Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03100 and DDA3937_RS03105 are separated by 65 nucleotides DDA3937_RS03105 and DDA3937_RS03110 are separated by 117 nucleotides
DDA3937_RS03100: DDA3937_RS03100 - DEAD/DEAH family ATP-dependent RNA helicase, at 683,817 to 685,712
_RS03100
DDA3937_RS03105: DDA3937_RS03105 - LLM class flavin-dependent oxidoreductase, at 685,778 to 686,797
_RS03105
DDA3937_RS03110: DDA3937_RS03110 - U32 family peptidase, at 686,915 to 687,793
_RS03110
Position (kb) 685
686
687 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 685.023 kb on + strand, within DDA3937_RS03100 at 685.024 kb on - strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.333 kb on + strand, within DDA3937_RS03100 at 685.347 kb on - strand, within DDA3937_RS03100 at 685.611 kb on - strand at 685.774 kb on + strand at 685.862 kb on + strand at 686.063 kb on - strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.145 kb on + strand, within DDA3937_RS03105 at 686.145 kb on + strand, within DDA3937_RS03105 at 686.146 kb on - strand, within DDA3937_RS03105 at 686.146 kb on - strand at 686.146 kb on - strand, within DDA3937_RS03105 at 686.146 kb on - strand at 686.212 kb on + strand, within DDA3937_RS03105 at 686.212 kb on + strand, within DDA3937_RS03105 at 686.277 kb on + strand, within DDA3937_RS03105 at 686.278 kb on - strand, within DDA3937_RS03105 at 686.337 kb on - strand, within DDA3937_RS03105 at 686.384 kb on + strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.485 kb on + strand, within DDA3937_RS03105 at 686.581 kb on + strand, within DDA3937_RS03105 at 686.604 kb on + strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.623 kb on + strand, within DDA3937_RS03105 at 686.623 kb on + strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.797 kb on + strand at 686.797 kb on + strand at 686.798 kb on - strand at 686.798 kb on - strand at 686.798 kb on - strand at 686.798 kb on - strand at 686.811 kb on + strand at 686.811 kb on + strand at 686.811 kb on + strand at 686.811 kb on + strand at 686.812 kb on - strand at 686.812 kb on - strand at 686.812 kb on - strand at 686.860 kb on + strand at 686.865 kb on + strand at 686.865 kb on + strand at 686.865 kb on + strand at 686.866 kb on - strand at 686.866 kb on - strand at 686.917 kb on - strand at 686.917 kb on - strand at 687.109 kb on + strand at 687.111 kb on + strand, within DDA3937_RS03110 at 687.112 kb on - strand at 687.112 kb on - strand, within DDA3937_RS03110 at 687.112 kb on - strand, within DDA3937_RS03110 at 687.112 kb on - strand, within DDA3937_RS03110 at 687.118 kb on - strand, within DDA3937_RS03110 at 687.195 kb on + strand, within DDA3937_RS03110 at 687.288 kb on + strand, within DDA3937_RS03110 at 687.288 kb on + strand, within DDA3937_RS03110 at 687.288 kb on + strand, within DDA3937_RS03110 at 687.288 kb on + strand, within DDA3937_RS03110 at 687.289 kb on - strand, within DDA3937_RS03110 at 687.344 kb on - strand, within DDA3937_RS03110 at 687.344 kb on - strand, within DDA3937_RS03110 at 687.385 kb on + strand, within DDA3937_RS03110 at 687.385 kb on + strand, within DDA3937_RS03110 at 687.386 kb on - strand, within DDA3937_RS03110 at 687.386 kb on - strand, within DDA3937_RS03110 at 687.386 kb on - strand, within DDA3937_RS03110 at 687.429 kb on + strand, within DDA3937_RS03110 at 687.429 kb on + strand, within DDA3937_RS03110 at 687.430 kb on - strand, within DDA3937_RS03110 at 687.430 kb on - strand, within DDA3937_RS03110 at 687.436 kb on + strand, within DDA3937_RS03110 at 687.436 kb on + strand, within DDA3937_RS03110 at 687.437 kb on - strand, within DDA3937_RS03110 at 687.437 kb on - strand, within DDA3937_RS03110 at 687.437 kb on - strand, within DDA3937_RS03110 at 687.438 kb on + strand, within DDA3937_RS03110 at 687.438 kb on + strand, within DDA3937_RS03110 at 687.439 kb on - strand, within DDA3937_RS03110 at 687.439 kb on - strand, within DDA3937_RS03110 at 687.439 kb on - strand, within DDA3937_RS03110 at 687.543 kb on + strand, within DDA3937_RS03110 at 687.543 kb on + strand, within DDA3937_RS03110 at 687.697 kb on - strand, within DDA3937_RS03110 at 687.732 kb on + strand at 687.733 kb on - strand at 687.762 kb on + strand at 687.763 kb on - strand at 687.763 kb on - strand at 687.763 kb on - strand at 687.765 kb on + strand at 687.765 kb on + strand at 687.765 kb on + strand at 687.765 kb on + strand at 687.766 kb on - strand at 687.766 kb on - strand at 687.786 kb on + strand at 687.786 kb on + strand at 687.786 kb on + strand at 687.787 kb on - strand at 687.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 685,023 + DDA3937_RS03100 0.64 -0.3 685,024 - DDA3937_RS03100 0.64 -0.5 685,211 + DDA3937_RS03100 0.74 -0.7 685,211 + DDA3937_RS03100 0.74 +1.4 685,211 + DDA3937_RS03100 0.74 -0.4 685,333 + DDA3937_RS03100 0.80 +2.0 685,347 - DDA3937_RS03100 0.81 +0.0 685,611 - -2.1 685,774 + -1.6 685,862 + -2.0 686,063 - DDA3937_RS03105 0.28 +1.4 686,135 + DDA3937_RS03105 0.35 +1.1 686,135 + DDA3937_RS03105 0.35 +1.4 686,135 + DDA3937_RS03105 0.35 -0.3 686,136 - DDA3937_RS03105 0.35 -0.8 686,136 - DDA3937_RS03105 0.35 -1.3 686,136 - DDA3937_RS03105 0.35 +0.2 686,136 - DDA3937_RS03105 0.35 -0.2 686,136 - DDA3937_RS03105 0.35 -2.3 686,136 - DDA3937_RS03105 0.35 -0.3 686,145 + DDA3937_RS03105 0.36 +0.8 686,145 + DDA3937_RS03105 0.36 -4.4 686,146 - DDA3937_RS03105 0.36 +2.3 686,146 - +3.5 686,146 - DDA3937_RS03105 0.36 +2.6 686,146 - +1.6 686,212 + DDA3937_RS03105 0.43 +0.8 686,212 + DDA3937_RS03105 0.43 -1.3 686,277 + DDA3937_RS03105 0.49 -3.0 686,278 - DDA3937_RS03105 0.49 -0.1 686,337 - DDA3937_RS03105 0.55 +0.2 686,384 + DDA3937_RS03105 0.59 -0.4 686,385 - DDA3937_RS03105 0.60 -0.7 686,385 - DDA3937_RS03105 0.60 -2.3 686,385 - DDA3937_RS03105 0.60 -0.3 686,485 + DDA3937_RS03105 0.69 +0.1 686,581 + DDA3937_RS03105 0.79 -3.5 686,604 + DDA3937_RS03105 0.81 +0.9 686,605 - DDA3937_RS03105 0.81 -3.2 686,605 - DDA3937_RS03105 0.81 -1.6 686,605 - DDA3937_RS03105 0.81 +1.6 686,623 + DDA3937_RS03105 0.83 +0.4 686,623 + DDA3937_RS03105 0.83 -1.9 686,624 - DDA3937_RS03105 0.83 -3.0 686,624 - DDA3937_RS03105 0.83 -0.5 686,624 - DDA3937_RS03105 0.83 -2.3 686,624 - DDA3937_RS03105 0.83 -2.8 686,624 - DDA3937_RS03105 0.83 +1.3 686,624 - DDA3937_RS03105 0.83 +1.7 686,797 + -3.4 686,797 + -0.4 686,798 - +1.6 686,798 - +0.0 686,798 - -1.9 686,798 - -1.6 686,811 + +2.2 686,811 + +1.4 686,811 + +1.1 686,811 + -1.9 686,812 - -2.9 686,812 - -1.1 686,812 - -1.4 686,860 + -1.9 686,865 + -1.2 686,865 + -3.3 686,865 + -0.1 686,866 - +1.9 686,866 - -0.8 686,917 - -1.0 686,917 - +2.1 687,109 + +3.2 687,111 + DDA3937_RS03110 0.22 +1.1 687,112 - +3.0 687,112 - DDA3937_RS03110 0.22 -1.9 687,112 - DDA3937_RS03110 0.22 +2.3 687,112 - DDA3937_RS03110 0.22 -1.4 687,118 - DDA3937_RS03110 0.23 +0.8 687,195 + DDA3937_RS03110 0.32 -2.7 687,288 + DDA3937_RS03110 0.42 -1.7 687,288 + DDA3937_RS03110 0.42 +1.0 687,288 + DDA3937_RS03110 0.42 -1.4 687,288 + DDA3937_RS03110 0.42 +0.5 687,289 - DDA3937_RS03110 0.43 -1.3 687,344 - DDA3937_RS03110 0.49 -0.5 687,344 - DDA3937_RS03110 0.49 +3.3 687,385 + DDA3937_RS03110 0.53 +0.5 687,385 + DDA3937_RS03110 0.53 -1.0 687,386 - DDA3937_RS03110 0.54 -3.0 687,386 - DDA3937_RS03110 0.54 -1.6 687,386 - DDA3937_RS03110 0.54 -1.2 687,429 + DDA3937_RS03110 0.58 +1.7 687,429 + DDA3937_RS03110 0.58 -1.9 687,430 - DDA3937_RS03110 0.59 -1.7 687,430 - DDA3937_RS03110 0.59 -4.0 687,436 + DDA3937_RS03110 0.59 +2.7 687,436 + DDA3937_RS03110 0.59 +2.1 687,437 - DDA3937_RS03110 0.59 -2.6 687,437 - DDA3937_RS03110 0.59 +0.1 687,437 - DDA3937_RS03110 0.59 -2.8 687,438 + DDA3937_RS03110 0.59 -0.6 687,438 + DDA3937_RS03110 0.59 -4.4 687,439 - DDA3937_RS03110 0.60 -0.1 687,439 - DDA3937_RS03110 0.60 +0.9 687,439 - DDA3937_RS03110 0.60 -2.9 687,543 + DDA3937_RS03110 0.71 -1.0 687,543 + DDA3937_RS03110 0.71 -0.0 687,697 - DDA3937_RS03110 0.89 -0.2 687,732 + -1.0 687,733 - -1.6 687,762 + -0.2 687,763 - -3.0 687,763 - -0.6 687,763 - +0.4 687,765 + -0.4 687,765 + +1.0 687,765 + +1.5 687,765 + -1.9 687,766 - +0.0 687,766 - -1.6 687,786 + -2.7 687,786 + -0.7 687,786 + -2.6 687,787 - -2.3 687,787 - -1.7
Or see this region's nucleotide sequence