Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02260 and DDA3937_RS21795 are separated by 230 nucleotides DDA3937_RS21795 and DDA3937_RS02265 are separated by 170 nucleotides DDA3937_RS02265 and DDA3937_RS02270 overlap by 4 nucleotides DDA3937_RS02270 and DDA3937_RS02275 are separated by 44 nucleotides
DDA3937_RS02260: DDA3937_RS02260 - 1-aminocyclopropane-1-carboxylate deaminase, at 501,271 to 502,287
_RS02260
DDA3937_RS21795: DDA3937_RS21795 - CopG family transcriptional regulator, at 502,518 to 502,700
_RS21795
DDA3937_RS02265: DDA3937_RS02265 - AAA family ATPase, at 502,871 to 503,962
_RS02265
DDA3937_RS02270: DDA3937_RS02270 - DUF4276 family protein, at 503,959 to 504,612
_RS02270
DDA3937_RS02275: DDA3937_RS02275 - Lrp/AsnC ligand binding domain-containing protein, at 504,657 to 505,160
_RS02275
Position (kb) 502
503
504 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 501.977 kb on + strand, within DDA3937_RS02260 at 501.978 kb on - strand, within DDA3937_RS02260 at 501.978 kb on - strand, within DDA3937_RS02260 at 502.150 kb on + strand, within DDA3937_RS02260 at 502.173 kb on + strand, within DDA3937_RS02260 at 502.174 kb on - strand, within DDA3937_RS02260 at 502.174 kb on - strand at 502.174 kb on - strand, within DDA3937_RS02260 at 502.225 kb on + strand at 502.225 kb on + strand at 502.225 kb on + strand at 502.225 kb on + strand at 502.254 kb on - strand at 502.261 kb on + strand at 502.261 kb on + strand at 502.261 kb on + strand at 502.267 kb on + strand at 502.267 kb on + strand at 502.268 kb on - strand at 502.268 kb on - strand at 502.269 kb on + strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.294 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.329 kb on - strand at 502.360 kb on + strand at 502.360 kb on + strand at 502.360 kb on + strand at 502.361 kb on - strand at 502.361 kb on - strand at 502.361 kb on - strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.450 kb on + strand at 502.450 kb on + strand at 502.450 kb on + strand at 502.463 kb on + strand at 502.482 kb on - strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.488 kb on - strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.532 kb on + strand at 502.532 kb on + strand at 502.536 kb on - strand at 502.586 kb on + strand, within DDA3937_RS21795 at 502.587 kb on - strand, within DDA3937_RS21795 at 502.587 kb on - strand, within DDA3937_RS21795 at 502.587 kb on - strand at 502.704 kb on - strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.814 kb on + strand at 502.815 kb on - strand at 502.815 kb on - strand at 502.994 kb on - strand, within DDA3937_RS02265 at 503.156 kb on - strand, within DDA3937_RS02265 at 503.549 kb on - strand at 503.618 kb on - strand, within DDA3937_RS02265 at 503.718 kb on - strand, within DDA3937_RS02265 at 503.743 kb on - strand, within DDA3937_RS02265 at 503.773 kb on - strand, within DDA3937_RS02265 at 503.906 kb on + strand at 503.906 kb on + strand at 503.906 kb on + strand at 503.907 kb on - strand at 503.907 kb on - strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.974 kb on - strand at 503.974 kb on - strand at 503.974 kb on - strand at 504.037 kb on + strand, within DDA3937_RS02270 at 504.085 kb on + strand, within DDA3937_RS02270 at 504.086 kb on - strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.098 kb on + strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.106 kb on + strand, within DDA3937_RS02270 at 504.106 kb on + strand, within DDA3937_RS02270 at 504.107 kb on - strand, within DDA3937_RS02270 at 504.128 kb on + strand, within DDA3937_RS02270 at 504.129 kb on - strand, within DDA3937_RS02270 at 504.129 kb on - strand, within DDA3937_RS02270 at 504.141 kb on + strand, within DDA3937_RS02270 at 504.141 kb on + strand, within DDA3937_RS02270 at 504.142 kb on - strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.182 kb on - strand, within DDA3937_RS02270 at 504.182 kb on - strand, within DDA3937_RS02270 at 504.184 kb on + strand, within DDA3937_RS02270 at 504.184 kb on + strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.244 kb on + strand, within DDA3937_RS02270 at 504.244 kb on + strand at 504.276 kb on + strand, within DDA3937_RS02270 at 504.276 kb on + strand at 504.276 kb on + strand, within DDA3937_RS02270 at 504.276 kb on + strand, within DDA3937_RS02270 at 504.277 kb on - strand, within DDA3937_RS02270 at 504.277 kb on - strand, within DDA3937_RS02270 at 504.285 kb on + strand, within DDA3937_RS02270 at 504.286 kb on - strand, within DDA3937_RS02270 at 504.286 kb on - strand, within DDA3937_RS02270 at 504.328 kb on + strand, within DDA3937_RS02270 at 504.329 kb on - strand, within DDA3937_RS02270 at 504.445 kb on - strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.474 kb on + strand, within DDA3937_RS02270 at 504.486 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.496 kb on + strand, within DDA3937_RS02270 at 504.497 kb on - strand, within DDA3937_RS02270 at 504.509 kb on + strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.615 kb on + strand at 504.615 kb on + strand at 504.616 kb on - strand at 504.616 kb on - strand at 504.628 kb on - strand at 504.637 kb on - strand at 504.637 kb on - strand at 504.658 kb on + strand at 504.659 kb on - strand at 504.701 kb on + strand at 504.758 kb on + strand, within DDA3937_RS02275 at 504.758 kb on + strand, within DDA3937_RS02275 at 504.759 kb on - strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.961 kb on + strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 501,977 + DDA3937_RS02260 0.69 -0.2 501,978 - DDA3937_RS02260 0.70 -2.3 501,978 - DDA3937_RS02260 0.70 +0.0 502,150 + DDA3937_RS02260 0.86 -2.0 502,173 + DDA3937_RS02260 0.89 -2.2 502,174 - DDA3937_RS02260 0.89 -1.4 502,174 - -1.2 502,174 - DDA3937_RS02260 0.89 +1.6 502,225 + +0.6 502,225 + +1.0 502,225 + -3.2 502,225 + -1.6 502,254 - -0.2 502,261 + +0.1 502,261 + +0.4 502,261 + +0.1 502,267 + -0.0 502,267 + -0.1 502,268 - -1.9 502,268 - -1.0 502,269 + -1.4 502,270 - -0.7 502,270 - -2.2 502,270 - -3.3 502,270 - -2.5 502,294 + -0.7 502,316 + +1.8 502,316 + -2.8 502,316 + +0.3 502,316 + +0.0 502,316 + +0.8 502,316 + +0.1 502,316 + -0.0 502,316 + -0.3 502,316 + -1.2 502,316 + -1.6 502,316 + +0.1 502,316 + -2.7 502,317 - -0.6 502,317 - -3.4 502,317 - -2.1 502,317 - +0.8 502,317 - -2.7 502,317 - -0.4 502,317 - -1.7 502,317 - -2.2 502,317 - -3.0 502,317 - +1.7 502,329 - +0.8 502,360 + +0.6 502,360 + +0.6 502,360 + -0.4 502,361 - -0.9 502,361 - +0.4 502,361 - -0.6 502,374 + +2.0 502,374 + -1.1 502,374 + -1.0 502,385 - +1.9 502,385 - -1.4 502,385 - -0.3 502,385 - +3.5 502,398 - -1.6 502,398 - -1.2 502,398 - -2.1 502,398 - -1.0 502,450 + +0.4 502,450 + +1.1 502,450 + -3.4 502,463 + -1.6 502,482 - -0.7 502,487 + +0.4 502,487 + -2.6 502,487 + -0.6 502,487 + -3.0 502,487 + -2.6 502,488 - -1.6 502,489 + -0.9 502,489 + -1.2 502,489 + -2.2 502,489 + -1.7 502,489 + -2.1 502,489 + +0.1 502,490 - -1.2 502,490 - +1.3 502,490 - -1.6 502,490 - -2.1 502,490 - +0.6 502,532 + -1.4 502,532 + -0.2 502,536 - -0.9 502,586 + DDA3937_RS21795 0.37 +0.6 502,587 - DDA3937_RS21795 0.38 +1.6 502,587 - DDA3937_RS21795 0.38 -2.1 502,587 - +4.4 502,704 - -1.6 502,810 + -2.2 502,810 + -2.1 502,810 + -0.4 502,810 + -0.8 502,810 + -3.0 502,811 - +2.6 502,811 - -0.9 502,811 - -1.1 502,811 - +0.9 502,811 - -3.0 502,811 - -2.1 502,811 - -2.1 502,814 + -2.4 502,815 - -3.5 502,815 - -3.3 502,994 - DDA3937_RS02265 0.11 -2.4 503,156 - DDA3937_RS02265 0.26 -1.4 503,549 - +0.6 503,618 - DDA3937_RS02265 0.68 -0.1 503,718 - DDA3937_RS02265 0.78 -1.0 503,743 - DDA3937_RS02265 0.80 -2.9 503,773 - DDA3937_RS02265 0.83 -2.0 503,906 + -0.4 503,906 + -1.2 503,906 + -1.0 503,907 - -3.7 503,907 - +1.9 503,908 + +1.9 503,908 + -2.4 503,908 + -0.6 503,908 + -2.9 503,909 - -1.8 503,909 - -4.7 503,909 - -3.5 503,909 - +0.9 503,909 - -1.6 503,909 - -0.0 503,974 - -1.2 503,974 - -2.9 503,974 - -2.3 504,037 + DDA3937_RS02270 0.12 -0.2 504,085 + DDA3937_RS02270 0.19 +0.0 504,086 - DDA3937_RS02270 0.19 +1.3 504,087 + DDA3937_RS02270 0.20 +1.3 504,087 + DDA3937_RS02270 0.20 -2.1 504,087 + DDA3937_RS02270 0.20 -1.0 504,088 - DDA3937_RS02270 0.20 -0.5 504,088 - DDA3937_RS02270 0.20 +0.1 504,088 - DDA3937_RS02270 0.20 -3.6 504,098 + DDA3937_RS02270 0.21 -1.0 504,099 - DDA3937_RS02270 0.21 +0.2 504,099 - DDA3937_RS02270 0.21 -0.4 504,099 - DDA3937_RS02270 0.21 +0.0 504,099 - DDA3937_RS02270 0.21 -2.0 504,099 - DDA3937_RS02270 0.21 -0.4 504,106 + DDA3937_RS02270 0.22 +1.3 504,106 + DDA3937_RS02270 0.22 +0.3 504,107 - DDA3937_RS02270 0.23 -2.0 504,128 + DDA3937_RS02270 0.26 +0.1 504,129 - DDA3937_RS02270 0.26 +0.0 504,129 - DDA3937_RS02270 0.26 +0.5 504,141 + DDA3937_RS02270 0.28 -0.6 504,141 + DDA3937_RS02270 0.28 -1.4 504,142 - DDA3937_RS02270 0.28 -2.3 504,176 + DDA3937_RS02270 0.33 -1.1 504,176 + DDA3937_RS02270 0.33 -2.6 504,176 + DDA3937_RS02270 0.33 -1.7 504,176 + DDA3937_RS02270 0.33 -3.7 504,176 + DDA3937_RS02270 0.33 -1.4 504,176 + +3.2 504,176 + DDA3937_RS02270 0.33 -1.1 504,176 + DDA3937_RS02270 0.33 -1.5 504,177 - DDA3937_RS02270 0.33 -1.6 504,177 - DDA3937_RS02270 0.33 -0.7 504,177 - DDA3937_RS02270 0.33 -0.6 504,177 - DDA3937_RS02270 0.33 -1.7 504,177 - DDA3937_RS02270 0.33 -0.4 504,177 - DDA3937_RS02270 0.33 -2.0 504,177 - DDA3937_RS02270 0.33 -2.2 504,177 - DDA3937_RS02270 0.33 -0.5 504,177 - DDA3937_RS02270 0.33 -1.3 504,177 - DDA3937_RS02270 0.33 -1.1 504,181 + DDA3937_RS02270 0.34 -1.2 504,181 + DDA3937_RS02270 0.34 -0.4 504,181 + DDA3937_RS02270 0.34 -0.3 504,182 - DDA3937_RS02270 0.34 +0.0 504,182 - DDA3937_RS02270 0.34 -1.4 504,184 + DDA3937_RS02270 0.34 -2.5 504,184 + DDA3937_RS02270 0.34 -0.6 504,185 - DDA3937_RS02270 0.35 -2.6 504,185 - DDA3937_RS02270 0.35 +1.6 504,185 - DDA3937_RS02270 0.35 -1.6 504,185 - DDA3937_RS02270 0.35 -2.1 504,244 + DDA3937_RS02270 0.44 -2.0 504,244 + -1.0 504,276 + DDA3937_RS02270 0.48 -3.1 504,276 + +1.6 504,276 + DDA3937_RS02270 0.48 +0.3 504,276 + DDA3937_RS02270 0.48 -3.2 504,277 - DDA3937_RS02270 0.49 -0.4 504,277 - DDA3937_RS02270 0.49 -2.1 504,285 + DDA3937_RS02270 0.50 -1.2 504,286 - DDA3937_RS02270 0.50 -0.4 504,286 - DDA3937_RS02270 0.50 +1.5 504,328 + DDA3937_RS02270 0.56 -2.6 504,329 - DDA3937_RS02270 0.57 -1.7 504,445 - DDA3937_RS02270 0.74 -2.1 504,468 + DDA3937_RS02270 0.78 -0.6 504,468 + DDA3937_RS02270 0.78 -0.4 504,474 + DDA3937_RS02270 0.79 -0.8 504,486 + DDA3937_RS02270 0.81 -2.1 504,492 + DDA3937_RS02270 0.81 +0.4 504,492 + DDA3937_RS02270 0.81 -3.4 504,492 + +0.0 504,492 + DDA3937_RS02270 0.81 +0.8 504,492 + DDA3937_RS02270 0.81 -2.9 504,493 - DDA3937_RS02270 0.82 -2.4 504,493 - DDA3937_RS02270 0.82 +0.2 504,496 + DDA3937_RS02270 0.82 -0.4 504,497 - DDA3937_RS02270 0.82 -1.8 504,509 + DDA3937_RS02270 0.84 -1.2 504,510 - DDA3937_RS02270 0.84 -2.0 504,510 - DDA3937_RS02270 0.84 +0.9 504,510 - DDA3937_RS02270 0.84 +0.8 504,615 + -0.4 504,615 + -2.1 504,616 - -0.3 504,616 - -3.1 504,628 - +1.6 504,637 - -3.1 504,637 - -1.9 504,658 + +0.3 504,659 - -0.5 504,701 + -1.4 504,758 + DDA3937_RS02275 0.20 +1.0 504,758 + DDA3937_RS02275 0.20 +1.3 504,759 - DDA3937_RS02275 0.20 +2.5 504,799 + DDA3937_RS02275 0.28 +0.0 504,799 + DDA3937_RS02275 0.28 -0.7 504,799 + DDA3937_RS02275 0.28 -1.6 504,800 - DDA3937_RS02275 0.28 -1.1 504,800 - DDA3937_RS02275 0.28 +1.4 504,800 - DDA3937_RS02275 0.28 -3.0 504,800 - DDA3937_RS02275 0.28 +0.8 504,800 - DDA3937_RS02275 0.28 +0.1 504,833 + DDA3937_RS02275 0.35 -0.4 504,833 + DDA3937_RS02275 0.35 -2.0 504,834 - DDA3937_RS02275 0.35 -0.4 504,834 - DDA3937_RS02275 0.35 -1.4 504,961 + DDA3937_RS02275 0.60 +2.1 504,962 - DDA3937_RS02275 0.61 -0.7 504,962 - DDA3937_RS02275 0.61 -0.4 504,962 - -0.4
Or see this region's nucleotide sequence