Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02235 and DDA3937_RS02240 are separated by 101 nucleotides DDA3937_RS02240 and DDA3937_RS02245 overlap by 4 nucleotides DDA3937_RS02245 and DDA3937_RS02250 are separated by 40 nucleotides
DDA3937_RS02235: DDA3937_RS02235 - ABC transporter permease, at 495,397 to 496,323
_RS02235
DDA3937_RS02240: DDA3937_RS02240 - ATP-binding cassette domain-containing protein, at 496,425 to 497,399
_RS02240
DDA3937_RS02245: DDA3937_RS02245 - ABC transporter ATP-binding protein, at 497,396 to 498,259
_RS02245
DDA3937_RS02250: DDA3937_RS02250 - M20 family metallopeptidase, at 498,300 to 499,718
_RS02250
Position (kb) 496
497
498 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 495.546 kb on + strand, within DDA3937_RS02235 at 495.546 kb on + strand, within DDA3937_RS02235 at 495.546 kb on + strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.592 kb on + strand, within DDA3937_RS02235 at 495.689 kb on - strand, within DDA3937_RS02235 at 495.793 kb on + strand, within DDA3937_RS02235 at 495.826 kb on + strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.331 kb on - strand at 496.331 kb on - strand at 496.349 kb on + strand at 496.349 kb on + strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.371 kb on - strand at 496.815 kb on + strand, within DDA3937_RS02240 at 496.815 kb on + strand, within DDA3937_RS02240 at 496.815 kb on + strand, within DDA3937_RS02240 at 497.014 kb on + strand, within DDA3937_RS02240 at 497.014 kb on + strand, within DDA3937_RS02240 at 497.015 kb on - strand, within DDA3937_RS02240 at 497.015 kb on - strand, within DDA3937_RS02240 at 497.015 kb on - strand, within DDA3937_RS02240 at 497.015 kb on - strand, within DDA3937_RS02240 at 497.100 kb on + strand, within DDA3937_RS02240 at 497.100 kb on + strand, within DDA3937_RS02240 at 497.100 kb on + strand, within DDA3937_RS02240 at 497.101 kb on - strand, within DDA3937_RS02240 at 497.101 kb on - strand, within DDA3937_RS02240 at 497.164 kb on - strand, within DDA3937_RS02240 at 497.164 kb on - strand, within DDA3937_RS02240 at 497.164 kb on - strand, within DDA3937_RS02240 at 497.164 kb on - strand, within DDA3937_RS02240 at 497.332 kb on - strand at 497.332 kb on - strand at 497.396 kb on - strand at 497.741 kb on + strand, within DDA3937_RS02245 at 497.742 kb on - strand, within DDA3937_RS02245 at 497.753 kb on - strand, within DDA3937_RS02245 at 497.875 kb on + strand, within DDA3937_RS02245 at 497.875 kb on + strand, within DDA3937_RS02245 at 497.875 kb on + strand, within DDA3937_RS02245 at 497.875 kb on + strand, within DDA3937_RS02245 at 497.876 kb on - strand, within DDA3937_RS02245 at 497.876 kb on - strand, within DDA3937_RS02245 at 497.876 kb on - strand, within DDA3937_RS02245 at 497.876 kb on - strand, within DDA3937_RS02245 at 497.888 kb on + strand, within DDA3937_RS02245 at 498.004 kb on - strand, within DDA3937_RS02245 at 498.020 kb on - strand, within DDA3937_RS02245 at 498.059 kb on + strand, within DDA3937_RS02245 at 498.059 kb on + strand, within DDA3937_RS02245 at 498.059 kb on + strand, within DDA3937_RS02245 at 498.060 kb on - strand, within DDA3937_RS02245 at 498.060 kb on - strand, within DDA3937_RS02245 at 498.060 kb on - strand, within DDA3937_RS02245 at 498.095 kb on + strand, within DDA3937_RS02245 at 498.095 kb on + strand, within DDA3937_RS02245 at 498.096 kb on - strand, within DDA3937_RS02245 at 498.096 kb on - strand, within DDA3937_RS02245 at 498.125 kb on - strand, within DDA3937_RS02245 at 498.162 kb on + strand, within DDA3937_RS02245 at 498.185 kb on + strand at 498.186 kb on - strand at 498.186 kb on - strand at 498.186 kb on - strand at 498.186 kb on - strand at 498.188 kb on - strand at 498.257 kb on + strand at 498.257 kb on + strand at 498.274 kb on - strand at 498.336 kb on + strand at 498.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 495,546 + DDA3937_RS02235 0.16 -2.3 495,546 + DDA3937_RS02235 0.16 -4.4 495,546 + DDA3937_RS02235 0.16 +0.3 495,547 - DDA3937_RS02235 0.16 +1.1 495,547 - DDA3937_RS02235 0.16 -2.8 495,547 - DDA3937_RS02235 0.16 +0.3 495,547 - DDA3937_RS02235 0.16 -0.4 495,547 - DDA3937_RS02235 0.16 -1.3 495,547 - -0.4 495,547 - DDA3937_RS02235 0.16 -0.4 495,547 - DDA3937_RS02235 0.16 +0.3 495,549 - DDA3937_RS02235 0.16 -0.4 495,549 - DDA3937_RS02235 0.16 -1.8 495,549 - DDA3937_RS02235 0.16 -0.4 495,549 - DDA3937_RS02235 0.16 -1.2 495,549 - DDA3937_RS02235 0.16 -0.5 495,549 - DDA3937_RS02235 0.16 -1.0 495,592 + DDA3937_RS02235 0.21 -0.4 495,689 - DDA3937_RS02235 0.31 -2.6 495,793 + DDA3937_RS02235 0.43 -0.6 495,826 + DDA3937_RS02235 0.46 -2.2 495,827 - DDA3937_RS02235 0.46 -0.7 495,827 - DDA3937_RS02235 0.46 +0.3 495,827 - DDA3937_RS02235 0.46 +0.5 495,827 - DDA3937_RS02235 0.46 -2.1 495,827 - DDA3937_RS02235 0.46 +0.5 495,827 - DDA3937_RS02235 0.46 -4.5 496,201 + DDA3937_RS02235 0.87 -2.0 496,201 + DDA3937_RS02235 0.87 +0.8 496,201 + DDA3937_RS02235 0.87 -2.1 496,201 + DDA3937_RS02235 0.87 +1.9 496,201 + DDA3937_RS02235 0.87 +1.6 496,201 + DDA3937_RS02235 0.87 -1.4 496,201 + -1.0 496,201 + DDA3937_RS02235 0.87 -0.2 496,201 + DDA3937_RS02235 0.87 -1.2 496,201 + DDA3937_RS02235 0.87 -0.7 496,202 - DDA3937_RS02235 0.87 -0.4 496,202 - DDA3937_RS02235 0.87 -2.0 496,202 - DDA3937_RS02235 0.87 -1.2 496,331 - +0.4 496,331 - -3.3 496,349 + -1.7 496,349 + -0.4 496,350 - -1.7 496,350 - -0.7 496,350 - -3.3 496,350 - -2.3 496,355 + +0.2 496,355 + -2.1 496,355 + +1.0 496,355 + -0.6 496,355 + +0.6 496,355 + -0.2 496,355 + +0.8 496,356 - -1.0 496,356 - -0.9 496,356 - -0.7 496,356 - -1.6 496,356 - -0.1 496,356 - +0.0 496,356 - -2.4 496,356 - -0.2 496,371 - -1.4 496,815 + DDA3937_RS02240 0.40 +1.7 496,815 + DDA3937_RS02240 0.40 +0.8 496,815 + DDA3937_RS02240 0.40 +2.3 497,014 + DDA3937_RS02240 0.60 -1.6 497,014 + DDA3937_RS02240 0.60 +1.1 497,015 - DDA3937_RS02240 0.61 -3.1 497,015 - DDA3937_RS02240 0.61 +1.1 497,015 - DDA3937_RS02240 0.61 -1.9 497,015 - DDA3937_RS02240 0.61 -2.6 497,100 + DDA3937_RS02240 0.69 +0.5 497,100 + DDA3937_RS02240 0.69 +2.5 497,100 + DDA3937_RS02240 0.69 -1.6 497,101 - DDA3937_RS02240 0.69 -1.9 497,101 - DDA3937_RS02240 0.69 +0.9 497,164 - DDA3937_RS02240 0.76 -2.4 497,164 - DDA3937_RS02240 0.76 -2.2 497,164 - DDA3937_RS02240 0.76 +2.5 497,164 - DDA3937_RS02240 0.76 +0.4 497,332 - -2.6 497,332 - +0.9 497,396 - -0.7 497,741 + DDA3937_RS02245 0.40 +1.5 497,742 - DDA3937_RS02245 0.40 -1.2 497,753 - DDA3937_RS02245 0.41 +1.5 497,875 + DDA3937_RS02245 0.55 -3.2 497,875 + DDA3937_RS02245 0.55 -1.2 497,875 + DDA3937_RS02245 0.55 +0.1 497,875 + DDA3937_RS02245 0.55 -1.3 497,876 - DDA3937_RS02245 0.56 -2.2 497,876 - DDA3937_RS02245 0.56 +0.2 497,876 - DDA3937_RS02245 0.56 -2.9 497,876 - DDA3937_RS02245 0.56 +0.1 497,888 + DDA3937_RS02245 0.57 -0.4 498,004 - DDA3937_RS02245 0.70 +0.6 498,020 - DDA3937_RS02245 0.72 -2.0 498,059 + DDA3937_RS02245 0.77 -2.3 498,059 + DDA3937_RS02245 0.77 -1.9 498,059 + DDA3937_RS02245 0.77 +1.9 498,060 - DDA3937_RS02245 0.77 +0.2 498,060 - DDA3937_RS02245 0.77 +1.0 498,060 - DDA3937_RS02245 0.77 -1.0 498,095 + DDA3937_RS02245 0.81 +0.1 498,095 + DDA3937_RS02245 0.81 -3.0 498,096 - DDA3937_RS02245 0.81 +0.4 498,096 - DDA3937_RS02245 0.81 +0.3 498,125 - DDA3937_RS02245 0.84 +0.4 498,162 + DDA3937_RS02245 0.89 -1.9 498,185 + +2.6 498,186 - -0.9 498,186 - -1.2 498,186 - -1.7 498,186 - -0.4 498,188 - +1.5 498,257 + +2.0 498,257 + -0.7 498,274 - -1.1 498,336 + -1.6 498,337 - -2.2
Or see this region's nucleotide sequence