Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04235 and DDA3937_RS04240 overlap by 14 nucleotides DDA3937_RS04240 and DDA3937_RS04245 overlap by 1 nucleotides DDA3937_RS04245 and DDA3937_RS04250 are separated by 132 nucleotides DDA3937_RS04250 and DDA3937_RS04255 are separated by 187 nucleotides
DDA3937_RS04235: DDA3937_RS04235 - phage holin family protein, at 935,473 to 935,778
_RS04235
DDA3937_RS04240: DDA3937_RS04240 - M15 family metallopeptidase, at 935,765 to 936,106
_RS04240
DDA3937_RS04245: DDA3937_RS04245 - hypothetical protein, at 936,106 to 936,462
_RS04245
DDA3937_RS04250: DDA3937_RS04250 - putative phage tail assembly chaperone, at 936,595 to 936,852
_RS04250
DDA3937_RS04255: DDA3937_RS04255 - phage tail tape measure protein, at 937,040 to 939,004
_RS04255
Position (kb) 936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 935.733 kb on + strand, within DDA3937_RS04235 at 935.734 kb on - strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.772 kb on + strand at 935.772 kb on + strand at 935.773 kb on - strand at 935.773 kb on - strand at 935.790 kb on + strand at 935.790 kb on + strand at 935.791 kb on - strand at 935.791 kb on - strand at 935.864 kb on + strand, within DDA3937_RS04240 at 935.865 kb on - strand, within DDA3937_RS04240 at 935.929 kb on + strand, within DDA3937_RS04240 at 935.975 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.997 kb on - strand, within DDA3937_RS04240 at 936.249 kb on - strand, within DDA3937_RS04245 at 936.249 kb on - strand, within DDA3937_RS04245 at 936.302 kb on + strand, within DDA3937_RS04245 at 936.303 kb on - strand, within DDA3937_RS04245 at 936.355 kb on - strand, within DDA3937_RS04245 at 936.355 kb on - strand, within DDA3937_RS04245 at 936.358 kb on - strand, within DDA3937_RS04245 at 936.392 kb on - strand, within DDA3937_RS04245 at 936.392 kb on - strand, within DDA3937_RS04245 at 936.425 kb on + strand, within DDA3937_RS04245 at 936.461 kb on - strand at 936.482 kb on - strand at 936.553 kb on + strand at 936.554 kb on - strand at 936.554 kb on - strand at 936.562 kb on - strand at 936.562 kb on - strand at 936.574 kb on - strand at 936.574 kb on - strand at 936.574 kb on - strand at 936.606 kb on + strand at 936.607 kb on - strand at 936.607 kb on - strand at 936.658 kb on + strand, within DDA3937_RS04250 at 936.659 kb on - strand, within DDA3937_RS04250 at 936.673 kb on - strand, within DDA3937_RS04250 at 936.693 kb on + strand, within DDA3937_RS04250 at 936.694 kb on - strand, within DDA3937_RS04250 at 936.694 kb on - strand, within DDA3937_RS04250 at 936.694 kb on - strand, within DDA3937_RS04250 at 936.715 kb on + strand, within DDA3937_RS04250 at 936.715 kb on + strand, within DDA3937_RS04250 at 936.716 kb on - strand, within DDA3937_RS04250 at 936.716 kb on - strand, within DDA3937_RS04250 at 936.716 kb on - strand, within DDA3937_RS04250 at 936.716 kb on - strand, within DDA3937_RS04250 at 936.818 kb on - strand, within DDA3937_RS04250 at 936.818 kb on - strand, within DDA3937_RS04250 at 936.879 kb on - strand at 936.915 kb on + strand at 936.974 kb on + strand at 936.974 kb on + strand at 936.975 kb on - strand at 936.975 kb on - strand at 936.989 kb on + strand at 936.996 kb on - strand at 936.996 kb on - strand at 936.996 kb on - strand at 937.027 kb on + strand at 937.062 kb on + strand at 937.062 kb on + strand at 937.075 kb on + strand at 937.076 kb on - strand at 937.178 kb on - strand at 937.178 kb on - strand at 937.189 kb on + strand at 937.190 kb on - strand at 937.195 kb on + strand at 937.195 kb on + strand at 937.196 kb on - strand at 937.196 kb on - strand at 937.196 kb on - strand at 937.222 kb on - strand at 937.288 kb on + strand, within DDA3937_RS04255 at 937.340 kb on + strand, within DDA3937_RS04255 at 937.340 kb on + strand, within DDA3937_RS04255 at 937.340 kb on + strand, within DDA3937_RS04255 at 937.340 kb on + strand, within DDA3937_RS04255 at 937.341 kb on - strand, within DDA3937_RS04255 at 937.341 kb on - strand, within DDA3937_RS04255 at 937.341 kb on - strand, within DDA3937_RS04255 at 937.520 kb on - strand, within DDA3937_RS04255 at 937.559 kb on + strand, within DDA3937_RS04255 at 937.559 kb on + strand, within DDA3937_RS04255 at 937.559 kb on + strand, within DDA3937_RS04255 at 937.559 kb on + strand, within DDA3937_RS04255 at 937.560 kb on - strand, within DDA3937_RS04255 at 937.560 kb on - strand, within DDA3937_RS04255 at 937.560 kb on - strand, within DDA3937_RS04255 at 937.561 kb on + strand, within DDA3937_RS04255 at 937.561 kb on + strand, within DDA3937_RS04255 at 937.561 kb on + strand, within DDA3937_RS04255 at 937.561 kb on + strand, within DDA3937_RS04255 at 937.561 kb on + strand, within DDA3937_RS04255 at 937.562 kb on - strand, within DDA3937_RS04255 at 937.562 kb on - strand, within DDA3937_RS04255 at 937.562 kb on - strand, within DDA3937_RS04255 at 937.567 kb on + strand at 937.596 kb on + strand, within DDA3937_RS04255 at 937.637 kb on + strand, within DDA3937_RS04255 at 937.637 kb on + strand, within DDA3937_RS04255 at 937.638 kb on - strand, within DDA3937_RS04255 at 937.638 kb on - strand, within DDA3937_RS04255 at 937.638 kb on - strand, within DDA3937_RS04255 at 937.638 kb on - strand, within DDA3937_RS04255 at 937.648 kb on + strand, within DDA3937_RS04255 at 937.649 kb on - strand, within DDA3937_RS04255 at 937.649 kb on - strand, within DDA3937_RS04255 at 937.680 kb on + strand, within DDA3937_RS04255 at 937.680 kb on + strand, within DDA3937_RS04255 at 937.680 kb on + strand, within DDA3937_RS04255 at 937.680 kb on + strand, within DDA3937_RS04255 at 937.680 kb on + strand, within DDA3937_RS04255 at 937.680 kb on + strand, within DDA3937_RS04255 at 937.681 kb on - strand, within DDA3937_RS04255 at 937.681 kb on - strand, within DDA3937_RS04255 at 937.681 kb on - strand, within DDA3937_RS04255 at 937.687 kb on + strand, within DDA3937_RS04255 at 937.687 kb on + strand, within DDA3937_RS04255 at 937.687 kb on + strand, within DDA3937_RS04255 at 937.687 kb on + strand, within DDA3937_RS04255 at 937.687 kb on + strand, within DDA3937_RS04255 at 937.687 kb on + strand, within DDA3937_RS04255 at 937.687 kb on + strand, within DDA3937_RS04255 at 937.687 kb on + strand, within DDA3937_RS04255 at 937.688 kb on - strand, within DDA3937_RS04255 at 937.688 kb on - strand, within DDA3937_RS04255 at 937.688 kb on - strand, within DDA3937_RS04255 at 937.688 kb on - strand, within DDA3937_RS04255 at 937.688 kb on - strand, within DDA3937_RS04255 at 937.688 kb on - strand, within DDA3937_RS04255 at 937.692 kb on + strand, within DDA3937_RS04255 at 937.692 kb on + strand, within DDA3937_RS04255 at 937.692 kb on + strand, within DDA3937_RS04255 at 937.693 kb on - strand, within DDA3937_RS04255 at 937.693 kb on - strand, within DDA3937_RS04255 at 937.693 kb on - strand, within DDA3937_RS04255 at 937.715 kb on + strand, within DDA3937_RS04255 at 937.716 kb on - strand, within DDA3937_RS04255 at 937.716 kb on - strand, within DDA3937_RS04255 at 937.791 kb on + strand, within DDA3937_RS04255 at 937.833 kb on - strand, within DDA3937_RS04255
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 935,733 + DDA3937_RS04235 0.85 +2.5 935,734 - DDA3937_RS04235 0.85 -0.6 935,736 + DDA3937_RS04235 0.86 +2.4 935,736 + DDA3937_RS04235 0.86 +5.3 935,736 + DDA3937_RS04235 0.86 +2.0 935,736 + DDA3937_RS04235 0.86 +2.3 935,736 + DDA3937_RS04235 0.86 +3.6 935,737 - DDA3937_RS04235 0.86 -1.3 935,737 - DDA3937_RS04235 0.86 +0.8 935,737 - DDA3937_RS04235 0.86 +1.9 935,737 - DDA3937_RS04235 0.86 -1.3 935,772 + +1.8 935,772 + +3.8 935,773 - -0.4 935,773 - +0.3 935,790 + -1.6 935,790 + +0.9 935,791 - +0.9 935,791 - -1.3 935,864 + DDA3937_RS04240 0.29 -2.7 935,865 - DDA3937_RS04240 0.29 -1.4 935,929 + DDA3937_RS04240 0.48 +0.3 935,975 + DDA3937_RS04240 0.61 -1.0 935,996 + DDA3937_RS04240 0.68 -0.8 935,996 + DDA3937_RS04240 0.68 +2.0 935,996 + DDA3937_RS04240 0.68 +0.6 935,997 - DDA3937_RS04240 0.68 +0.7 936,249 - DDA3937_RS04245 0.40 -0.1 936,249 - DDA3937_RS04245 0.40 -3.6 936,302 + DDA3937_RS04245 0.55 -2.0 936,303 - DDA3937_RS04245 0.55 -1.4 936,355 - DDA3937_RS04245 0.70 -0.3 936,355 - DDA3937_RS04245 0.70 -2.3 936,358 - DDA3937_RS04245 0.71 -1.2 936,392 - DDA3937_RS04245 0.80 -2.6 936,392 - DDA3937_RS04245 0.80 +0.5 936,425 + DDA3937_RS04245 0.89 +2.7 936,461 - -3.4 936,482 - -1.8 936,553 + -2.5 936,554 - -0.0 936,554 - +1.0 936,562 - +0.1 936,562 - -1.3 936,574 - +0.4 936,574 - +3.1 936,574 - +2.5 936,606 + -1.1 936,607 - -2.0 936,607 - -1.8 936,658 + DDA3937_RS04250 0.24 +1.5 936,659 - DDA3937_RS04250 0.25 +0.1 936,673 - DDA3937_RS04250 0.30 +1.6 936,693 + DDA3937_RS04250 0.38 -2.3 936,694 - DDA3937_RS04250 0.38 +0.1 936,694 - DDA3937_RS04250 0.38 -1.6 936,694 - DDA3937_RS04250 0.38 -1.4 936,715 + DDA3937_RS04250 0.47 +3.5 936,715 + DDA3937_RS04250 0.47 +0.9 936,716 - DDA3937_RS04250 0.47 -3.4 936,716 - DDA3937_RS04250 0.47 -1.6 936,716 - DDA3937_RS04250 0.47 -3.3 936,716 - DDA3937_RS04250 0.47 +1.2 936,818 - DDA3937_RS04250 0.86 +1.1 936,818 - DDA3937_RS04250 0.86 +2.1 936,879 - -2.8 936,915 + +1.0 936,974 + -2.0 936,974 + +0.8 936,975 - -1.0 936,975 - -2.5 936,989 + +0.3 936,996 - -1.0 936,996 - -1.9 936,996 - -2.5 937,027 + +1.2 937,062 + +3.6 937,062 + -1.8 937,075 + -2.3 937,076 - -1.1 937,178 - +1.9 937,178 - -1.4 937,189 + -2.8 937,190 - -1.8 937,195 + +1.8 937,195 + +0.2 937,196 - -1.4 937,196 - -1.6 937,196 - -1.4 937,222 - +0.1 937,288 + DDA3937_RS04255 0.13 +1.2 937,340 + DDA3937_RS04255 0.15 +1.9 937,340 + DDA3937_RS04255 0.15 -1.9 937,340 + DDA3937_RS04255 0.15 +3.2 937,340 + DDA3937_RS04255 0.15 -0.1 937,341 - DDA3937_RS04255 0.15 -1.3 937,341 - DDA3937_RS04255 0.15 -2.9 937,341 - DDA3937_RS04255 0.15 -0.9 937,520 - DDA3937_RS04255 0.24 +0.4 937,559 + DDA3937_RS04255 0.26 -0.6 937,559 + DDA3937_RS04255 0.26 +0.8 937,559 + DDA3937_RS04255 0.26 +1.2 937,559 + DDA3937_RS04255 0.26 +0.5 937,560 - DDA3937_RS04255 0.26 -0.0 937,560 - DDA3937_RS04255 0.26 -2.9 937,560 - DDA3937_RS04255 0.26 -0.7 937,561 + DDA3937_RS04255 0.27 +3.0 937,561 + DDA3937_RS04255 0.27 +1.3 937,561 + DDA3937_RS04255 0.27 -1.0 937,561 + DDA3937_RS04255 0.27 +1.6 937,561 + DDA3937_RS04255 0.27 -2.3 937,562 - DDA3937_RS04255 0.27 +0.4 937,562 - DDA3937_RS04255 0.27 -0.8 937,562 - DDA3937_RS04255 0.27 +1.3 937,567 + +1.6 937,596 + DDA3937_RS04255 0.28 -1.8 937,637 + DDA3937_RS04255 0.30 -1.6 937,637 + DDA3937_RS04255 0.30 -1.9 937,638 - DDA3937_RS04255 0.30 -1.3 937,638 - DDA3937_RS04255 0.30 -0.0 937,638 - DDA3937_RS04255 0.30 -1.1 937,638 - DDA3937_RS04255 0.30 -1.8 937,648 + DDA3937_RS04255 0.31 +2.0 937,649 - DDA3937_RS04255 0.31 -0.3 937,649 - DDA3937_RS04255 0.31 -2.1 937,680 + DDA3937_RS04255 0.33 -0.8 937,680 + DDA3937_RS04255 0.33 -0.0 937,680 + DDA3937_RS04255 0.33 -1.5 937,680 + DDA3937_RS04255 0.33 -0.8 937,680 + DDA3937_RS04255 0.33 +3.0 937,680 + DDA3937_RS04255 0.33 -0.4 937,681 - DDA3937_RS04255 0.33 -1.9 937,681 - DDA3937_RS04255 0.33 -2.1 937,681 - DDA3937_RS04255 0.33 +2.4 937,687 + DDA3937_RS04255 0.33 +2.0 937,687 + DDA3937_RS04255 0.33 -2.4 937,687 + DDA3937_RS04255 0.33 -0.6 937,687 + DDA3937_RS04255 0.33 -3.3 937,687 + DDA3937_RS04255 0.33 -3.0 937,687 + DDA3937_RS04255 0.33 +3.5 937,687 + DDA3937_RS04255 0.33 -0.0 937,687 + DDA3937_RS04255 0.33 +2.4 937,688 - DDA3937_RS04255 0.33 +0.8 937,688 - DDA3937_RS04255 0.33 -3.5 937,688 - DDA3937_RS04255 0.33 -0.9 937,688 - DDA3937_RS04255 0.33 -2.8 937,688 - DDA3937_RS04255 0.33 +2.2 937,688 - DDA3937_RS04255 0.33 -0.4 937,692 + DDA3937_RS04255 0.33 +3.7 937,692 + DDA3937_RS04255 0.33 +0.2 937,692 + DDA3937_RS04255 0.33 +1.3 937,693 - DDA3937_RS04255 0.33 -3.1 937,693 - DDA3937_RS04255 0.33 -2.1 937,693 - DDA3937_RS04255 0.33 -1.8 937,715 + DDA3937_RS04255 0.34 +0.1 937,716 - DDA3937_RS04255 0.34 -2.3 937,716 - DDA3937_RS04255 0.34 -1.0 937,791 + DDA3937_RS04255 0.38 +2.1 937,833 - DDA3937_RS04255 0.40 -2.3
Or see this region's nucleotide sequence