54	+1.8
1,004,008	+		DDA3937_RS04540	0.54	+2.7
1,004,009	-		DDA3937_RS04540	0.54	+2.1
1,004,009	-		DDA3937_RS04540	0.54	+2.1
1,004,009	-		DDA3937_RS04540	0.54	+2.4
1,004,009	-		DDA3937_RS04540	0.54	+2.3
1,004,009	-		DDA3937_RS04540	0.54	+1.0
1,004,009	-		DDA3937_RS04540	0.54	-1.8
1,004,009	-		DDA3937_RS04540	0.54	+1.5
1,004,011	+		DDA3937_RS04540	0.54	+1.1
1,004,061	-		DDA3937_RS04540	0.57	+0.9