Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03500 and DDA3937_RS03505 are separated by 86 nucleotides DDA3937_RS03505 and DDA3937_RS03510 overlap by 4 nucleotides DDA3937_RS03510 and DDA3937_RS03515 are separated by 1 nucleotides
DDA3937_RS03500: DDA3937_RS03500 - ABC transporter substrate-binding protein, at 769,945 to 771,555
_RS03500
DDA3937_RS03505: DDA3937_RS03505 - ABC transporter permease, at 771,642 to 772,700
_RS03505
DDA3937_RS03510: DDA3937_RS03510 - ABC transporter permease, at 772,697 to 773,602
_RS03510
DDA3937_RS03515: DDA3937_RS03515 - ATP-binding cassette domain-containing protein, at 773,604 to 774,467
_RS03515
Position (kb) 771
772
773 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 770.764 kb on - strand, within DDA3937_RS03500 at 770.772 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.813 kb on - strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500 at 770.842 kb on + strand, within DDA3937_RS03500 at 770.842 kb on + strand, within DDA3937_RS03500 at 770.879 kb on - strand, within DDA3937_RS03500 at 770.988 kb on + strand, within DDA3937_RS03500 at 770.988 kb on + strand, within DDA3937_RS03500 at 770.988 kb on + strand, within DDA3937_RS03500 at 770.988 kb on + strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 771.169 kb on + strand, within DDA3937_RS03500 at 771.169 kb on + strand, within DDA3937_RS03500 at 771.170 kb on - strand, within DDA3937_RS03500 at 771.170 kb on - strand, within DDA3937_RS03500 at 771.227 kb on + strand, within DDA3937_RS03500 at 771.227 kb on + strand at 771.228 kb on - strand, within DDA3937_RS03500 at 771.228 kb on - strand, within DDA3937_RS03500 at 771.228 kb on - strand, within DDA3937_RS03500 at 771.265 kb on + strand, within DDA3937_RS03500 at 771.265 kb on + strand, within DDA3937_RS03500 at 771.266 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.421 kb on + strand at 771.422 kb on - strand at 771.422 kb on - strand at 771.433 kb on + strand at 771.444 kb on + strand at 771.445 kb on - strand at 771.499 kb on + strand at 771.499 kb on + strand at 771.499 kb on + strand at 771.499 kb on + strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.542 kb on - strand at 771.542 kb on - strand at 771.553 kb on + strand at 771.554 kb on - strand at 771.680 kb on + strand at 771.719 kb on - strand at 771.719 kb on - strand at 771.748 kb on + strand, within DDA3937_RS03505 at 771.748 kb on + strand, within DDA3937_RS03505 at 771.749 kb on - strand, within DDA3937_RS03505 at 771.749 kb on - strand, within DDA3937_RS03505 at 771.834 kb on + strand, within DDA3937_RS03505 at 771.834 kb on + strand, within DDA3937_RS03505 at 771.835 kb on - strand, within DDA3937_RS03505 at 771.846 kb on + strand, within DDA3937_RS03505 at 771.846 kb on + strand, within DDA3937_RS03505 at 771.876 kb on + strand, within DDA3937_RS03505 at 771.877 kb on - strand, within DDA3937_RS03505 at 771.894 kb on + strand, within DDA3937_RS03505 at 772.010 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.081 kb on - strand at 772.081 kb on - strand, within DDA3937_RS03505 at 772.081 kb on - strand, within DDA3937_RS03505 at 772.081 kb on - strand, within DDA3937_RS03505 at 772.081 kb on - strand, within DDA3937_RS03505 at 772.081 kb on - strand, within DDA3937_RS03505 at 772.094 kb on + strand, within DDA3937_RS03505 at 772.094 kb on + strand, within DDA3937_RS03505 at 772.095 kb on - strand, within DDA3937_RS03505 at 772.095 kb on - strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.207 kb on - strand, within DDA3937_RS03505 at 772.277 kb on - strand, within DDA3937_RS03505 at 772.341 kb on + strand, within DDA3937_RS03505 at 772.342 kb on - strand, within DDA3937_RS03505 at 772.342 kb on - strand, within DDA3937_RS03505 at 772.342 kb on - strand, within DDA3937_RS03505 at 772.352 kb on + strand, within DDA3937_RS03505 at 772.392 kb on + strand, within DDA3937_RS03505 at 772.392 kb on + strand, within DDA3937_RS03505 at 772.393 kb on - strand, within DDA3937_RS03505 at 772.393 kb on - strand, within DDA3937_RS03505 at 772.393 kb on - strand, within DDA3937_RS03505 at 772.469 kb on - strand, within DDA3937_RS03505 at 772.498 kb on - strand, within DDA3937_RS03505 at 772.523 kb on - strand, within DDA3937_RS03505 at 772.526 kb on - strand, within DDA3937_RS03505 at 772.563 kb on + strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.564 kb on - strand, within DDA3937_RS03505 at 772.668 kb on + strand at 772.668 kb on + strand at 772.668 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.697 kb on - strand at 772.821 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.975 kb on + strand, within DDA3937_RS03510 at 772.975 kb on + strand, within DDA3937_RS03510 at 772.976 kb on - strand, within DDA3937_RS03510 at 772.976 kb on - strand, within DDA3937_RS03510 at 772.988 kb on + strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.011 kb on + strand, within DDA3937_RS03510 at 773.078 kb on + strand, within DDA3937_RS03510 at 773.110 kb on + strand, within DDA3937_RS03510 at 773.111 kb on - strand, within DDA3937_RS03510 at 773.111 kb on - strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.207 kb on - strand, within DDA3937_RS03510 at 773.571 kb on + strand at 773.571 kb on + strand at 773.571 kb on + strand at 773.572 kb on - strand at 773.572 kb on - strand at 773.600 kb on + strand at 773.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 770,764 - DDA3937_RS03500 0.51 -0.7 770,772 + DDA3937_RS03500 0.51 -1.7 770,812 + DDA3937_RS03500 0.54 -0.9 770,812 + DDA3937_RS03500 0.54 +1.0 770,812 + DDA3937_RS03500 0.54 -3.2 770,813 - DDA3937_RS03500 0.54 -0.7 770,815 + DDA3937_RS03500 0.54 -3.1 770,815 + DDA3937_RS03500 0.54 -0.8 770,815 + DDA3937_RS03500 0.54 -3.1 770,816 - DDA3937_RS03500 0.54 -1.6 770,816 - DDA3937_RS03500 0.54 +0.1 770,816 - DDA3937_RS03500 0.54 -2.3 770,842 + DDA3937_RS03500 0.56 +2.0 770,842 + DDA3937_RS03500 0.56 -1.9 770,879 - DDA3937_RS03500 0.58 -2.1 770,988 + DDA3937_RS03500 0.65 -0.7 770,988 + DDA3937_RS03500 0.65 -0.6 770,988 + DDA3937_RS03500 0.65 -2.1 770,988 + DDA3937_RS03500 0.65 +0.8 770,989 - DDA3937_RS03500 0.65 -1.0 770,989 - DDA3937_RS03500 0.65 +0.8 770,989 - DDA3937_RS03500 0.65 -0.5 770,989 - DDA3937_RS03500 0.65 +0.9 770,989 - DDA3937_RS03500 0.65 -1.3 770,989 - DDA3937_RS03500 0.65 -1.3 771,169 + DDA3937_RS03500 0.76 -2.0 771,169 + DDA3937_RS03500 0.76 -2.5 771,170 - DDA3937_RS03500 0.76 +2.4 771,170 - DDA3937_RS03500 0.76 -1.7 771,227 + DDA3937_RS03500 0.80 -2.1 771,227 + +0.0 771,228 - DDA3937_RS03500 0.80 +1.1 771,228 - DDA3937_RS03500 0.80 +1.4 771,228 - DDA3937_RS03500 0.80 +1.0 771,265 + DDA3937_RS03500 0.82 -3.1 771,265 + DDA3937_RS03500 0.82 +0.0 771,266 - DDA3937_RS03500 0.82 -2.6 771,329 - DDA3937_RS03500 0.86 -0.9 771,329 - DDA3937_RS03500 0.86 -0.4 771,329 - DDA3937_RS03500 0.86 -2.8 771,329 - DDA3937_RS03500 0.86 +0.1 771,329 - DDA3937_RS03500 0.86 +0.9 771,400 + -1.9 771,400 + -1.0 771,400 + -1.4 771,400 + +1.4 771,400 + -1.0 771,400 + -1.5 771,400 + -2.2 771,400 + -1.3 771,400 + -0.4 771,401 - +0.0 771,401 - +1.8 771,401 - +1.3 771,401 - +1.1 771,401 - +1.2 771,401 - -1.9 771,401 - -0.2 771,401 - -1.6 771,401 - +2.4 771,401 - -1.7 771,401 - -1.6 771,421 + -2.7 771,422 - -4.5 771,422 - -1.4 771,433 + -3.8 771,444 + -1.2 771,445 - -1.7 771,499 + -2.5 771,499 + +0.7 771,499 + +0.7 771,499 + -0.2 771,500 - +1.2 771,500 - -1.8 771,500 - +1.2 771,500 - -0.9 771,500 - -0.2 771,500 - -2.7 771,541 + -2.5 771,541 + -1.7 771,541 + +0.9 771,541 + -1.6 771,541 + -0.9 771,541 + +1.4 771,541 + +1.4 771,542 - -3.1 771,542 - +0.1 771,553 + -0.5 771,554 - -0.6 771,680 + -0.0 771,719 - +1.5 771,719 - -1.3 771,748 + DDA3937_RS03505 0.10 -2.1 771,748 + DDA3937_RS03505 0.10 -0.8 771,749 - DDA3937_RS03505 0.10 -2.5 771,749 - DDA3937_RS03505 0.10 +0.7 771,834 + DDA3937_RS03505 0.18 -2.1 771,834 + DDA3937_RS03505 0.18 -0.7 771,835 - DDA3937_RS03505 0.18 +0.8 771,846 + DDA3937_RS03505 0.19 -2.1 771,846 + DDA3937_RS03505 0.19 -2.6 771,876 + DDA3937_RS03505 0.22 -2.9 771,877 - DDA3937_RS03505 0.22 +1.4 771,894 + DDA3937_RS03505 0.24 -0.9 772,010 + DDA3937_RS03505 0.35 -1.0 772,080 + DDA3937_RS03505 0.41 -1.0 772,080 + DDA3937_RS03505 0.41 +0.4 772,080 + DDA3937_RS03505 0.41 -0.7 772,080 + DDA3937_RS03505 0.41 -2.4 772,080 + DDA3937_RS03505 0.41 -0.6 772,080 + DDA3937_RS03505 0.41 -1.6 772,081 - +0.6 772,081 - DDA3937_RS03505 0.41 -3.4 772,081 - DDA3937_RS03505 0.41 -2.2 772,081 - DDA3937_RS03505 0.41 -1.0 772,081 - DDA3937_RS03505 0.41 +3.2 772,081 - DDA3937_RS03505 0.41 +0.2 772,094 + DDA3937_RS03505 0.43 -2.1 772,094 + DDA3937_RS03505 0.43 -0.2 772,095 - DDA3937_RS03505 0.43 +0.7 772,095 - DDA3937_RS03505 0.43 -2.1 772,158 + DDA3937_RS03505 0.49 -0.0 772,158 + DDA3937_RS03505 0.49 -1.9 772,158 + DDA3937_RS03505 0.49 -1.4 772,158 + DDA3937_RS03505 0.49 +0.4 772,158 + DDA3937_RS03505 0.49 -2.6 772,158 + DDA3937_RS03505 0.49 -1.0 772,159 - DDA3937_RS03505 0.49 -0.8 772,159 - DDA3937_RS03505 0.49 -0.7 772,159 - DDA3937_RS03505 0.49 +2.0 772,159 - DDA3937_RS03505 0.49 +0.4 772,159 - DDA3937_RS03505 0.49 +1.6 772,207 - DDA3937_RS03505 0.53 -0.0 772,277 - DDA3937_RS03505 0.60 -2.8 772,341 + DDA3937_RS03505 0.66 +2.0 772,342 - DDA3937_RS03505 0.66 -1.4 772,342 - DDA3937_RS03505 0.66 -3.5 772,342 - DDA3937_RS03505 0.66 -0.3 772,352 + DDA3937_RS03505 0.67 -3.2 772,392 + DDA3937_RS03505 0.71 -1.6 772,392 + DDA3937_RS03505 0.71 -1.0 772,393 - DDA3937_RS03505 0.71 -2.0 772,393 - DDA3937_RS03505 0.71 -1.4 772,393 - DDA3937_RS03505 0.71 +1.2 772,469 - DDA3937_RS03505 0.78 +0.8 772,498 - DDA3937_RS03505 0.81 -1.7 772,523 - DDA3937_RS03505 0.83 -1.6 772,526 - DDA3937_RS03505 0.83 -2.0 772,563 + DDA3937_RS03505 0.87 -3.2 772,564 - DDA3937_RS03505 0.87 -3.2 772,564 - DDA3937_RS03505 0.87 +0.9 772,564 - DDA3937_RS03505 0.87 -2.7 772,564 - DDA3937_RS03505 0.87 -0.1 772,564 - DDA3937_RS03505 0.87 +0.8 772,564 - DDA3937_RS03505 0.87 -0.6 772,564 - DDA3937_RS03505 0.87 -0.0 772,564 - DDA3937_RS03505 0.87 -3.5 772,564 - DDA3937_RS03505 0.87 -0.0 772,668 + -0.0 772,668 + -3.0 772,668 + -0.3 772,696 + -0.7 772,696 + -1.9 772,696 + +1.1 772,697 - -2.2 772,821 + DDA3937_RS03510 0.14 -0.6 772,912 + DDA3937_RS03510 0.24 -3.6 772,912 + DDA3937_RS03510 0.24 +1.0 772,912 + DDA3937_RS03510 0.24 +0.6 772,912 + DDA3937_RS03510 0.24 -1.3 772,975 + DDA3937_RS03510 0.31 +2.0 772,975 + DDA3937_RS03510 0.31 -2.0 772,976 - DDA3937_RS03510 0.31 +0.7 772,976 - DDA3937_RS03510 0.31 +0.6 772,988 + DDA3937_RS03510 0.32 -1.4 772,989 - DDA3937_RS03510 0.32 -3.4 772,989 - DDA3937_RS03510 0.32 +0.8 772,989 - DDA3937_RS03510 0.32 -0.7 773,009 + DDA3937_RS03510 0.34 -2.5 773,009 + DDA3937_RS03510 0.34 +0.2 773,009 + DDA3937_RS03510 0.34 -2.4 773,009 + DDA3937_RS03510 0.34 -2.7 773,009 + DDA3937_RS03510 0.34 +0.3 773,009 + DDA3937_RS03510 0.34 +1.1 773,009 + DDA3937_RS03510 0.34 -2.4 773,009 + DDA3937_RS03510 0.34 -2.8 773,009 + DDA3937_RS03510 0.34 +0.7 773,009 + DDA3937_RS03510 0.34 -0.3 773,010 - DDA3937_RS03510 0.35 -1.5 773,010 - DDA3937_RS03510 0.35 -1.0 773,010 - DDA3937_RS03510 0.35 -1.2 773,010 - DDA3937_RS03510 0.35 -1.6 773,010 - DDA3937_RS03510 0.35 +1.9 773,010 - DDA3937_RS03510 0.35 -2.9 773,010 - DDA3937_RS03510 0.35 +0.8 773,010 - DDA3937_RS03510 0.35 -1.6 773,010 - DDA3937_RS03510 0.35 +0.8 773,011 + DDA3937_RS03510 0.35 -0.0 773,078 + DDA3937_RS03510 0.42 -0.6 773,110 + DDA3937_RS03510 0.46 -2.1 773,111 - DDA3937_RS03510 0.46 -2.2 773,111 - DDA3937_RS03510 0.46 -1.7 773,206 + DDA3937_RS03510 0.56 +0.6 773,206 + DDA3937_RS03510 0.56 -0.0 773,206 + DDA3937_RS03510 0.56 +1.1 773,206 + DDA3937_RS03510 0.56 +0.0 773,207 - DDA3937_RS03510 0.56 -1.0 773,571 + +1.2 773,571 + +1.7 773,571 + +0.7 773,572 - +1.3 773,572 - -0.7 773,600 + +0.7 773,622 - -0.2
Or see this region's nucleotide sequence