Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04415 and DDA3937_RS04420 are separated by 226 nucleotides DDA3937_RS04420 and DDA3937_RS04425 are separated by 83 nucleotides
DDA3937_RS04415: DDA3937_RS04415 - cytosine permease, at 974,417 to 975,712
_RS04415
DDA3937_RS04420: DDA3937_RS04420 - Dyp-type peroxidase, at 975,939 to 976,838
_RS04420
DDA3937_RS04425: DDA3937_RS04425 - cysteine synthase CysM, at 976,922 to 977,803
_RS04425
Position (kb) 975
976
977 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.982 kb on + strand, within DDA3937_RS04415 at 974.983 kb on - strand, within DDA3937_RS04415 at 974.995 kb on + strand, within DDA3937_RS04415 at 974.996 kb on - strand, within DDA3937_RS04415 at 975.037 kb on + strand, within DDA3937_RS04415 at 975.038 kb on - strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.112 kb on - strand, within DDA3937_RS04415 at 975.112 kb on - strand, within DDA3937_RS04415 at 975.112 kb on - strand, within DDA3937_RS04415 at 975.275 kb on + strand, within DDA3937_RS04415 at 975.313 kb on + strand, within DDA3937_RS04415 at 975.313 kb on + strand, within DDA3937_RS04415 at 975.313 kb on + strand, within DDA3937_RS04415 at 975.313 kb on + strand, within DDA3937_RS04415 at 975.314 kb on - strand, within DDA3937_RS04415 at 975.335 kb on + strand, within DDA3937_RS04415 at 975.335 kb on + strand, within DDA3937_RS04415 at 975.336 kb on - strand, within DDA3937_RS04415 at 975.336 kb on - strand, within DDA3937_RS04415 at 975.470 kb on + strand, within DDA3937_RS04415 at 975.470 kb on + strand, within DDA3937_RS04415 at 975.470 kb on + strand, within DDA3937_RS04415 at 975.471 kb on - strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.475 kb on + strand, within DDA3937_RS04415 at 975.475 kb on + strand, within DDA3937_RS04415 at 975.475 kb on + strand, within DDA3937_RS04415 at 975.475 kb on + strand, within DDA3937_RS04415 at 975.476 kb on - strand, within DDA3937_RS04415 at 975.476 kb on - strand, within DDA3937_RS04415 at 975.476 kb on - strand, within DDA3937_RS04415 at 975.476 kb on - strand, within DDA3937_RS04415 at 975.659 kb on + strand at 975.711 kb on - strand at 975.854 kb on - strand at 975.859 kb on + strand at 975.860 kb on - strand at 975.860 kb on - strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.875 kb on + strand at 975.875 kb on + strand at 975.876 kb on - strand at 975.921 kb on - strand at 975.959 kb on + strand at 976.001 kb on + strand at 976.002 kb on - strand at 976.002 kb on - strand at 976.006 kb on + strand at 976.007 kb on - strand at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.041 kb on - strand, within DDA3937_RS04420 at 976.041 kb on - strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.678 kb on - strand, within DDA3937_RS04420 at 976.690 kb on - strand, within DDA3937_RS04420 at 976.690 kb on - strand, within DDA3937_RS04420 at 976.705 kb on - strand, within DDA3937_RS04420 at 976.763 kb on + strand at 976.764 kb on - strand at 976.797 kb on + strand at 976.797 kb on + strand at 976.797 kb on + strand at 976.798 kb on - strand at 976.825 kb on + strand at 976.825 kb on + strand at 976.826 kb on - strand at 976.826 kb on - strand at 976.834 kb on + strand at 976.856 kb on - strand at 976.938 kb on + strand at 976.952 kb on - strand at 976.968 kb on + strand at 976.969 kb on - strand at 977.096 kb on - strand, within DDA3937_RS04425 at 977.268 kb on - strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.777 kb on + strand at 977.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 974,953 + DDA3937_RS04415 0.41 +2.2 974,953 + DDA3937_RS04415 0.41 +1.0 974,953 + DDA3937_RS04415 0.41 -0.5 974,953 + DDA3937_RS04415 0.41 -0.7 974,953 + DDA3937_RS04415 0.41 +0.5 974,982 + DDA3937_RS04415 0.44 -0.6 974,983 - DDA3937_RS04415 0.44 -0.8 974,995 + DDA3937_RS04415 0.45 -2.9 974,996 - DDA3937_RS04415 0.45 -3.3 975,037 + DDA3937_RS04415 0.48 +1.6 975,038 - DDA3937_RS04415 0.48 -1.7 975,111 + DDA3937_RS04415 0.54 +1.4 975,111 + DDA3937_RS04415 0.54 -1.6 975,111 + DDA3937_RS04415 0.54 -0.3 975,111 + DDA3937_RS04415 0.54 -1.8 975,111 + DDA3937_RS04415 0.54 -2.7 975,112 - DDA3937_RS04415 0.54 -1.9 975,112 - DDA3937_RS04415 0.54 -0.5 975,112 - DDA3937_RS04415 0.54 -1.5 975,275 + DDA3937_RS04415 0.66 +1.5 975,313 + DDA3937_RS04415 0.69 -0.5 975,313 + DDA3937_RS04415 0.69 +0.4 975,313 + DDA3937_RS04415 0.69 -2.1 975,313 + DDA3937_RS04415 0.69 +2.3 975,314 - DDA3937_RS04415 0.69 -0.5 975,335 + DDA3937_RS04415 0.71 +1.3 975,335 + DDA3937_RS04415 0.71 +0.3 975,336 - DDA3937_RS04415 0.71 +0.3 975,336 - DDA3937_RS04415 0.71 +1.1 975,470 + DDA3937_RS04415 0.81 -0.2 975,470 + DDA3937_RS04415 0.81 +1.3 975,470 + DDA3937_RS04415 0.81 -1.8 975,471 - DDA3937_RS04415 0.81 -0.8 975,473 + DDA3937_RS04415 0.81 +1.0 975,473 + DDA3937_RS04415 0.81 -0.8 975,473 + DDA3937_RS04415 0.81 -0.8 975,473 + DDA3937_RS04415 0.81 -1.6 975,473 + DDA3937_RS04415 0.81 +1.0 975,473 + DDA3937_RS04415 0.81 +1.1 975,473 + DDA3937_RS04415 0.81 +0.7 975,473 + DDA3937_RS04415 0.81 +1.5 975,474 - DDA3937_RS04415 0.82 -1.5 975,474 - DDA3937_RS04415 0.82 +1.4 975,474 - DDA3937_RS04415 0.82 -1.3 975,474 - DDA3937_RS04415 0.82 -1.8 975,474 - DDA3937_RS04415 0.82 -0.1 975,474 - DDA3937_RS04415 0.82 +1.7 975,474 - DDA3937_RS04415 0.82 -0.5 975,475 + DDA3937_RS04415 0.82 -0.5 975,475 + DDA3937_RS04415 0.82 +0.4 975,475 + DDA3937_RS04415 0.82 -1.4 975,475 + DDA3937_RS04415 0.82 +0.2 975,476 - DDA3937_RS04415 0.82 +1.4 975,476 - DDA3937_RS04415 0.82 -0.4 975,476 - DDA3937_RS04415 0.82 -1.9 975,476 - DDA3937_RS04415 0.82 -2.8 975,659 + +0.6 975,711 - -1.1 975,854 - -3.7 975,859 + +0.9 975,860 - -0.4 975,860 - -1.6 975,861 + +1.9 975,861 + -1.7 975,861 + -2.3 975,861 + -2.5 975,861 + -0.5 975,861 + -2.5 975,861 + +3.3 975,861 + -2.8 975,861 + +1.7 975,861 + +1.0 975,862 - -2.4 975,862 - -0.3 975,862 - -1.7 975,862 - -3.1 975,862 - -2.4 975,862 - -2.3 975,862 - +0.5 975,862 - -2.8 975,875 + -0.8 975,875 + -1.7 975,876 - -5.1 975,921 - -3.0 975,959 + -1.5 976,001 + +1.1 976,002 - -0.8 976,002 - -2.2 976,006 + -3.4 976,007 - -1.7 976,040 + DDA3937_RS04420 0.11 -1.7 976,040 + DDA3937_RS04420 0.11 -3.2 976,040 + DDA3937_RS04420 0.11 -2.9 976,040 + DDA3937_RS04420 0.11 -1.5 976,040 + DDA3937_RS04420 0.11 -3.0 976,041 - DDA3937_RS04420 0.11 -2.1 976,041 - DDA3937_RS04420 0.11 -2.6 976,446 + DDA3937_RS04420 0.56 -1.6 976,446 + DDA3937_RS04420 0.56 -0.1 976,446 + DDA3937_RS04420 0.56 -1.4 976,446 + DDA3937_RS04420 0.56 -1.9 976,446 + DDA3937_RS04420 0.56 -1.5 976,446 + DDA3937_RS04420 0.56 -1.8 976,446 + DDA3937_RS04420 0.56 -1.5 976,678 - DDA3937_RS04420 0.82 -0.2 976,690 - DDA3937_RS04420 0.83 -2.1 976,690 - DDA3937_RS04420 0.83 -3.7 976,705 - DDA3937_RS04420 0.85 -0.5 976,763 + -3.1 976,764 - -1.9 976,797 + -0.4 976,797 + -2.6 976,797 + -0.8 976,798 - -0.1 976,825 + -3.5 976,825 + -0.1 976,826 - -1.8 976,826 - +1.5 976,834 + -2.4 976,856 - -0.9 976,938 + -1.7 976,952 - -0.1 976,968 + -0.8 976,969 - -0.8 977,096 - DDA3937_RS04425 0.20 -0.8 977,268 - DDA3937_RS04425 0.39 -0.1 977,503 + DDA3937_RS04425 0.66 -1.5 977,503 + DDA3937_RS04425 0.66 -1.8 977,567 + DDA3937_RS04425 0.73 -2.8 977,567 + DDA3937_RS04425 0.73 +3.1 977,567 + DDA3937_RS04425 0.73 -1.1 977,567 + DDA3937_RS04425 0.73 +1.7 977,567 + DDA3937_RS04425 0.73 -1.7 977,567 + DDA3937_RS04425 0.73 +0.5 977,567 + DDA3937_RS04425 0.73 +0.1 977,567 + DDA3937_RS04425 0.73 -2.9 977,568 - DDA3937_RS04425 0.73 +2.7 977,568 - DDA3937_RS04425 0.73 -0.7 977,568 - DDA3937_RS04425 0.73 +1.1 977,568 - DDA3937_RS04425 0.73 +1.0 977,568 - DDA3937_RS04425 0.73 -0.1 977,568 - DDA3937_RS04425 0.73 +0.0 977,569 + DDA3937_RS04425 0.73 +1.7 977,569 + DDA3937_RS04425 0.73 -1.1 977,569 + DDA3937_RS04425 0.73 -1.9 977,570 - DDA3937_RS04425 0.73 -0.8 977,570 - DDA3937_RS04425 0.73 -2.5 977,570 - DDA3937_RS04425 0.73 -2.3 977,608 + DDA3937_RS04425 0.78 +2.9 977,608 + DDA3937_RS04425 0.78 -1.7 977,608 + DDA3937_RS04425 0.78 +2.0 977,608 + DDA3937_RS04425 0.78 -1.1 977,608 + DDA3937_RS04425 0.78 -0.5 977,614 + DDA3937_RS04425 0.78 -2.7 977,614 + DDA3937_RS04425 0.78 -0.2 977,615 - DDA3937_RS04425 0.79 -1.4 977,615 - DDA3937_RS04425 0.79 -2.7 977,777 + -1.9 977,777 + -0.1
Or see this region's nucleotide sequence