Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03125 and DDA3937_RS03130 overlap by 14 nucleotides DDA3937_RS03130 and DDA3937_RS03135 are separated by 414 nucleotides DDA3937_RS03135 and DDA3937_RS03140 are separated by 62 nucleotides
DDA3937_RS03125: DDA3937_RS03125 - N-acetyltransferase, at 689,649 to 690,152
_RS03125
DDA3937_RS03130: DDA3937_RS03130 - GIY-YIG nuclease family protein, at 690,139 to 690,513
_RS03130
DDA3937_RS03135: DDA3937_RS03135 - deoxyribose-phosphate aldolase, at 690,928 to 691,707
_RS03135
DDA3937_RS03140: DDA3937_RS03140 - thymidine phosphorylase, at 691,770 to 693,101
_RS03140
Position (kb) 690
691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.928 kb on + strand, within DDA3937_RS03125 at 689.929 kb on - strand, within DDA3937_RS03125 at 689.929 kb on - strand, within DDA3937_RS03125 at 689.961 kb on + strand, within DDA3937_RS03125 at 689.961 kb on + strand, within DDA3937_RS03125 at 689.964 kb on - strand, within DDA3937_RS03125 at 689.995 kb on - strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.039 kb on + strand, within DDA3937_RS03125 at 690.040 kb on - strand, within DDA3937_RS03125 at 690.040 kb on - strand, within DDA3937_RS03125 at 690.040 kb on - strand, within DDA3937_RS03125 at 690.079 kb on - strand, within DDA3937_RS03125 at 690.126 kb on + strand at 690.150 kb on + strand at 690.236 kb on + strand, within DDA3937_RS03130 at 690.237 kb on - strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.281 kb on + strand, within DDA3937_RS03130 at 690.282 kb on - strand, within DDA3937_RS03130 at 690.282 kb on - strand, within DDA3937_RS03130 at 690.282 kb on - strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.358 kb on + strand, within DDA3937_RS03130 at 690.359 kb on - strand, within DDA3937_RS03130 at 690.359 kb on - strand, within DDA3937_RS03130 at 690.359 kb on - strand, within DDA3937_RS03130 at 690.359 kb on - strand, within DDA3937_RS03130 at 690.370 kb on - strand, within DDA3937_RS03130 at 690.370 kb on - strand, within DDA3937_RS03130 at 690.380 kb on + strand, within DDA3937_RS03130 at 690.411 kb on - strand, within DDA3937_RS03130 at 690.411 kb on - strand, within DDA3937_RS03130 at 690.426 kb on + strand, within DDA3937_RS03130 at 690.426 kb on + strand, within DDA3937_RS03130 at 690.427 kb on - strand, within DDA3937_RS03130 at 690.427 kb on - strand, within DDA3937_RS03130 at 690.469 kb on + strand, within DDA3937_RS03130 at 690.470 kb on - strand, within DDA3937_RS03130 at 690.549 kb on + strand at 690.549 kb on + strand at 690.549 kb on + strand at 690.549 kb on + strand at 690.549 kb on + strand at 690.549 kb on + strand at 690.550 kb on - strand at 690.550 kb on - strand at 690.556 kb on - strand at 690.559 kb on + strand at 690.559 kb on + strand at 690.560 kb on - strand at 690.560 kb on - strand at 690.560 kb on - strand at 690.560 kb on - strand at 690.560 kb on - strand at 690.574 kb on + strand at 690.635 kb on - strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.702 kb on + strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.703 kb on - strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.704 kb on + strand at 690.705 kb on - strand at 690.705 kb on - strand at 690.705 kb on - strand at 690.705 kb on - strand at 690.705 kb on - strand at 690.705 kb on - strand at 690.705 kb on - strand at 690.729 kb on + strand at 690.729 kb on + strand at 690.730 kb on - strand at 690.745 kb on - strand at 690.752 kb on + strand at 690.798 kb on + strand at 690.799 kb on - strand at 690.820 kb on + strand at 690.840 kb on + strand at 690.853 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.938 kb on + strand at 690.939 kb on - strand at 690.939 kb on - strand at 690.977 kb on + strand at 690.999 kb on + strand at 691.000 kb on - strand at 691.068 kb on + strand, within DDA3937_RS03135 at 691.069 kb on - strand, within DDA3937_RS03135 at 691.069 kb on - strand at 691.069 kb on - strand at 691.069 kb on - strand, within DDA3937_RS03135 at 691.069 kb on - strand, within DDA3937_RS03135 at 691.072 kb on + strand, within DDA3937_RS03135 at 691.165 kb on - strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.344 kb on + strand, within DDA3937_RS03135 at 691.344 kb on + strand, within DDA3937_RS03135 at 691.402 kb on - strand, within DDA3937_RS03135 at 691.527 kb on + strand, within DDA3937_RS03135 at 691.571 kb on - strand, within DDA3937_RS03135 at 691.591 kb on - strand, within DDA3937_RS03135 at 691.665 kb on + strand at 691.752 kb on + strand at 691.920 kb on - strand, within DDA3937_RS03140 at 691.920 kb on - strand, within DDA3937_RS03140 at 692.091 kb on + strand, within DDA3937_RS03140 at 692.171 kb on + strand, within DDA3937_RS03140 at 692.172 kb on - strand, within DDA3937_RS03140 at 692.272 kb on - strand, within DDA3937_RS03140 at 692.272 kb on - strand, within DDA3937_RS03140 at 692.400 kb on - strand, within DDA3937_RS03140 at 692.409 kb on + strand, within DDA3937_RS03140 at 692.409 kb on + strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.456 kb on + strand, within DDA3937_RS03140 at 692.457 kb on - strand, within DDA3937_RS03140 at 692.536 kb on + strand, within DDA3937_RS03140 at 692.537 kb on - strand, within DDA3937_RS03140
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 689,928 + DDA3937_RS03125 0.55 +2.7 689,928 + DDA3937_RS03125 0.55 -1.6 689,928 + DDA3937_RS03125 0.55 +1.9 689,928 + DDA3937_RS03125 0.55 -1.9 689,928 + DDA3937_RS03125 0.55 +3.0 689,929 - DDA3937_RS03125 0.56 -1.3 689,929 - DDA3937_RS03125 0.56 -1.4 689,961 + DDA3937_RS03125 0.62 -0.1 689,961 + DDA3937_RS03125 0.62 +0.8 689,964 - DDA3937_RS03125 0.62 +3.1 689,995 - DDA3937_RS03125 0.69 -2.1 690,039 + DDA3937_RS03125 0.77 +0.8 690,039 + DDA3937_RS03125 0.77 +1.1 690,039 + DDA3937_RS03125 0.77 +1.4 690,039 + DDA3937_RS03125 0.77 -0.7 690,039 + DDA3937_RS03125 0.77 -2.2 690,039 + DDA3937_RS03125 0.77 +0.4 690,040 - DDA3937_RS03125 0.78 +0.5 690,040 - DDA3937_RS03125 0.78 -2.9 690,040 - DDA3937_RS03125 0.78 +2.2 690,079 - DDA3937_RS03125 0.85 -0.0 690,126 + +0.3 690,150 + +0.6 690,236 + DDA3937_RS03130 0.26 -2.5 690,237 - DDA3937_RS03130 0.26 +0.2 690,281 + DDA3937_RS03130 0.38 -3.3 690,281 + DDA3937_RS03130 0.38 -1.0 690,281 + DDA3937_RS03130 0.38 -0.5 690,281 + DDA3937_RS03130 0.38 -1.9 690,281 + DDA3937_RS03130 0.38 -0.4 690,281 + DDA3937_RS03130 0.38 -1.6 690,281 + DDA3937_RS03130 0.38 -1.0 690,282 - DDA3937_RS03130 0.38 -2.0 690,282 - DDA3937_RS03130 0.38 +1.0 690,282 - DDA3937_RS03130 0.38 -3.0 690,358 + DDA3937_RS03130 0.58 -0.6 690,358 + DDA3937_RS03130 0.58 -2.5 690,358 + DDA3937_RS03130 0.58 -0.2 690,358 + DDA3937_RS03130 0.58 -0.1 690,358 + DDA3937_RS03130 0.58 -2.4 690,358 + DDA3937_RS03130 0.58 -3.3 690,358 + DDA3937_RS03130 0.58 -0.7 690,358 + DDA3937_RS03130 0.58 +1.4 690,359 - DDA3937_RS03130 0.59 +2.9 690,359 - DDA3937_RS03130 0.59 +0.2 690,359 - DDA3937_RS03130 0.59 +0.4 690,359 - DDA3937_RS03130 0.59 -0.3 690,370 - DDA3937_RS03130 0.62 -0.3 690,370 - DDA3937_RS03130 0.62 -1.7 690,380 + DDA3937_RS03130 0.64 -2.4 690,411 - DDA3937_RS03130 0.73 +0.3 690,411 - DDA3937_RS03130 0.73 +0.0 690,426 + DDA3937_RS03130 0.77 -0.2 690,426 + DDA3937_RS03130 0.77 -1.6 690,427 - DDA3937_RS03130 0.77 -3.1 690,427 - DDA3937_RS03130 0.77 -2.4 690,469 + DDA3937_RS03130 0.88 +0.9 690,470 - DDA3937_RS03130 0.88 -0.4 690,549 + -0.8 690,549 + +0.5 690,549 + +1.0 690,549 + -2.2 690,549 + -2.2 690,549 + +0.3 690,550 - -3.9 690,550 - -2.8 690,556 - -2.0 690,559 + +1.4 690,559 + -2.9 690,560 - +0.9 690,560 - +1.3 690,560 - +1.7 690,560 - -0.0 690,560 - +0.5 690,574 + +0.6 690,635 - -1.2 690,702 + +0.0 690,702 + -1.3 690,702 + -1.4 690,702 + -0.7 690,702 + +2.0 690,702 + -2.0 690,702 + +0.7 690,702 + -0.4 690,702 + +2.2 690,702 + -0.2 690,703 - -3.0 690,703 - -0.4 690,703 - -1.9 690,703 - -1.2 690,703 - +2.5 690,703 - -3.9 690,703 - -3.6 690,703 - -0.4 690,703 - -1.0 690,703 - -0.7 690,703 - -1.3 690,703 - -1.7 690,703 - -3.5 690,704 + +0.9 690,704 + +0.9 690,704 + -3.0 690,704 + -3.4 690,704 + -0.4 690,704 + -3.2 690,704 + +0.5 690,704 + +2.6 690,704 + +0.6 690,704 + -1.6 690,704 + +0.6 690,704 + -2.1 690,704 + +2.1 690,704 + +0.3 690,705 - -3.3 690,705 - -1.4 690,705 - -0.2 690,705 - -0.1 690,705 - -1.4 690,705 - -1.9 690,705 - -1.3 690,729 + +0.5 690,729 + -2.6 690,730 - -4.5 690,745 - +1.9 690,752 + -2.7 690,798 + -1.5 690,799 - -0.4 690,820 + -0.1 690,840 + +0.8 690,853 + +0.1 690,927 + -2.7 690,927 + +0.6 690,927 + -0.5 690,927 + -3.8 690,927 + +1.7 690,927 + -1.6 690,928 - +0.6 690,928 - +0.0 690,928 - -2.5 690,928 - -0.5 690,928 - +3.4 690,938 + +1.4 690,939 - -1.4 690,939 - -0.5 690,977 + -3.2 690,999 + -1.7 691,000 - -1.4 691,068 + DDA3937_RS03135 0.18 -1.1 691,069 - DDA3937_RS03135 0.18 -3.5 691,069 - -0.4 691,069 - -0.7 691,069 - DDA3937_RS03135 0.18 -0.5 691,069 - DDA3937_RS03135 0.18 -3.2 691,072 + DDA3937_RS03135 0.18 +0.0 691,165 - DDA3937_RS03135 0.30 -1.6 691,235 + DDA3937_RS03135 0.39 -1.7 691,235 + DDA3937_RS03135 0.39 -1.6 691,235 + DDA3937_RS03135 0.39 -1.3 691,235 + DDA3937_RS03135 0.39 -1.2 691,235 + DDA3937_RS03135 0.39 -1.0 691,235 + DDA3937_RS03135 0.39 -2.6 691,235 + DDA3937_RS03135 0.39 -0.5 691,235 + DDA3937_RS03135 0.39 -0.7 691,236 - DDA3937_RS03135 0.39 +0.3 691,236 - DDA3937_RS03135 0.39 -3.5 691,236 - DDA3937_RS03135 0.39 -0.4 691,236 - DDA3937_RS03135 0.39 -1.6 691,236 - DDA3937_RS03135 0.39 +0.3 691,344 + DDA3937_RS03135 0.53 +1.6 691,344 + DDA3937_RS03135 0.53 -1.1 691,402 - DDA3937_RS03135 0.61 -1.0 691,527 + DDA3937_RS03135 0.77 -3.4 691,571 - DDA3937_RS03135 0.82 -0.1 691,591 - DDA3937_RS03135 0.85 -3.5 691,665 + +0.2 691,752 + -1.4 691,920 - DDA3937_RS03140 0.11 +3.2 691,920 - DDA3937_RS03140 0.11 -3.4 692,091 + DDA3937_RS03140 0.24 -0.1 692,171 + DDA3937_RS03140 0.30 -2.1 692,172 - DDA3937_RS03140 0.30 +0.9 692,272 - DDA3937_RS03140 0.38 -0.1 692,272 - DDA3937_RS03140 0.38 -1.7 692,400 - DDA3937_RS03140 0.47 -0.5 692,409 + DDA3937_RS03140 0.48 -0.7 692,409 + DDA3937_RS03140 0.48 +2.8 692,410 - DDA3937_RS03140 0.48 -1.0 692,410 - DDA3937_RS03140 0.48 -2.4 692,410 - DDA3937_RS03140 0.48 -1.9 692,453 + DDA3937_RS03140 0.51 -2.5 692,453 + DDA3937_RS03140 0.51 +0.6 692,453 + DDA3937_RS03140 0.51 +0.8 692,454 - DDA3937_RS03140 0.51 +0.6 692,454 - DDA3937_RS03140 0.51 -1.4 692,454 - DDA3937_RS03140 0.51 -2.1 692,454 - DDA3937_RS03140 0.51 -1.2 692,454 - DDA3937_RS03140 0.51 -0.3 692,454 - DDA3937_RS03140 0.51 +0.4 692,454 - DDA3937_RS03140 0.51 +2.8 692,456 + DDA3937_RS03140 0.52 +0.2 692,457 - DDA3937_RS03140 0.52 -0.2 692,536 + DDA3937_RS03140 0.58 -1.0 692,537 - DDA3937_RS03140 0.58 -2.3
Or see this region's nucleotide sequence