Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02325

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02320 and DDA3937_RS02325 are separated by 379 nucleotidesDDA3937_RS02325 and DDA3937_RS02330 are separated by 37 nucleotidesDDA3937_RS02330 and DDA3937_RS02335 are separated by 17 nucleotides DDA3937_RS02320: DDA3937_RS02320 - rhamnulokinase, at 514,474 to 515,946 _RS02320 DDA3937_RS02325: DDA3937_RS02325 - HTH-type transcriptional activator RhaS, at 516,326 to 517,162 _RS02325 DDA3937_RS02330: DDA3937_RS02330 - HTH-type transcriptional activator RhaR, at 517,200 to 518,054 _RS02330 DDA3937_RS02335: DDA3937_RS02335 - hypothetical protein, at 518,072 to 518,368 _RS02335 Position (kb) 516 517 518Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 515.351 kb on + strand, within DDA3937_RS02320at 515.351 kb on + strand, within DDA3937_RS02320at 515.420 kb on + strand, within DDA3937_RS02320at 515.421 kb on - strand, within DDA3937_RS02320at 515.421 kb on - strand, within DDA3937_RS02320at 515.421 kb on - strand, within DDA3937_RS02320at 515.459 kb on + strand, within DDA3937_RS02320at 515.459 kb on + strand, within DDA3937_RS02320at 515.459 kb on + strand, within DDA3937_RS02320at 515.460 kb on - strand, within DDA3937_RS02320at 515.648 kb on + strand, within DDA3937_RS02320at 515.648 kb on + strand, within DDA3937_RS02320at 515.648 kb on + strand, within DDA3937_RS02320at 515.649 kb on - strand, within DDA3937_RS02320at 515.696 kb on - strand, within DDA3937_RS02320at 515.696 kb on - strand, within DDA3937_RS02320at 515.696 kb on - strand, within DDA3937_RS02320at 515.696 kb on - strand, within DDA3937_RS02320at 515.926 kb on + strandat 515.926 kb on + strandat 515.926 kb on + strandat 515.927 kb on - strandat 515.927 kb on - strandat 515.927 kb on - strandat 515.927 kb on - strandat 515.927 kb on - strandat 515.927 kb on - strandat 515.927 kb on - strandat 515.931 kb on - strandat 515.931 kb on - strandat 515.931 kb on - strandat 515.938 kb on - strandat 515.979 kb on + strandat 515.979 kb on + strandat 515.979 kb on + strandat 515.979 kb on + strandat 515.980 kb on - strandat 515.980 kb on - strandat 515.984 kb on - strandat 515.984 kb on - strandat 515.994 kb on + strandat 515.994 kb on + strandat 515.998 kb on + strandat 515.998 kb on + strandat 515.998 kb on + strandat 515.999 kb on - strandat 516.030 kb on - strandat 516.030 kb on - strandat 516.030 kb on - strandat 516.142 kb on + strandat 516.249 kb on - strandat 516.279 kb on + strandat 516.282 kb on + strandat 516.392 kb on - strandat 516.553 kb on - strand, within DDA3937_RS02325at 516.553 kb on - strand, within DDA3937_RS02325at 516.789 kb on + strand, within DDA3937_RS02325at 516.790 kb on - strand, within DDA3937_RS02325at 517.152 kb on - strandat 517.152 kb on - strandat 517.152 kb on - strandat 517.152 kb on - strandat 517.160 kb on + strandat 517.160 kb on + strandat 517.160 kb on + strandat 517.168 kb on + strandat 517.168 kb on + strandat 517.169 kb on - strandat 517.169 kb on - strandat 517.170 kb on + strandat 517.170 kb on + strandat 517.176 kb on + strandat 517.177 kb on - strandat 517.183 kb on + strandat 517.185 kb on + strandat 517.185 kb on + strandat 517.237 kb on - strandat 517.237 kb on - strandat 517.379 kb on + strand, within DDA3937_RS02330at 517.380 kb on - strand, within DDA3937_RS02330at 517.380 kb on - strand, within DDA3937_RS02330at 517.382 kb on + strand, within DDA3937_RS02330at 517.383 kb on - strand, within DDA3937_RS02330at 517.383 kb on - strand, within DDA3937_RS02330at 517.401 kb on + strand, within DDA3937_RS02330at 517.401 kb on + strand, within DDA3937_RS02330at 517.401 kb on + strand, within DDA3937_RS02330at 517.401 kb on + strand, within DDA3937_RS02330at 517.401 kb on + strand, within DDA3937_RS02330at 517.401 kb on + strand, within DDA3937_RS02330at 517.401 kb on + strand, within DDA3937_RS02330at 517.402 kb on - strand, within DDA3937_RS02330at 517.402 kb on - strand, within DDA3937_RS02330at 517.402 kb on - strand, within DDA3937_RS02330at 517.402 kb on - strand, within DDA3937_RS02330at 517.402 kb on - strand, within DDA3937_RS02330at 517.402 kb on - strand, within DDA3937_RS02330at 517.402 kb on - strand, within DDA3937_RS02330at 517.424 kb on + strand, within DDA3937_RS02330at 517.425 kb on - strand, within DDA3937_RS02330at 517.425 kb on - strand, within DDA3937_RS02330at 517.425 kb on - strand, within DDA3937_RS02330at 517.425 kb on - strand, within DDA3937_RS02330at 517.428 kb on + strandat 517.428 kb on + strand, within DDA3937_RS02330at 517.428 kb on + strand, within DDA3937_RS02330at 517.428 kb on + strand, within DDA3937_RS02330at 517.429 kb on - strand, within DDA3937_RS02330at 517.429 kb on - strand, within DDA3937_RS02330at 517.429 kb on - strand, within DDA3937_RS02330at 517.429 kb on - strand, within DDA3937_RS02330at 517.429 kb on - strand, within DDA3937_RS02330at 517.429 kb on - strand, within DDA3937_RS02330at 517.429 kb on - strand, within DDA3937_RS02330at 517.429 kb on - strand, within DDA3937_RS02330at 517.460 kb on + strand, within DDA3937_RS02330at 517.460 kb on + strand, within DDA3937_RS02330at 517.461 kb on - strand, within DDA3937_RS02330at 517.461 kb on - strand, within DDA3937_RS02330at 517.467 kb on + strand, within DDA3937_RS02330at 517.467 kb on + strand, within DDA3937_RS02330at 517.467 kb on + strand, within DDA3937_RS02330at 517.467 kb on + strand, within DDA3937_RS02330at 517.467 kb on + strand, within DDA3937_RS02330at 517.467 kb on + strand, within DDA3937_RS02330at 517.468 kb on - strand, within DDA3937_RS02330at 517.468 kb on - strand, within DDA3937_RS02330at 517.468 kb on - strand, within DDA3937_RS02330at 517.468 kb on - strand, within DDA3937_RS02330at 517.574 kb on + strand, within DDA3937_RS02330at 517.574 kb on + strand, within DDA3937_RS02330at 517.575 kb on - strand, within DDA3937_RS02330at 517.575 kb on - strand, within DDA3937_RS02330at 517.575 kb on - strand, within DDA3937_RS02330at 517.801 kb on + strand, within DDA3937_RS02330at 517.869 kb on + strand, within DDA3937_RS02330at 517.869 kb on + strand, within DDA3937_RS02330at 517.869 kb on + strand, within DDA3937_RS02330at 517.870 kb on - strand, within DDA3937_RS02330at 517.971 kb on + strandat 518.050 kb on + strandat 518.050 kb on + strandat 518.051 kb on - strandat 518.051 kb on - strandat 518.051 kb on - strandat 518.051 kb on - strandat 518.052 kb on + strandat 518.053 kb on - strandat 518.060 kb on + strandat 518.074 kb on - strandat 518.074 kb on - strandat 518.115 kb on + strand, within DDA3937_RS02335at 518.116 kb on - strand, within DDA3937_RS02335at 518.116 kb on - strand, within DDA3937_RS02335at 518.129 kb on + strand, within DDA3937_RS02335at 518.138 kb on + strand, within DDA3937_RS02335at 518.138 kb on + strand, within DDA3937_RS02335at 518.139 kb on - strand, within DDA3937_RS02335at 518.142 kb on + strand, within DDA3937_RS02335at 518.142 kb on + strand, within DDA3937_RS02335at 518.142 kb on + strand, within DDA3937_RS02335at 518.142 kb on + strand, within DDA3937_RS02335at 518.143 kb on - strand, within DDA3937_RS02335at 518.143 kb on - strand, within DDA3937_RS02335at 518.162 kb on - strand, within DDA3937_RS02335

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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515,351 + DDA3937_RS02320 0.60 -0.7
515,351 + DDA3937_RS02320 0.60 -1.8
515,420 + DDA3937_RS02320 0.64 +0.2
515,421 - DDA3937_RS02320 0.64 -2.2
515,421 - DDA3937_RS02320 0.64 +0.5
515,421 - DDA3937_RS02320 0.64 +1.4
515,459 + DDA3937_RS02320 0.67 -1.0
515,459 + DDA3937_RS02320 0.67 +1.7
515,459 + DDA3937_RS02320 0.67 +1.5
515,460 - DDA3937_RS02320 0.67 +2.2
515,648 + DDA3937_RS02320 0.80 -0.8
515,648 + DDA3937_RS02320 0.80 -2.5
515,648 + DDA3937_RS02320 0.80 -1.6
515,649 - DDA3937_RS02320 0.80 -2.4
515,696 - DDA3937_RS02320 0.83 +1.0
515,696 - DDA3937_RS02320 0.83 -0.7
515,696 - DDA3937_RS02320 0.83 +1.6
515,696 - DDA3937_RS02320 0.83 -0.7
515,926 + -0.2
515,926 + +0.3
515,926 + -0.7
515,927 - +1.5
515,927 - +2.2
515,927 - +1.1
515,927 - -2.0
515,927 - +1.2
515,927 - -1.7
515,927 - -1.0
515,931 - +1.6
515,931 - +1.0
515,931 - -3.5
515,938 - +0.7
515,979 + +0.9
515,979 + -3.4
515,979 + -2.2
515,979 + +1.6
515,980 - -0.5
515,980 - -2.2
515,984 - -3.2
515,984 - -2.0
515,994 + -0.9
515,994 + +0.3
515,998 + +0.2
515,998 + +1.6
515,998 + -0.7
515,999 - -1.2
516,030 - +2.4
516,030 - +0.3
516,030 - -0.2
516,142 + +0.5
516,249 - -3.1
516,279 + +0.4
516,282 + -0.4
516,392 - -4.0
516,553 - DDA3937_RS02325 0.27 -1.0
516,553 - DDA3937_RS02325 0.27 -2.9
516,789 + DDA3937_RS02325 0.55 -1.7
516,790 - DDA3937_RS02325 0.55 -0.4
517,152 - +2.0
517,152 - +0.2
517,152 - -2.2
517,152 - +0.4
517,160 + -1.2
517,160 + -0.5
517,160 + -3.2
517,168 + -0.4
517,168 + -0.9
517,169 - +0.2
517,169 - -3.2
517,170 + +1.1
517,170 + -1.4
517,176 + -3.5
517,177 - -3.8
517,183 + +0.0
517,185 + -0.5
517,185 + -1.6
517,237 - -1.5
517,237 - -0.2
517,379 + DDA3937_RS02330 0.21 -1.8
517,380 - DDA3937_RS02330 0.21 +0.2
517,380 - DDA3937_RS02330 0.21 +0.0
517,382 + DDA3937_RS02330 0.21 +0.2
517,383 - DDA3937_RS02330 0.21 -1.6
517,383 - DDA3937_RS02330 0.21 -1.5
517,401 + DDA3937_RS02330 0.24 +0.2
517,401 + DDA3937_RS02330 0.24 -2.3
517,401 + DDA3937_RS02330 0.24 +0.9
517,401 + DDA3937_RS02330 0.24 +0.2
517,401 + DDA3937_RS02330 0.24 -2.2
517,401 + DDA3937_RS02330 0.24 +0.1
517,401 + DDA3937_RS02330 0.24 -2.9
517,402 - DDA3937_RS02330 0.24 +0.3
517,402 - DDA3937_RS02330 0.24 +0.1
517,402 - DDA3937_RS02330 0.24 -1.3
517,402 - DDA3937_RS02330 0.24 +0.0
517,402 - DDA3937_RS02330 0.24 -3.0
517,402 - DDA3937_RS02330 0.24 -2.1
517,402 - DDA3937_RS02330 0.24 -0.9
517,424 + DDA3937_RS02330 0.26 -1.9
517,425 - DDA3937_RS02330 0.26 -1.7
517,425 - DDA3937_RS02330 0.26 +0.8
517,425 - DDA3937_RS02330 0.26 +0.5
517,425 - DDA3937_RS02330 0.26 -0.3
517,428 + +0.6
517,428 + DDA3937_RS02330 0.27 -2.7
517,428 + DDA3937_RS02330 0.27 +0.9
517,428 + DDA3937_RS02330 0.27 -2.9
517,429 - DDA3937_RS02330 0.27 -1.7
517,429 - DDA3937_RS02330 0.27 -0.7
517,429 - DDA3937_RS02330 0.27 -1.4
517,429 - DDA3937_RS02330 0.27 -0.2
517,429 - DDA3937_RS02330 0.27 -1.4
517,429 - DDA3937_RS02330 0.27 +0.6
517,429 - DDA3937_RS02330 0.27 -1.4
517,429 - DDA3937_RS02330 0.27 -2.2
517,460 + DDA3937_RS02330 0.30 -0.4
517,460 + DDA3937_RS02330 0.30 -2.7
517,461 - DDA3937_RS02330 0.31 -2.4
517,461 - DDA3937_RS02330 0.31 -3.0
517,467 + DDA3937_RS02330 0.31 +1.2
517,467 + DDA3937_RS02330 0.31 -3.9
517,467 + DDA3937_RS02330 0.31 -0.4
517,467 + DDA3937_RS02330 0.31 -3.7
517,467 + DDA3937_RS02330 0.31 -2.6
517,467 + DDA3937_RS02330 0.31 +2.6
517,468 - DDA3937_RS02330 0.31 +0.3
517,468 - DDA3937_RS02330 0.31 +0.5
517,468 - DDA3937_RS02330 0.31 +0.7
517,468 - DDA3937_RS02330 0.31 -2.7
517,574 + DDA3937_RS02330 0.44 +0.8
517,574 + DDA3937_RS02330 0.44 +0.5
517,575 - DDA3937_RS02330 0.44 -0.6
517,575 - DDA3937_RS02330 0.44 -0.7
517,575 - DDA3937_RS02330 0.44 -0.8
517,801 + DDA3937_RS02330 0.70 +0.1
517,869 + DDA3937_RS02330 0.78 -0.2
517,869 + DDA3937_RS02330 0.78 -0.9
517,869 + DDA3937_RS02330 0.78 -1.7
517,870 - DDA3937_RS02330 0.78 -0.3
517,971 + -2.7
518,050 + -0.2
518,050 + -0.4
518,051 - -1.0
518,051 - -1.2
518,051 - -1.9
518,051 - -2.3
518,052 + -1.9
518,053 - -1.2
518,060 + -1.7
518,074 - -1.7
518,074 - -3.8
518,115 + DDA3937_RS02335 0.14 -0.4
518,116 - DDA3937_RS02335 0.15 -2.0
518,116 - DDA3937_RS02335 0.15 -3.2
518,129 + DDA3937_RS02335 0.19 +0.0
518,138 + DDA3937_RS02335 0.22 +1.3
518,138 + DDA3937_RS02335 0.22 -2.1
518,139 - DDA3937_RS02335 0.23 +0.6
518,142 + DDA3937_RS02335 0.24 +2.0
518,142 + DDA3937_RS02335 0.24 -2.4
518,142 + DDA3937_RS02335 0.24 -2.2
518,142 + DDA3937_RS02335 0.24 -1.0
518,143 - DDA3937_RS02335 0.24 +0.0
518,143 - DDA3937_RS02335 0.24 -1.6
518,162 - DDA3937_RS02335 0.30 -1.9

Or see this region's nucleotide sequence