Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04095 and DDA3937_RS04100 are separated by 11 nucleotides DDA3937_RS04100 and DDA3937_RS04105 are separated by 13 nucleotides
DDA3937_RS04095: DDA3937_RS04095 - PAAR domain-containing protein, at 907,392 to 911,696
_RS04095
DDA3937_RS04100: DDA3937_RS04100 - DUF1795 domain-containing protein, at 911,708 to 912,115
_RS04100
DDA3937_RS04105: DDA3937_RS04105 - type VI secretion system tip protein VgrG, at 912,129 to 913,982
_RS04105
Position (kb) 911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 910.846 kb on + strand, within DDA3937_RS04095 at 910.846 kb on + strand, within DDA3937_RS04095 at 910.846 kb on + strand, within DDA3937_RS04095 at 910.846 kb on + strand, within DDA3937_RS04095 at 910.847 kb on - strand, within DDA3937_RS04095 at 910.872 kb on + strand, within DDA3937_RS04095 at 910.872 kb on + strand, within DDA3937_RS04095 at 910.872 kb on + strand, within DDA3937_RS04095 at 910.872 kb on + strand, within DDA3937_RS04095 at 910.872 kb on + strand, within DDA3937_RS04095 at 910.873 kb on - strand, within DDA3937_RS04095 at 910.986 kb on + strand, within DDA3937_RS04095 at 910.986 kb on + strand, within DDA3937_RS04095 at 910.986 kb on + strand, within DDA3937_RS04095 at 910.986 kb on + strand, within DDA3937_RS04095 at 910.987 kb on - strand, within DDA3937_RS04095 at 910.989 kb on + strand, within DDA3937_RS04095 at 911.119 kb on + strand, within DDA3937_RS04095 at 911.119 kb on + strand, within DDA3937_RS04095 at 911.119 kb on + strand, within DDA3937_RS04095 at 911.119 kb on + strand, within DDA3937_RS04095 at 911.119 kb on + strand, within DDA3937_RS04095 at 911.119 kb on + strand, within DDA3937_RS04095 at 911.120 kb on - strand, within DDA3937_RS04095 at 911.120 kb on - strand, within DDA3937_RS04095 at 911.120 kb on - strand, within DDA3937_RS04095 at 911.120 kb on - strand, within DDA3937_RS04095 at 911.120 kb on - strand, within DDA3937_RS04095 at 911.146 kb on - strand, within DDA3937_RS04095 at 911.792 kb on - strand, within DDA3937_RS04100 at 911.866 kb on + strand, within DDA3937_RS04100 at 911.868 kb on + strand, within DDA3937_RS04100 at 911.869 kb on - strand, within DDA3937_RS04100 at 911.928 kb on + strand, within DDA3937_RS04100 at 911.970 kb on + strand, within DDA3937_RS04100 at 911.971 kb on - strand, within DDA3937_RS04100 at 912.111 kb on + strand at 912.111 kb on + strand at 912.111 kb on + strand at 912.111 kb on + strand at 912.111 kb on + strand at 912.473 kb on + strand, within DDA3937_RS04105 at 912.474 kb on - strand, within DDA3937_RS04105 at 912.839 kb on - strand, within DDA3937_RS04105 at 912.839 kb on - strand, within DDA3937_RS04105 at 912.901 kb on + strand, within DDA3937_RS04105 at 913.076 kb on + strand, within DDA3937_RS04105
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 910,846 + DDA3937_RS04095 0.80 -1.2 910,846 + DDA3937_RS04095 0.80 -1.6 910,846 + DDA3937_RS04095 0.80 -1.1 910,846 + DDA3937_RS04095 0.80 -3.0 910,847 - DDA3937_RS04095 0.80 +2.7 910,872 + DDA3937_RS04095 0.81 -0.0 910,872 + DDA3937_RS04095 0.81 +1.1 910,872 + DDA3937_RS04095 0.81 -3.2 910,872 + DDA3937_RS04095 0.81 +0.3 910,872 + DDA3937_RS04095 0.81 -0.3 910,873 - DDA3937_RS04095 0.81 +0.5 910,986 + DDA3937_RS04095 0.83 -2.5 910,986 + DDA3937_RS04095 0.83 +2.0 910,986 + DDA3937_RS04095 0.83 -3.2 910,986 + DDA3937_RS04095 0.83 +1.8 910,987 - DDA3937_RS04095 0.84 +0.9 910,989 + DDA3937_RS04095 0.84 +1.3 911,119 + DDA3937_RS04095 0.87 +0.1 911,119 + DDA3937_RS04095 0.87 +0.6 911,119 + DDA3937_RS04095 0.87 +0.5 911,119 + DDA3937_RS04095 0.87 -2.3 911,119 + DDA3937_RS04095 0.87 +0.5 911,119 + DDA3937_RS04095 0.87 +1.8 911,120 - DDA3937_RS04095 0.87 -0.5 911,120 - DDA3937_RS04095 0.87 +0.6 911,120 - DDA3937_RS04095 0.87 +0.9 911,120 - DDA3937_RS04095 0.87 -2.5 911,120 - DDA3937_RS04095 0.87 -1.9 911,146 - DDA3937_RS04095 0.87 -1.5 911,792 - DDA3937_RS04100 0.21 +1.1 911,866 + DDA3937_RS04100 0.39 +1.4 911,868 + DDA3937_RS04100 0.39 -1.1 911,869 - DDA3937_RS04100 0.39 -2.1 911,928 + DDA3937_RS04100 0.54 +0.2 911,970 + DDA3937_RS04100 0.64 +0.8 911,971 - DDA3937_RS04100 0.64 -0.5 912,111 + +0.2 912,111 + -1.8 912,111 + +0.6 912,111 + -0.4 912,111 + -2.8 912,473 + DDA3937_RS04105 0.19 +2.1 912,474 - DDA3937_RS04105 0.19 -1.8 912,839 - DDA3937_RS04105 0.38 -3.0 912,839 - DDA3937_RS04105 0.38 +2.0 912,901 + DDA3937_RS04105 0.42 +2.5 913,076 + DDA3937_RS04105 0.51 +0.5
Or see this region's nucleotide sequence