Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03760 and DDA3937_RS03765 are separated by 246 nucleotides DDA3937_RS03765 and DDA3937_RS21865 are separated by 52 nucleotides DDA3937_RS21865 and DDA3937_RS03775 are separated by 568 nucleotides
DDA3937_RS03760: DDA3937_RS03760 - o-succinylbenzoate synthase, at 833,154 to 834,266
_RS03760
DDA3937_RS03765: DDA3937_RS03765 - nucleoside recognition family protein, at 834,513 to 835,445
_RS03765
DDA3937_RS21865: DDA3937_RS21865 - zinc-ribbon domain-containing protein, at 835,498 to 835,770
_RS21865
DDA3937_RS03775: DDA3937_RS03775 - transporter substrate-binding domain-containing protein, at 836,339 to 837,121
_RS03775
Position (kb) 834
835
836 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 833.557 kb on + strand, within DDA3937_RS03760 at 833.558 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.670 kb on + strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand at 833.705 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.775 kb on + strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.836 kb on + strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.936 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.048 kb on - strand, within DDA3937_RS03760 at 834.225 kb on + strand at 834.226 kb on - strand at 834.226 kb on - strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.241 kb on - strand at 834.241 kb on - strand at 834.264 kb on + strand at 834.265 kb on - strand at 834.305 kb on + strand at 834.317 kb on + strand at 834.317 kb on + strand at 834.317 kb on + strand at 834.318 kb on - strand at 834.318 kb on - strand at 834.318 kb on - strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.322 kb on - strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.572 kb on + strand at 834.572 kb on + strand at 834.572 kb on + strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.692 kb on + strand, within DDA3937_RS03765 at 834.693 kb on - strand, within DDA3937_RS03765 at 834.792 kb on - strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.839 kb on - strand at 834.839 kb on - strand, within DDA3937_RS03765 at 834.839 kb on - strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.887 kb on - strand, within DDA3937_RS03765 at 834.887 kb on - strand, within DDA3937_RS03765 at 834.889 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 835.025 kb on + strand, within DDA3937_RS03765 at 835.025 kb on + strand, within DDA3937_RS03765 at 835.026 kb on - strand, within DDA3937_RS03765 at 835.026 kb on - strand, within DDA3937_RS03765 at 835.028 kb on + strand, within DDA3937_RS03765 at 835.088 kb on + strand, within DDA3937_RS03765 at 835.172 kb on + strand at 835.173 kb on - strand, within DDA3937_RS03765 at 835.173 kb on - strand, within DDA3937_RS03765 at 835.230 kb on + strand, within DDA3937_RS03765 at 835.310 kb on - strand, within DDA3937_RS03765 at 835.496 kb on + strand at 835.496 kb on + strand at 835.496 kb on + strand at 835.547 kb on - strand, within DDA3937_RS21865 at 835.764 kb on + strand at 835.770 kb on + strand at 835.770 kb on + strand at 835.770 kb on + strand at 835.770 kb on + strand at 835.770 kb on + strand at 835.771 kb on - strand at 835.771 kb on - strand at 835.771 kb on - strand at 835.774 kb on + strand at 835.774 kb on + strand at 835.774 kb on + strand at 835.774 kb on + strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.823 kb on - strand at 835.862 kb on - strand at 835.862 kb on - strand at 835.862 kb on - strand at 835.865 kb on + strand at 835.865 kb on + strand at 835.866 kb on - strand at 835.866 kb on - strand at 835.870 kb on + strand at 835.871 kb on - strand at 835.883 kb on + strand at 835.883 kb on + strand at 835.884 kb on - strand at 835.884 kb on - strand at 835.886 kb on + strand at 835.886 kb on + strand at 835.886 kb on + strand at 835.886 kb on + strand at 835.886 kb on + strand at 835.887 kb on - strand at 835.887 kb on - strand at 835.887 kb on - strand at 835.888 kb on + strand at 835.888 kb on + strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.901 kb on + strand at 835.902 kb on - strand at 835.919 kb on + strand at 835.919 kb on + strand at 835.919 kb on + strand at 835.919 kb on + strand at 835.920 kb on - strand at 835.920 kb on - strand at 835.920 kb on - strand at 835.922 kb on + strand at 835.923 kb on - strand at 836.040 kb on - strand at 836.040 kb on - strand at 836.105 kb on + strand at 836.106 kb on - strand at 836.167 kb on + strand at 836.167 kb on + strand at 836.301 kb on - strand at 836.305 kb on + strand at 836.305 kb on + strand at 836.305 kb on + strand at 836.306 kb on - strand at 836.306 kb on - strand at 836.306 kb on - strand at 836.306 kb on - strand at 836.306 kb on - strand at 836.354 kb on + strand at 836.374 kb on - strand at 836.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 833,557 + DDA3937_RS03760 0.36 +0.6 833,558 - DDA3937_RS03760 0.36 +0.0 833,643 - DDA3937_RS03760 0.44 -3.4 833,643 - DDA3937_RS03760 0.44 +0.4 833,670 + DDA3937_RS03760 0.46 +1.3 833,671 - DDA3937_RS03760 0.46 -1.5 833,671 - DDA3937_RS03760 0.46 -2.7 833,671 - DDA3937_RS03760 0.46 -3.1 833,672 + DDA3937_RS03760 0.47 -2.0 833,672 + DDA3937_RS03760 0.47 -2.3 833,673 - DDA3937_RS03760 0.47 -2.4 833,673 - DDA3937_RS03760 0.47 -3.2 833,673 - -0.4 833,705 + DDA3937_RS03760 0.50 -2.8 833,747 + DDA3937_RS03760 0.53 -2.7 833,747 + DDA3937_RS03760 0.53 -2.9 833,775 + DDA3937_RS03760 0.56 +2.0 833,776 - DDA3937_RS03760 0.56 +1.6 833,776 - DDA3937_RS03760 0.56 -1.2 833,836 + DDA3937_RS03760 0.61 +1.0 833,837 - DDA3937_RS03760 0.61 -3.7 833,837 - DDA3937_RS03760 0.61 +0.9 833,936 + DDA3937_RS03760 0.70 -1.0 834,047 + DDA3937_RS03760 0.80 -0.7 834,047 + DDA3937_RS03760 0.80 -1.8 834,048 - DDA3937_RS03760 0.80 -1.9 834,225 + +0.8 834,226 - -1.0 834,226 - +2.0 834,240 + -1.3 834,240 + -3.2 834,240 + -2.0 834,240 + +0.2 834,241 - +3.6 834,241 - -2.0 834,264 + -2.1 834,265 - +0.4 834,305 + +0.9 834,317 + +0.5 834,317 + -0.0 834,317 + -2.7 834,318 - -0.4 834,318 - -0.2 834,318 - -3.0 834,321 + +1.2 834,321 + -0.4 834,321 + -2.0 834,321 + -1.4 834,321 + -0.2 834,321 + +0.3 834,322 - -2.9 834,338 + -2.0 834,338 + -1.6 834,338 + -0.5 834,338 + -1.6 834,339 - -0.8 834,339 - +1.3 834,339 - -1.8 834,339 - -0.4 834,479 + -1.9 834,479 + +0.8 834,479 + -0.9 834,479 + +1.3 834,480 - +2.4 834,480 - +0.2 834,480 - +0.6 834,480 - -2.8 834,480 - -0.4 834,480 - -0.3 834,510 + -0.8 834,510 + -2.0 834,510 + +2.2 834,510 + +0.1 834,510 + -2.5 834,510 + -1.3 834,511 - -0.5 834,511 - -1.0 834,511 - +1.5 834,511 - -1.8 834,511 - -0.6 834,511 - -2.2 834,511 - +0.7 834,511 - +0.3 834,570 + -1.3 834,570 + -0.5 834,570 + +0.1 834,570 + +1.8 834,571 - -2.7 834,571 - -0.3 834,571 - +2.0 834,571 - -2.4 834,572 + -2.4 834,572 + -2.0 834,572 + -0.4 834,573 - -2.4 834,573 - -2.1 834,573 - +0.3 834,573 - -1.7 834,573 - +1.6 834,573 - -2.6 834,573 - +1.0 834,692 + DDA3937_RS03765 0.19 +2.2 834,693 - DDA3937_RS03765 0.19 -2.1 834,792 - DDA3937_RS03765 0.30 +0.0 834,838 + DDA3937_RS03765 0.35 -3.7 834,838 + DDA3937_RS03765 0.35 +1.4 834,838 + DDA3937_RS03765 0.35 +0.8 834,838 + +0.6 834,838 + DDA3937_RS03765 0.35 +1.6 834,838 + DDA3937_RS03765 0.35 -0.6 834,838 + DDA3937_RS03765 0.35 -1.8 834,839 - -0.8 834,839 - DDA3937_RS03765 0.35 +0.7 834,839 - DDA3937_RS03765 0.35 +0.4 834,886 + DDA3937_RS03765 0.40 -0.1 834,886 + DDA3937_RS03765 0.40 +1.3 834,886 + DDA3937_RS03765 0.40 +0.2 834,887 - DDA3937_RS03765 0.40 -3.0 834,887 - DDA3937_RS03765 0.40 -1.2 834,889 + DDA3937_RS03765 0.40 +0.2 834,927 + DDA3937_RS03765 0.44 -0.2 834,927 + DDA3937_RS03765 0.44 -1.3 834,927 + DDA3937_RS03765 0.44 -0.5 834,927 + DDA3937_RS03765 0.44 +0.7 834,927 + DDA3937_RS03765 0.44 +2.0 834,927 + DDA3937_RS03765 0.44 -0.4 834,928 - DDA3937_RS03765 0.44 +0.6 834,928 - DDA3937_RS03765 0.44 -0.5 834,928 - DDA3937_RS03765 0.44 +0.6 834,928 - DDA3937_RS03765 0.44 -1.8 834,928 - DDA3937_RS03765 0.44 -2.4 834,928 - DDA3937_RS03765 0.44 +1.1 834,928 - DDA3937_RS03765 0.44 -2.4 835,025 + DDA3937_RS03765 0.55 +2.0 835,025 + DDA3937_RS03765 0.55 -0.4 835,026 - DDA3937_RS03765 0.55 +0.3 835,026 - DDA3937_RS03765 0.55 -0.0 835,028 + DDA3937_RS03765 0.55 -3.5 835,088 + DDA3937_RS03765 0.62 -2.3 835,172 + -1.0 835,173 - DDA3937_RS03765 0.71 -0.0 835,173 - DDA3937_RS03765 0.71 -1.8 835,230 + DDA3937_RS03765 0.77 +0.3 835,310 - DDA3937_RS03765 0.85 +0.6 835,496 + -3.2 835,496 + -0.5 835,496 + -0.2 835,547 - DDA3937_RS21865 0.18 +0.2 835,764 + -2.1 835,770 + -0.0 835,770 + -3.2 835,770 + -0.8 835,770 + -0.2 835,770 + -3.0 835,771 - -0.8 835,771 - +3.7 835,771 - -0.1 835,774 + +0.6 835,774 + +1.0 835,774 + -0.9 835,774 + -1.2 835,775 - -1.2 835,775 - -3.8 835,775 - -0.3 835,775 - -0.3 835,775 - +0.2 835,775 - -1.8 835,775 - +1.1 835,823 - -1.2 835,862 - -2.3 835,862 - -2.8 835,862 - +0.3 835,865 + +1.4 835,865 + +0.9 835,866 - +0.4 835,866 - -2.5 835,870 + -2.1 835,871 - -1.3 835,883 + +1.7 835,883 + +1.1 835,884 - -0.8 835,884 - +1.5 835,886 + +0.1 835,886 + -2.7 835,886 + +1.4 835,886 + -1.0 835,886 + -2.2 835,887 - +0.7 835,887 - +3.2 835,887 - +0.2 835,888 + -0.3 835,888 + -2.2 835,889 - -3.8 835,889 - +0.8 835,889 - -2.3 835,889 - +1.0 835,901 + -2.6 835,902 - -0.8 835,919 + -1.7 835,919 + -0.8 835,919 + -1.5 835,919 + +1.6 835,920 - -0.0 835,920 - -0.8 835,920 - -1.2 835,922 + -1.9 835,923 - +2.4 836,040 - -1.4 836,040 - -0.0 836,105 + +0.2 836,106 - +1.6 836,167 + -3.6 836,167 + -1.8 836,301 - -1.4 836,305 + +1.7 836,305 + -1.8 836,305 + -2.4 836,306 - +0.8 836,306 - +1.1 836,306 - +0.5 836,306 - -0.4 836,306 - +2.6 836,354 + -0.8 836,374 - -0.4 836,412 - -0.8
Or see this region's nucleotide sequence