Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02550

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02545 and DDA3937_RS02550 are separated by 0 nucleotidesDDA3937_RS02550 and DDA3937_RS02555 are separated by 16 nucleotides DDA3937_RS02545: DDA3937_RS02545 - heavy metal translocating P-type ATPase, at 561,977 to 564,415 _RS02545 DDA3937_RS02550: DDA3937_RS02550 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 564,416 to 564,847 _RS02550 DDA3937_RS02555: DDA3937_RS02555 - LacI family DNA-binding transcriptional regulator, at 564,864 to 565,886 _RS02555 Position (kb) 564 565Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 563.434 kb on + strandat 563.435 kb on - strand, within DDA3937_RS02545at 563.435 kb on - strand, within DDA3937_RS02545at 563.435 kb on - strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.520 kb on - strand, within DDA3937_RS02545at 563.611 kb on + strand, within DDA3937_RS02545at 563.612 kb on - strand, within DDA3937_RS02545at 563.893 kb on + strand, within DDA3937_RS02545at 563.893 kb on + strand, within DDA3937_RS02545at 563.893 kb on + strand, within DDA3937_RS02545at 563.894 kb on - strand, within DDA3937_RS02545at 564.104 kb on - strand, within DDA3937_RS02545at 564.104 kb on - strand, within DDA3937_RS02545at 564.374 kb on + strandat 564.375 kb on - strandat 564.375 kb on - strandat 564.378 kb on - strandat 564.388 kb on + strandat 564.389 kb on - strandat 564.489 kb on + strand, within DDA3937_RS02550at 564.489 kb on + strand, within DDA3937_RS02550at 564.522 kb on - strand, within DDA3937_RS02550at 564.522 kb on - strand, within DDA3937_RS02550at 564.530 kb on + strand, within DDA3937_RS02550at 564.530 kb on + strand, within DDA3937_RS02550at 564.531 kb on - strand, within DDA3937_RS02550at 564.531 kb on - strand, within DDA3937_RS02550at 564.531 kb on - strand, within DDA3937_RS02550at 564.533 kb on + strand, within DDA3937_RS02550at 564.533 kb on + strand, within DDA3937_RS02550at 564.534 kb on - strand, within DDA3937_RS02550at 564.568 kb on + strand, within DDA3937_RS02550at 564.569 kb on - strand, within DDA3937_RS02550at 564.569 kb on - strand, within DDA3937_RS02550at 564.832 kb on + strandat 564.885 kb on - strandat 564.923 kb on + strandat 564.923 kb on + strandat 564.948 kb on + strandat 564.949 kb on - strandat 565.168 kb on - strand, within DDA3937_RS02555at 565.168 kb on - strand, within DDA3937_RS02555at 565.334 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strandat 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.455 kb on - strand, within DDA3937_RS02555at 565.710 kb on - strand, within DDA3937_RS02555at 565.710 kb on - strand, within DDA3937_RS02555at 565.711 kb on + strand, within DDA3937_RS02555at 565.711 kb on + strand, within DDA3937_RS02555at 565.711 kb on + strand, within DDA3937_RS02555at 565.712 kb on - strand, within DDA3937_RS02555

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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563,434 + -1.4
563,435 - DDA3937_RS02545 0.60 -1.4
563,435 - DDA3937_RS02545 0.60 -3.0
563,435 - DDA3937_RS02545 0.60 -2.3
563,519 + DDA3937_RS02545 0.63 -3.8
563,519 + DDA3937_RS02545 0.63 -3.1
563,519 + DDA3937_RS02545 0.63 -3.2
563,519 + DDA3937_RS02545 0.63 -4.3
563,519 + DDA3937_RS02545 0.63 -1.2
563,520 - DDA3937_RS02545 0.63 -1.6
563,611 + DDA3937_RS02545 0.67 -0.3
563,612 - DDA3937_RS02545 0.67 -5.1
563,893 + DDA3937_RS02545 0.79 -4.1
563,893 + DDA3937_RS02545 0.79 -1.7
563,893 + DDA3937_RS02545 0.79 -2.3
563,894 - DDA3937_RS02545 0.79 -4.7
564,104 - DDA3937_RS02545 0.87 -3.5
564,104 - DDA3937_RS02545 0.87 -1.4
564,374 + -5.0
564,375 - -2.4
564,375 - -2.6
564,378 - -2.0
564,388 + -2.1
564,389 - +0.7
564,489 + DDA3937_RS02550 0.17 -0.7
564,489 + DDA3937_RS02550 0.17 -3.0
564,522 - DDA3937_RS02550 0.25 -0.7
564,522 - DDA3937_RS02550 0.25 -3.5
564,530 + DDA3937_RS02550 0.26 -2.2
564,530 + DDA3937_RS02550 0.26 -1.7
564,531 - DDA3937_RS02550 0.27 -2.9
564,531 - DDA3937_RS02550 0.27 -0.4
564,531 - DDA3937_RS02550 0.27 +0.6
564,533 + DDA3937_RS02550 0.27 -2.4
564,533 + DDA3937_RS02550 0.27 -0.9
564,534 - DDA3937_RS02550 0.27 +0.0
564,568 + DDA3937_RS02550 0.35 -3.8
564,569 - DDA3937_RS02550 0.35 -1.2
564,569 - DDA3937_RS02550 0.35 -2.9
564,832 + -2.0
564,885 - -4.4
564,923 + +0.0
564,923 + -1.2
564,948 + +1.5
564,949 - -2.9
565,168 - DDA3937_RS02555 0.30 +0.8
565,168 - DDA3937_RS02555 0.30 +1.2
565,334 + DDA3937_RS02555 0.46 +0.2
565,336 + DDA3937_RS02555 0.46 -0.7
565,336 + DDA3937_RS02555 0.46 -2.0
565,336 + DDA3937_RS02555 0.46 +1.8
565,336 + DDA3937_RS02555 0.46 -2.0
565,336 + DDA3937_RS02555 0.46 +1.5
565,336 + DDA3937_RS02555 0.46 -2.1
565,336 + DDA3937_RS02555 0.46 +0.2
565,336 + +3.0
565,336 + DDA3937_RS02555 0.46 -2.4
565,336 + DDA3937_RS02555 0.46 -3.1
565,336 + DDA3937_RS02555 0.46 +1.9
565,336 + DDA3937_RS02555 0.46 -1.2
565,337 - DDA3937_RS02555 0.46 +1.4
565,337 - DDA3937_RS02555 0.46 +0.6
565,337 - DDA3937_RS02555 0.46 -1.0
565,337 - DDA3937_RS02555 0.46 +1.0
565,337 - DDA3937_RS02555 0.46 -1.0
565,337 - DDA3937_RS02555 0.46 -2.7
565,337 - DDA3937_RS02555 0.46 -0.4
565,337 - DDA3937_RS02555 0.46 -2.3
565,455 - DDA3937_RS02555 0.58 +1.1
565,710 - DDA3937_RS02555 0.83 -2.6
565,710 - DDA3937_RS02555 0.83 -2.2
565,711 + DDA3937_RS02555 0.83 -0.2
565,711 + DDA3937_RS02555 0.83 +2.3
565,711 + DDA3937_RS02555 0.83 -2.7
565,712 - DDA3937_RS02555 0.83 +0.3

Or see this region's nucleotide sequence