Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02465

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02460 and DDA3937_RS02465 are separated by 284 nucleotidesDDA3937_RS02465 and DDA3937_RS02470 are separated by 41 nucleotides DDA3937_RS02460: DDA3937_RS02460 - TatD family hydrolase, at 544,411 to 545,253 _RS02460 DDA3937_RS02465: DDA3937_RS02465 - 4'-phosphopantetheinyl transferase superfamily protein, at 545,538 to 546,257 _RS02465 DDA3937_RS02470: DDA3937_RS02470 - SDR family NAD(P)-dependent oxidoreductase, at 546,299 to 547,063 _RS02470 Position (kb) 545 546 547Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 544.624 kb on + strand, within DDA3937_RS02460at 544.651 kb on + strand, within DDA3937_RS02460at 544.651 kb on + strand, within DDA3937_RS02460at 544.651 kb on + strand, within DDA3937_RS02460at 544.652 kb on - strand, within DDA3937_RS02460at 544.753 kb on + strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.807 kb on - strand, within DDA3937_RS02460at 544.877 kb on + strand, within DDA3937_RS02460at 544.878 kb on - strand, within DDA3937_RS02460at 544.934 kb on - strand, within DDA3937_RS02460at 544.934 kb on - strand, within DDA3937_RS02460at 544.966 kb on + strand, within DDA3937_RS02460at 544.967 kb on - strand, within DDA3937_RS02460at 544.967 kb on - strand, within DDA3937_RS02460at 544.969 kb on + strand, within DDA3937_RS02460at 544.969 kb on + strand, within DDA3937_RS02460at 544.970 kb on - strand, within DDA3937_RS02460at 544.970 kb on - strand, within DDA3937_RS02460at 544.997 kb on - strand, within DDA3937_RS02460at 545.121 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.125 kb on - strand, within DDA3937_RS02460at 545.125 kb on - strand, within DDA3937_RS02460at 545.125 kb on - strand, within DDA3937_RS02460at 545.271 kb on + strandat 545.305 kb on - strandat 545.305 kb on - strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.308 kb on - strandat 545.317 kb on + strandat 545.317 kb on + strandat 545.318 kb on - strandat 545.340 kb on - strandat 545.425 kb on - strandat 545.456 kb on - strandat 545.471 kb on + strandat 545.472 kb on - strandat 545.481 kb on + strandat 545.481 kb on + strandat 545.482 kb on - strandat 545.482 kb on - strandat 545.559 kb on - strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.605 kb on - strandat 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.832 kb on - strand, within DDA3937_RS02465at 545.952 kb on - strand, within DDA3937_RS02465at 545.952 kb on - strand, within DDA3937_RS02465at 545.986 kb on - strand, within DDA3937_RS02465at 545.986 kb on - strand, within DDA3937_RS02465at 546.026 kb on + strand, within DDA3937_RS02465at 546.027 kb on - strand, within DDA3937_RS02465at 546.064 kb on - strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.076 kb on - strand, within DDA3937_RS02465at 546.213 kb on + strandat 546.213 kb on + strandat 546.214 kb on - strandat 546.214 kb on - strandat 546.214 kb on - strandat 546.321 kb on + strandat 546.321 kb on + strandat 546.550 kb on + strand, within DDA3937_RS02470at 546.746 kb on + strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.776 kb on + strandat 546.776 kb on + strand, within DDA3937_RS02470at 546.776 kb on + strand, within DDA3937_RS02470at 546.776 kb on + strand, within DDA3937_RS02470at 546.777 kb on - strand, within DDA3937_RS02470at 546.833 kb on - strand, within DDA3937_RS02470at 546.833 kb on - strand, within DDA3937_RS02470at 546.907 kb on + strand, within DDA3937_RS02470at 546.908 kb on - strand, within DDA3937_RS02470at 547.007 kb on + strandat 547.058 kb on - strandat 547.061 kb on + strandat 547.061 kb on + strandat 547.061 kb on + strandat 547.061 kb on + strandat 547.062 kb on - strandat 547.062 kb on - strandat 547.062 kb on - strandat 547.101 kb on + strandat 547.101 kb on + strandat 547.102 kb on - strandat 547.144 kb on + strandat 547.144 kb on + strandat 547.145 kb on - strandat 547.147 kb on + strandat 547.148 kb on - strandat 547.167 kb on - strandat 547.167 kb on - strandat 547.213 kb on - strandat 547.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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544,624 + DDA3937_RS02460 0.25 -0.3
544,651 + DDA3937_RS02460 0.28 -0.7
544,651 + DDA3937_RS02460 0.28 -2.0
544,651 + DDA3937_RS02460 0.28 -0.9
544,652 - DDA3937_RS02460 0.29 +0.5
544,753 + DDA3937_RS02460 0.41 -1.2
544,754 - DDA3937_RS02460 0.41 -3.5
544,754 - DDA3937_RS02460 0.41 -3.3
544,754 - DDA3937_RS02460 0.41 -2.2
544,754 - DDA3937_RS02460 0.41 -1.0
544,754 - DDA3937_RS02460 0.41 -2.0
544,807 - DDA3937_RS02460 0.47 -0.2
544,877 + DDA3937_RS02460 0.55 +1.1
544,878 - DDA3937_RS02460 0.55 +0.1
544,934 - DDA3937_RS02460 0.62 +0.8
544,934 - DDA3937_RS02460 0.62 +0.5
544,966 + DDA3937_RS02460 0.66 -0.1
544,967 - DDA3937_RS02460 0.66 +1.5
544,967 - DDA3937_RS02460 0.66 +0.4
544,969 + DDA3937_RS02460 0.66 +1.7
544,969 + DDA3937_RS02460 0.66 +2.4
544,970 - DDA3937_RS02460 0.66 -0.7
544,970 - DDA3937_RS02460 0.66 -0.3
544,997 - DDA3937_RS02460 0.70 +3.8
545,121 + DDA3937_RS02460 0.84 -2.5
545,124 + DDA3937_RS02460 0.85 +1.8
545,124 + DDA3937_RS02460 0.85 -3.7
545,124 + DDA3937_RS02460 0.85 -0.6
545,124 + DDA3937_RS02460 0.85 -0.5
545,124 + DDA3937_RS02460 0.85 -0.6
545,125 - DDA3937_RS02460 0.85 -2.0
545,125 - DDA3937_RS02460 0.85 -1.4
545,125 - DDA3937_RS02460 0.85 +0.9
545,271 + -1.7
545,305 - +0.1
545,305 - +1.0
545,307 + -1.1
545,307 + +0.6
545,307 + -2.1
545,307 + -1.4
545,308 - -1.9
545,317 + +1.0
545,317 + +0.5
545,318 - -2.4
545,340 - -3.3
545,425 - -3.0
545,456 - -0.1
545,471 + -2.0
545,472 - -1.3
545,481 + -0.3
545,481 + -0.4
545,482 - +1.0
545,482 - -0.4
545,559 - -0.5
545,604 + +0.3
545,604 + -2.3
545,604 + +3.5
545,605 - -2.2
545,784 + DDA3937_RS02465 0.34 -2.2
545,784 + DDA3937_RS02465 0.34 +0.4
545,784 + DDA3937_RS02465 0.34 -0.2
545,784 + DDA3937_RS02465 0.34 -1.2
545,784 + DDA3937_RS02465 0.34 -0.7
545,784 + DDA3937_RS02465 0.34 -2.9
545,784 + DDA3937_RS02465 0.34 +0.9
545,785 - DDA3937_RS02465 0.34 -2.9
545,785 - DDA3937_RS02465 0.34 +0.5
545,785 - DDA3937_RS02465 0.34 -0.7
545,832 - DDA3937_RS02465 0.41 +0.2
545,952 - DDA3937_RS02465 0.57 +1.3
545,952 - DDA3937_RS02465 0.57 -1.4
545,986 - DDA3937_RS02465 0.62 -0.6
545,986 - DDA3937_RS02465 0.62 -2.0
546,026 + DDA3937_RS02465 0.68 -1.6
546,027 - DDA3937_RS02465 0.68 +0.8
546,064 - DDA3937_RS02465 0.73 -0.1
546,075 + DDA3937_RS02465 0.75 +1.3
546,075 + DDA3937_RS02465 0.75 -1.0
546,075 + DDA3937_RS02465 0.75 -1.1
546,076 - DDA3937_RS02465 0.75 +0.9
546,213 + +0.3
546,213 + -2.5
546,214 - -2.1
546,214 - -0.2
546,214 - -1.6
546,321 + -0.2
546,321 + +0.2
546,550 + DDA3937_RS02470 0.33 +0.6
546,746 + DDA3937_RS02470 0.58 +0.7
546,747 - DDA3937_RS02470 0.59 +1.1
546,747 - DDA3937_RS02470 0.59 +0.0
546,747 - DDA3937_RS02470 0.59 +0.5
546,747 - DDA3937_RS02470 0.59 -1.6
546,747 - DDA3937_RS02470 0.59 +0.0
546,747 - DDA3937_RS02470 0.59 +2.4
546,747 - DDA3937_RS02470 0.59 -3.9
546,776 + +0.0
546,776 + DDA3937_RS02470 0.62 -1.4
546,776 + DDA3937_RS02470 0.62 +0.8
546,776 + DDA3937_RS02470 0.62 +1.3
546,777 - DDA3937_RS02470 0.62 -1.5
546,833 - DDA3937_RS02470 0.70 +0.9
546,833 - DDA3937_RS02470 0.70 -2.2
546,907 + DDA3937_RS02470 0.79 +3.8
546,908 - DDA3937_RS02470 0.80 -2.5
547,007 + +1.6
547,058 - -1.2
547,061 + +1.8
547,061 + -2.6
547,061 + +1.4
547,061 + -2.3
547,062 - -3.1
547,062 - -1.7
547,062 - -0.7
547,101 + -0.2
547,101 + +2.9
547,102 - -2.3
547,144 + -2.8
547,144 + -3.5
547,145 - -2.9
547,147 + +0.3
547,148 - -1.5
547,167 - +0.5
547,167 - -0.4
547,213 - +0.4
547,229 - +1.7

Or see this region's nucleotide sequence