Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02220 and DDA3937_RS02225 are separated by 594 nucleotides DDA3937_RS02225 and DDA3937_RS02230 are separated by 46 nucleotides DDA3937_RS02230 and DDA3937_RS02235 are separated by 9 nucleotides
DDA3937_RS02220: DDA3937_RS02220 - delta-endotoxin CytB, at 491,661 to 492,296
_RS02220
DDA3937_RS02225: DDA3937_RS02225 - ABC transporter substrate-binding protein, at 492,891 to 494,423
_RS02225
DDA3937_RS02230: DDA3937_RS02230 - ABC transporter permease, at 494,470 to 495,387
_RS02230
DDA3937_RS02235: DDA3937_RS02235 - ABC transporter permease, at 495,397 to 496,323
_RS02235
Position (kb) 492
493
494
495 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 491.918 kb on + strand, within DDA3937_RS02220 at 491.919 kb on - strand, within DDA3937_RS02220 at 491.953 kb on + strand, within DDA3937_RS02220 at 492.008 kb on + strand, within DDA3937_RS02220 at 492.075 kb on + strand, within DDA3937_RS02220 at 492.163 kb on - strand, within DDA3937_RS02220 at 492.194 kb on - strand, within DDA3937_RS02220 at 492.194 kb on - strand, within DDA3937_RS02220 at 492.214 kb on - strand, within DDA3937_RS02220 at 492.374 kb on + strand at 492.472 kb on - strand at 492.473 kb on + strand at 492.807 kb on - strand at 492.928 kb on + strand at 492.960 kb on + strand at 492.961 kb on - strand at 492.961 kb on - strand at 492.962 kb on + strand at 492.962 kb on + strand at 492.963 kb on - strand at 492.966 kb on + strand at 493.040 kb on + strand at 493.040 kb on + strand at 493.041 kb on - strand at 493.041 kb on - strand at 493.041 kb on - strand at 493.041 kb on - strand at 493.082 kb on + strand, within DDA3937_RS02225 at 493.091 kb on - strand, within DDA3937_RS02225 at 493.092 kb on + strand, within DDA3937_RS02225 at 493.093 kb on - strand, within DDA3937_RS02225 at 493.093 kb on - strand, within DDA3937_RS02225 at 493.116 kb on + strand, within DDA3937_RS02225 at 493.116 kb on + strand, within DDA3937_RS02225 at 493.119 kb on - strand, within DDA3937_RS02225 at 493.163 kb on - strand, within DDA3937_RS02225 at 493.163 kb on - strand, within DDA3937_RS02225 at 493.209 kb on - strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.234 kb on - strand, within DDA3937_RS02225 at 493.234 kb on - strand, within DDA3937_RS02225 at 493.234 kb on - strand, within DDA3937_RS02225 at 493.323 kb on + strand, within DDA3937_RS02225 at 493.324 kb on - strand, within DDA3937_RS02225 at 493.371 kb on + strand, within DDA3937_RS02225 at 493.395 kb on + strand, within DDA3937_RS02225 at 493.408 kb on - strand, within DDA3937_RS02225 at 493.521 kb on + strand, within DDA3937_RS02225 at 493.798 kb on - strand, within DDA3937_RS02225 at 493.848 kb on - strand, within DDA3937_RS02225 at 494.142 kb on + strand, within DDA3937_RS02225 at 494.187 kb on - strand, within DDA3937_RS02225 at 494.278 kb on - strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.314 kb on - strand at 494.314 kb on - strand at 494.314 kb on - strand at 494.314 kb on - strand at 494.316 kb on - strand at 494.316 kb on - strand at 494.316 kb on - strand at 494.335 kb on - strand at 494.347 kb on - strand at 494.355 kb on - strand at 494.355 kb on - strand at 494.355 kb on - strand at 494.355 kb on - strand at 494.355 kb on - strand at 494.421 kb on + strand at 494.421 kb on + strand at 494.422 kb on - strand at 494.457 kb on - strand at 494.469 kb on + strand at 494.470 kb on - strand at 494.479 kb on + strand at 494.480 kb on - strand at 494.495 kb on + strand at 494.521 kb on - strand at 494.842 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.077 kb on - strand, within DDA3937_RS02230 at 495.114 kb on + strand, within DDA3937_RS02230 at 495.115 kb on - strand, within DDA3937_RS02230 at 495.115 kb on - strand, within DDA3937_RS02230 at 495.319 kb on + strand at 495.320 kb on - strand at 495.385 kb on + strand at 495.385 kb on + strand at 495.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 491,918 + DDA3937_RS02220 0.40 -0.8 491,919 - DDA3937_RS02220 0.41 +0.4 491,953 + DDA3937_RS02220 0.46 -1.1 492,008 + DDA3937_RS02220 0.55 +0.7 492,075 + DDA3937_RS02220 0.65 -2.6 492,163 - DDA3937_RS02220 0.79 -3.3 492,194 - DDA3937_RS02220 0.84 -1.4 492,194 - DDA3937_RS02220 0.84 -2.1 492,214 - DDA3937_RS02220 0.87 -3.1 492,374 + -0.7 492,472 - -2.0 492,473 + -0.8 492,807 - -3.4 492,928 + +1.6 492,960 + -1.4 492,961 - -2.5 492,961 - +0.8 492,962 + -1.0 492,962 + -1.1 492,963 - +0.0 492,966 + +0.1 493,040 + -1.2 493,040 + -3.1 493,041 - -0.4 493,041 - -1.1 493,041 - -1.9 493,041 - -2.0 493,082 + DDA3937_RS02225 0.12 +0.3 493,091 - DDA3937_RS02225 0.13 +0.0 493,092 + DDA3937_RS02225 0.13 -2.8 493,093 - DDA3937_RS02225 0.13 -2.7 493,093 - DDA3937_RS02225 0.13 +1.3 493,116 + DDA3937_RS02225 0.15 -0.9 493,116 + DDA3937_RS02225 0.15 -1.2 493,119 - DDA3937_RS02225 0.15 -3.7 493,163 - DDA3937_RS02225 0.18 -2.5 493,163 - DDA3937_RS02225 0.18 -2.1 493,209 - DDA3937_RS02225 0.21 -3.3 493,233 + DDA3937_RS02225 0.22 +0.5 493,233 + DDA3937_RS02225 0.22 +0.9 493,233 + DDA3937_RS02225 0.22 -2.0 493,233 + DDA3937_RS02225 0.22 -2.2 493,233 + DDA3937_RS02225 0.22 -1.4 493,234 - DDA3937_RS02225 0.22 -0.8 493,234 - DDA3937_RS02225 0.22 -1.2 493,234 - DDA3937_RS02225 0.22 -4.1 493,323 + DDA3937_RS02225 0.28 -0.3 493,324 - DDA3937_RS02225 0.28 -2.7 493,371 + DDA3937_RS02225 0.31 -1.8 493,395 + DDA3937_RS02225 0.33 -3.0 493,408 - DDA3937_RS02225 0.34 +1.1 493,521 + DDA3937_RS02225 0.41 -0.2 493,798 - DDA3937_RS02225 0.59 -3.1 493,848 - DDA3937_RS02225 0.62 -1.0 494,142 + DDA3937_RS02225 0.82 -0.4 494,187 - DDA3937_RS02225 0.85 +0.1 494,278 - -1.8 494,313 + -2.4 494,313 + +1.1 494,313 + -2.4 494,313 + +0.0 494,313 + -1.1 494,313 + -2.6 494,314 - -3.2 494,314 - +0.4 494,314 - -1.4 494,314 - -1.7 494,316 - +1.6 494,316 - -1.0 494,316 - +2.8 494,335 - +2.1 494,347 - +0.6 494,355 - +4.4 494,355 - -0.3 494,355 - +1.0 494,355 - +0.6 494,355 - -0.9 494,421 + +0.6 494,421 + -1.0 494,422 - +0.0 494,457 - +2.4 494,469 + -2.8 494,470 - +0.2 494,479 + -0.4 494,480 - +0.6 494,495 + +1.1 494,521 - +2.3 494,842 - DDA3937_RS02230 0.41 +1.0 495,014 - DDA3937_RS02230 0.59 -0.0 495,014 - DDA3937_RS02230 0.59 +1.6 495,014 - DDA3937_RS02230 0.59 +0.3 495,077 - DDA3937_RS02230 0.66 -3.3 495,114 + DDA3937_RS02230 0.70 +0.6 495,115 - DDA3937_RS02230 0.70 -2.8 495,115 - DDA3937_RS02230 0.70 -2.7 495,319 + +3.1 495,320 - -1.7 495,385 + -2.4 495,385 + +0.7 495,386 - +1.5
Or see this region's nucleotide sequence