Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03005 and DDA3937_RS03010 are separated by 105 nucleotides DDA3937_RS03010 and DDA3937_RS03015 are separated by 265 nucleotides DDA3937_RS03015 and DDA3937_RS03020 are separated by 125 nucleotides
DDA3937_RS03005: DDA3937_RS03005 - Obg family GTPase CgtA, at 663,648 to 664,823
_RS03005
DDA3937_RS03010: DDA3937_RS03010 - serine-type D-Ala-D-Ala carboxypeptidase, at 664,929 to 666,362
_RS03010
DDA3937_RS03015: DDA3937_RS03015 - transcription elongation factor GreA, at 666,628 to 667,104
_RS03015
DDA3937_RS03020: DDA3937_RS03020 - ribosome assembly RNA-binding protein YhbY, at 667,230 to 667,523
_RS03020
Position (kb) 664
665
666
667 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 664.813 kb on - strand at 664.821 kb on + strand at 664.872 kb on + strand at 664.873 kb on - strand at 664.883 kb on - strand at 664.907 kb on - strand at 664.942 kb on + strand at 664.942 kb on + strand at 664.942 kb on + strand at 664.942 kb on + strand at 664.942 kb on + strand at 664.942 kb on + strand at 664.943 kb on - strand at 664.943 kb on - strand at 664.943 kb on - strand at 664.943 kb on - strand at 664.944 kb on + strand at 664.944 kb on + strand at 664.945 kb on - strand at 664.945 kb on - strand at 664.945 kb on - strand at 664.945 kb on - strand at 664.945 kb on - strand at 664.955 kb on - strand at 664.955 kb on - strand at 665.032 kb on + strand at 665.033 kb on - strand at 665.072 kb on + strand at 665.072 kb on + strand at 665.089 kb on + strand, within DDA3937_RS03010 at 665.089 kb on + strand, within DDA3937_RS03010 at 665.089 kb on + strand, within DDA3937_RS03010 at 665.089 kb on + strand, within DDA3937_RS03010 at 665.089 kb on + strand, within DDA3937_RS03010 at 665.090 kb on - strand, within DDA3937_RS03010 at 665.090 kb on - strand, within DDA3937_RS03010 at 665.090 kb on - strand, within DDA3937_RS03010 at 665.090 kb on - strand, within DDA3937_RS03010 at 665.090 kb on - strand, within DDA3937_RS03010 at 665.090 kb on - strand, within DDA3937_RS03010 at 665.090 kb on - strand, within DDA3937_RS03010 at 665.091 kb on + strand, within DDA3937_RS03010 at 665.092 kb on - strand, within DDA3937_RS03010 at 665.166 kb on + strand, within DDA3937_RS03010 at 665.166 kb on + strand, within DDA3937_RS03010 at 665.166 kb on + strand, within DDA3937_RS03010 at 665.167 kb on - strand, within DDA3937_RS03010 at 665.207 kb on - strand, within DDA3937_RS03010 at 665.234 kb on + strand, within DDA3937_RS03010 at 665.236 kb on + strand, within DDA3937_RS03010 at 665.236 kb on + strand, within DDA3937_RS03010 at 665.237 kb on - strand, within DDA3937_RS03010 at 665.276 kb on + strand, within DDA3937_RS03010 at 665.276 kb on + strand, within DDA3937_RS03010 at 665.276 kb on + strand, within DDA3937_RS03010 at 665.277 kb on - strand, within DDA3937_RS03010 at 665.277 kb on - strand, within DDA3937_RS03010 at 665.277 kb on - strand, within DDA3937_RS03010 at 665.421 kb on + strand, within DDA3937_RS03010 at 665.422 kb on - strand, within DDA3937_RS03010 at 665.469 kb on + strand, within DDA3937_RS03010 at 665.469 kb on + strand, within DDA3937_RS03010 at 665.470 kb on - strand, within DDA3937_RS03010 at 665.602 kb on + strand, within DDA3937_RS03010 at 665.602 kb on + strand, within DDA3937_RS03010 at 665.603 kb on - strand, within DDA3937_RS03010 at 665.619 kb on + strand, within DDA3937_RS03010 at 665.670 kb on - strand, within DDA3937_RS03010 at 665.716 kb on + strand, within DDA3937_RS03010 at 665.779 kb on + strand, within DDA3937_RS03010 at 665.779 kb on + strand, within DDA3937_RS03010 at 665.825 kb on + strand, within DDA3937_RS03010 at 665.827 kb on + strand, within DDA3937_RS03010 at 665.827 kb on + strand, within DDA3937_RS03010 at 665.828 kb on - strand, within DDA3937_RS03010 at 665.828 kb on - strand, within DDA3937_RS03010 at 666.015 kb on + strand, within DDA3937_RS03010 at 666.016 kb on - strand, within DDA3937_RS03010 at 666.016 kb on - strand, within DDA3937_RS03010 at 666.016 kb on - strand, within DDA3937_RS03010 at 666.030 kb on + strand, within DDA3937_RS03010 at 666.031 kb on - strand, within DDA3937_RS03010 at 666.073 kb on - strand, within DDA3937_RS03010 at 666.141 kb on + strand, within DDA3937_RS03010 at 666.141 kb on + strand, within DDA3937_RS03010 at 666.161 kb on + strand, within DDA3937_RS03010 at 666.209 kb on - strand, within DDA3937_RS03010 at 666.224 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.278 kb on - strand at 666.278 kb on - strand at 666.278 kb on - strand at 666.286 kb on + strand at 666.286 kb on + strand at 666.286 kb on + strand at 666.286 kb on + strand at 666.287 kb on - strand at 666.287 kb on - strand at 666.287 kb on - strand at 666.324 kb on + strand at 666.324 kb on + strand at 666.325 kb on - strand at 666.325 kb on - strand at 666.325 kb on - strand at 666.325 kb on - strand at 666.325 kb on - strand at 666.329 kb on - strand at 666.372 kb on + strand at 666.372 kb on + strand at 666.373 kb on - strand at 666.373 kb on - strand at 666.376 kb on + strand at 666.376 kb on + strand at 666.376 kb on + strand at 666.377 kb on - strand at 666.377 kb on - strand at 666.377 kb on - strand at 666.397 kb on + strand at 666.397 kb on + strand at 666.398 kb on - strand at 666.398 kb on - strand at 666.400 kb on + strand at 666.400 kb on + strand at 666.401 kb on - strand at 666.423 kb on - strand at 666.451 kb on + strand at 666.452 kb on - strand at 666.511 kb on + strand at 666.521 kb on + strand at 666.569 kb on + strand at 666.611 kb on + strand at 666.617 kb on + strand at 666.617 kb on + strand at 666.627 kb on + strand at 666.715 kb on - strand, within DDA3937_RS03015 at 666.941 kb on - strand at 667.096 kb on + strand at 667.097 kb on - strand at 667.110 kb on - strand at 667.270 kb on + strand, within DDA3937_RS03020 at 667.270 kb on + strand, within DDA3937_RS03020 at 667.270 kb on + strand, within DDA3937_RS03020 at 667.270 kb on + strand, within DDA3937_RS03020
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 664,813 - -2.5 664,821 + -1.9 664,872 + -0.4 664,873 - -1.3 664,883 - +0.0 664,907 - -1.4 664,942 + +1.3 664,942 + -1.6 664,942 + -2.1 664,942 + -3.8 664,942 + +0.4 664,942 + -1.5 664,943 - +0.2 664,943 - +2.9 664,943 - -2.0 664,943 - -1.7 664,944 + -2.0 664,944 + -1.6 664,945 - -2.9 664,945 - -3.1 664,945 - +0.4 664,945 - -1.8 664,945 - +1.6 664,955 - +1.5 664,955 - -0.6 665,032 + -1.6 665,033 - +0.4 665,072 + +0.1 665,072 + -1.1 665,089 + DDA3937_RS03010 0.11 +1.0 665,089 + DDA3937_RS03010 0.11 -1.7 665,089 + DDA3937_RS03010 0.11 -2.7 665,089 + DDA3937_RS03010 0.11 -3.2 665,089 + DDA3937_RS03010 0.11 -1.4 665,090 - DDA3937_RS03010 0.11 -1.6 665,090 - DDA3937_RS03010 0.11 -1.6 665,090 - DDA3937_RS03010 0.11 -3.9 665,090 - DDA3937_RS03010 0.11 -1.4 665,090 - DDA3937_RS03010 0.11 +1.1 665,090 - DDA3937_RS03010 0.11 -2.7 665,090 - DDA3937_RS03010 0.11 +3.2 665,091 + DDA3937_RS03010 0.11 +1.8 665,092 - DDA3937_RS03010 0.11 -1.5 665,166 + DDA3937_RS03010 0.17 -2.9 665,166 + DDA3937_RS03010 0.17 +0.5 665,166 + DDA3937_RS03010 0.17 +0.4 665,167 - DDA3937_RS03010 0.17 -1.0 665,207 - DDA3937_RS03010 0.19 -3.3 665,234 + DDA3937_RS03010 0.21 -1.4 665,236 + DDA3937_RS03010 0.21 -0.0 665,236 + DDA3937_RS03010 0.21 -1.8 665,237 - DDA3937_RS03010 0.21 +0.3 665,276 + DDA3937_RS03010 0.24 +0.3 665,276 + DDA3937_RS03010 0.24 +0.6 665,276 + DDA3937_RS03010 0.24 -1.2 665,277 - DDA3937_RS03010 0.24 -2.0 665,277 - DDA3937_RS03010 0.24 -0.4 665,277 - DDA3937_RS03010 0.24 -1.8 665,421 + DDA3937_RS03010 0.34 +1.5 665,422 - DDA3937_RS03010 0.34 -0.4 665,469 + DDA3937_RS03010 0.38 +0.2 665,469 + DDA3937_RS03010 0.38 +1.3 665,470 - DDA3937_RS03010 0.38 -1.0 665,602 + DDA3937_RS03010 0.47 -2.6 665,602 + DDA3937_RS03010 0.47 -2.3 665,603 - DDA3937_RS03010 0.47 -1.8 665,619 + DDA3937_RS03010 0.48 +1.7 665,670 - DDA3937_RS03010 0.52 +0.7 665,716 + DDA3937_RS03010 0.55 +2.9 665,779 + DDA3937_RS03010 0.59 +1.9 665,779 + DDA3937_RS03010 0.59 +1.5 665,825 + DDA3937_RS03010 0.62 +0.7 665,827 + DDA3937_RS03010 0.63 +1.3 665,827 + DDA3937_RS03010 0.63 +2.8 665,828 - DDA3937_RS03010 0.63 +0.9 665,828 - DDA3937_RS03010 0.63 -2.5 666,015 + DDA3937_RS03010 0.76 +2.2 666,016 - DDA3937_RS03010 0.76 -0.4 666,016 - DDA3937_RS03010 0.76 -0.4 666,016 - DDA3937_RS03010 0.76 -2.1 666,030 + DDA3937_RS03010 0.77 -1.0 666,031 - DDA3937_RS03010 0.77 +0.1 666,073 - DDA3937_RS03010 0.80 -0.4 666,141 + DDA3937_RS03010 0.85 +1.6 666,141 + DDA3937_RS03010 0.85 -2.2 666,161 + DDA3937_RS03010 0.86 -3.1 666,209 - DDA3937_RS03010 0.89 +2.1 666,224 + -1.8 666,277 + +0.2 666,277 + +0.7 666,277 + +0.2 666,277 + +0.7 666,277 + +0.4 666,277 + +0.3 666,277 + -1.7 666,278 - -4.2 666,278 - -1.6 666,278 - +2.5 666,286 + -0.7 666,286 + +1.7 666,286 + +0.6 666,286 + -0.3 666,287 - -1.6 666,287 - +0.4 666,287 - -0.6 666,324 + +0.5 666,324 + -2.7 666,325 - -1.0 666,325 - -1.2 666,325 - +1.0 666,325 - -1.1 666,325 - -2.6 666,329 - -0.6 666,372 + +2.0 666,372 + -2.6 666,373 - -1.0 666,373 - +0.0 666,376 + +0.9 666,376 + -1.9 666,376 + +0.2 666,377 - -2.6 666,377 - -1.1 666,377 - -2.5 666,397 + -0.6 666,397 + -0.6 666,398 - -1.3 666,398 - +1.5 666,400 + -1.5 666,400 + +3.2 666,401 - -3.6 666,423 - +0.4 666,451 + +0.2 666,452 - -0.2 666,511 + +1.0 666,521 + -1.7 666,569 + +0.8 666,611 + -0.4 666,617 + -0.7 666,617 + -0.4 666,627 + -0.4 666,715 - DDA3937_RS03015 0.18 -1.6 666,941 - +0.0 667,096 + -3.6 667,097 - -1.0 667,110 - -3.4 667,270 + DDA3937_RS03020 0.14 -2.3 667,270 + DDA3937_RS03020 0.14 +1.4 667,270 + DDA3937_RS03020 0.14 +0.9 667,270 + DDA3937_RS03020 0.14 +0.1
Or see this region's nucleotide sequence