Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04230

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04225 and DDA3937_RS04230 overlap by 4 nucleotidesDDA3937_RS04230 and DDA3937_RS04235 are separated by 8 nucleotidesDDA3937_RS04235 and DDA3937_RS04240 overlap by 14 nucleotidesDDA3937_RS04240 and DDA3937_RS04245 overlap by 1 nucleotides DDA3937_RS04225: DDA3937_RS04225 - DUF2586 domain-containing protein, at 933,897 to 935,012 _RS04225 DDA3937_RS04230: DDA3937_RS04230 - DUF2597 family protein, at 935,009 to 935,464 _RS04230 DDA3937_RS04235: DDA3937_RS04235 - phage holin family protein, at 935,473 to 935,778 _RS04235 DDA3937_RS04240: DDA3937_RS04240 - M15 family metallopeptidase, at 935,765 to 936,106 _RS04240 DDA3937_RS04245: DDA3937_RS04245 - hypothetical protein, at 936,106 to 936,462 _RS04245 Position (kb) 935 936Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 934.023 kb on - strand, within DDA3937_RS04225at 934.252 kb on + strand, within DDA3937_RS04225at 934.252 kb on + strand, within DDA3937_RS04225at 934.252 kb on + strand, within DDA3937_RS04225at 934.341 kb on + strand, within DDA3937_RS04225at 934.341 kb on + strand, within DDA3937_RS04225at 934.342 kb on - strand, within DDA3937_RS04225at 934.345 kb on + strand, within DDA3937_RS04225at 934.359 kb on - strand, within DDA3937_RS04225at 934.359 kb on - strand, within DDA3937_RS04225at 934.568 kb on - strand, within DDA3937_RS04225at 934.590 kb on + strand, within DDA3937_RS04225at 934.617 kb on + strand, within DDA3937_RS04225at 934.617 kb on + strand, within DDA3937_RS04225at 934.626 kb on + strand, within DDA3937_RS04225at 934.627 kb on - strand, within DDA3937_RS04225at 934.629 kb on + strand, within DDA3937_RS04225at 934.630 kb on - strand, within DDA3937_RS04225at 934.630 kb on - strand, within DDA3937_RS04225at 934.630 kb on - strand, within DDA3937_RS04225at 934.671 kb on + strand, within DDA3937_RS04225at 934.797 kb on + strand, within DDA3937_RS04225at 934.797 kb on + strand, within DDA3937_RS04225at 934.798 kb on - strand, within DDA3937_RS04225at 934.798 kb on - strand, within DDA3937_RS04225at 934.944 kb on - strandat 934.947 kb on + strandat 934.947 kb on + strandat 934.947 kb on + strandat 934.948 kb on - strandat 934.948 kb on - strandat 934.948 kb on - strandat 934.988 kb on + strandat 934.988 kb on + strandat 934.989 kb on - strandat 934.989 kb on - strandat 935.178 kb on + strand, within DDA3937_RS04230at 935.178 kb on + strand, within DDA3937_RS04230at 935.178 kb on + strand, within DDA3937_RS04230at 935.178 kb on + strand, within DDA3937_RS04230at 935.178 kb on + strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.179 kb on - strand, within DDA3937_RS04230at 935.183 kb on - strand, within DDA3937_RS04230at 935.265 kb on - strand, within DDA3937_RS04230at 935.377 kb on + strand, within DDA3937_RS04230at 935.378 kb on - strand, within DDA3937_RS04230at 935.378 kb on - strand, within DDA3937_RS04230at 935.483 kb on - strandat 935.504 kb on + strand, within DDA3937_RS04235at 935.535 kb on + strand, within DDA3937_RS04235at 935.733 kb on + strand, within DDA3937_RS04235at 935.734 kb on - strand, within DDA3937_RS04235at 935.736 kb on + strand, within DDA3937_RS04235at 935.736 kb on + strand, within DDA3937_RS04235at 935.736 kb on + strand, within DDA3937_RS04235at 935.736 kb on + strand, within DDA3937_RS04235at 935.736 kb on + strand, within DDA3937_RS04235at 935.737 kb on - strand, within DDA3937_RS04235at 935.737 kb on - strand, within DDA3937_RS04235at 935.737 kb on - strand, within DDA3937_RS04235at 935.737 kb on - strand, within DDA3937_RS04235at 935.772 kb on + strandat 935.772 kb on + strandat 935.773 kb on - strandat 935.773 kb on - strandat 935.790 kb on + strandat 935.790 kb on + strandat 935.791 kb on - strandat 935.791 kb on - strandat 935.864 kb on + strand, within DDA3937_RS04240at 935.865 kb on - strand, within DDA3937_RS04240at 935.929 kb on + strand, within DDA3937_RS04240at 935.975 kb on + strand, within DDA3937_RS04240at 935.996 kb on + strand, within DDA3937_RS04240at 935.996 kb on + strand, within DDA3937_RS04240at 935.996 kb on + strand, within DDA3937_RS04240at 935.997 kb on - strand, within DDA3937_RS04240at 936.249 kb on - strand, within DDA3937_RS04245at 936.249 kb on - strand, within DDA3937_RS04245at 936.302 kb on + strand, within DDA3937_RS04245at 936.303 kb on - strand, within DDA3937_RS04245at 936.355 kb on - strand, within DDA3937_RS04245at 936.355 kb on - strand, within DDA3937_RS04245at 936.358 kb on - strand, within DDA3937_RS04245at 936.392 kb on - strand, within DDA3937_RS04245at 936.392 kb on - strand, within DDA3937_RS04245at 936.425 kb on + strand, within DDA3937_RS04245at 936.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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934,023 - DDA3937_RS04225 0.11 -3.0
934,252 + DDA3937_RS04225 0.32 +0.9
934,252 + DDA3937_RS04225 0.32 +1.7
934,252 + DDA3937_RS04225 0.32 +2.6
934,341 + DDA3937_RS04225 0.40 +3.8
934,341 + DDA3937_RS04225 0.40 +3.2
934,342 - DDA3937_RS04225 0.40 -0.7
934,345 + DDA3937_RS04225 0.40 +1.7
934,359 - DDA3937_RS04225 0.41 -0.2
934,359 - DDA3937_RS04225 0.41 -0.0
934,568 - DDA3937_RS04225 0.60 +0.6
934,590 + DDA3937_RS04225 0.62 -2.6
934,617 + DDA3937_RS04225 0.65 +1.7
934,617 + DDA3937_RS04225 0.65 +3.7
934,626 + DDA3937_RS04225 0.65 +2.2
934,627 - DDA3937_RS04225 0.65 +2.5
934,629 + DDA3937_RS04225 0.66 +2.6
934,630 - DDA3937_RS04225 0.66 -1.8
934,630 - DDA3937_RS04225 0.66 +1.4
934,630 - DDA3937_RS04225 0.66 -0.0
934,671 + DDA3937_RS04225 0.69 -0.4
934,797 + DDA3937_RS04225 0.81 -2.1
934,797 + DDA3937_RS04225 0.81 +1.1
934,798 - DDA3937_RS04225 0.81 +1.2
934,798 - DDA3937_RS04225 0.81 -2.8
934,944 - -0.0
934,947 + +3.9
934,947 + +2.7
934,947 + +2.2
934,948 - -2.3
934,948 - -0.0
934,948 - -0.0
934,988 + +4.1
934,988 + +4.9
934,989 - -2.4
934,989 - -2.4
935,178 + DDA3937_RS04230 0.37 +0.2
935,178 + DDA3937_RS04230 0.37 +3.1
935,178 + DDA3937_RS04230 0.37 +3.5
935,178 + DDA3937_RS04230 0.37 -3.3
935,178 + DDA3937_RS04230 0.37 +0.6
935,179 - DDA3937_RS04230 0.37 -0.3
935,179 - DDA3937_RS04230 0.37 -2.8
935,179 - DDA3937_RS04230 0.37 +0.3
935,179 - DDA3937_RS04230 0.37 +3.4
935,179 - DDA3937_RS04230 0.37 -1.6
935,179 - DDA3937_RS04230 0.37 -1.3
935,179 - DDA3937_RS04230 0.37 -2.0
935,179 - DDA3937_RS04230 0.37 +0.2
935,179 - DDA3937_RS04230 0.37 -2.4
935,179 - DDA3937_RS04230 0.37 -2.6
935,183 - DDA3937_RS04230 0.38 +1.1
935,265 - DDA3937_RS04230 0.56 -3.6
935,377 + DDA3937_RS04230 0.81 +4.3
935,378 - DDA3937_RS04230 0.81 -1.6
935,378 - DDA3937_RS04230 0.81 -2.5
935,483 - +0.7
935,504 + DDA3937_RS04235 0.10 -2.8
935,535 + DDA3937_RS04235 0.20 +0.6
935,733 + DDA3937_RS04235 0.85 +2.5
935,734 - DDA3937_RS04235 0.85 -0.6
935,736 + DDA3937_RS04235 0.86 +2.4
935,736 + DDA3937_RS04235 0.86 +5.3
935,736 + DDA3937_RS04235 0.86 +2.0
935,736 + DDA3937_RS04235 0.86 +2.3
935,736 + DDA3937_RS04235 0.86 +3.6
935,737 - DDA3937_RS04235 0.86 -1.3
935,737 - DDA3937_RS04235 0.86 +0.8
935,737 - DDA3937_RS04235 0.86 +1.9
935,737 - DDA3937_RS04235 0.86 -1.3
935,772 + +1.8
935,772 + +3.8
935,773 - -0.4
935,773 - +0.3
935,790 + -1.6
935,790 + +0.9
935,791 - +0.9
935,791 - -1.3
935,864 + DDA3937_RS04240 0.29 -2.7
935,865 - DDA3937_RS04240 0.29 -1.4
935,929 + DDA3937_RS04240 0.48 +0.3
935,975 + DDA3937_RS04240 0.61 -1.0
935,996 + DDA3937_RS04240 0.68 -0.8
935,996 + DDA3937_RS04240 0.68 +2.0
935,996 + DDA3937_RS04240 0.68 +0.6
935,997 - DDA3937_RS04240 0.68 +0.7
936,249 - DDA3937_RS04245 0.40 -0.1
936,249 - DDA3937_RS04245 0.40 -3.6
936,302 + DDA3937_RS04245 0.55 -2.0
936,303 - DDA3937_RS04245 0.55 -1.4
936,355 - DDA3937_RS04245 0.70 -0.3
936,355 - DDA3937_RS04245 0.70 -2.3
936,358 - DDA3937_RS04245 0.71 -1.2
936,392 - DDA3937_RS04245 0.80 -2.6
936,392 - DDA3937_RS04245 0.80 +0.5
936,425 + DDA3937_RS04245 0.89 +2.7
936,461 - -3.4

Or see this region's nucleotide sequence