Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02130 and DDA3937_RS02135 are separated by 106 nucleotides DDA3937_RS02135 and DDA3937_RS02140 overlap by 4 nucleotides DDA3937_RS02140 and DDA3937_RS21785 are separated by 94 nucleotides DDA3937_RS21785 and DDA3937_RS02145 are separated by 59 nucleotides DDA3937_RS02145 and DDA3937_RS02150 overlap by 4 nucleotides
DDA3937_RS02130: DDA3937_RS02130 - PLP-dependent aminotransferase family protein, at 474,337 to 475,821
_RS02130
DDA3937_RS02135: DDA3937_RS02135 - GNAT family N-acetyltransferase, at 475,928 to 476,377
_RS02135
DDA3937_RS02140: DDA3937_RS02140 - carboxymuconolactone decarboxylase family protein, at 476,374 to 476,805
_RS02140
DDA3937_RS21785: DDA3937_RS21785 - MFS transporter, at 476,900 to 477,082
_RS21785
DDA3937_RS02145: DDA3937_RS02145 - DUF4276 family protein, at 477,142 to 477,765
_RS02145
DDA3937_RS02150: DDA3937_RS02150 - AAA family ATPase, at 477,762 to 478,922
_RS02150
Position (kb) 476
477 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 475.593 kb on + strand, within DDA3937_RS02130 at 475.620 kb on - strand, within DDA3937_RS02130 at 475.643 kb on + strand, within DDA3937_RS02130 at 475.696 kb on + strand at 475.696 kb on + strand at 475.723 kb on + strand at 475.724 kb on - strand at 475.760 kb on + strand at 475.825 kb on + strand at 475.826 kb on - strand at 475.826 kb on - strand at 475.826 kb on - strand at 475.839 kb on + strand at 475.839 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.881 kb on - strand at 475.907 kb on - strand at 475.914 kb on + strand at 475.915 kb on - strand at 475.957 kb on + strand at 475.958 kb on - strand at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.984 kb on + strand, within DDA3937_RS02135 at 475.985 kb on - strand, within DDA3937_RS02135 at 475.985 kb on - strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.043 kb on + strand, within DDA3937_RS02135 at 476.044 kb on - strand, within DDA3937_RS02135 at 476.044 kb on - strand, within DDA3937_RS02135 at 476.157 kb on - strand, within DDA3937_RS02135 at 476.157 kb on - strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.173 kb on - strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.229 kb on - strand, within DDA3937_RS02135 at 476.280 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.292 kb on + strand, within DDA3937_RS02135 at 476.345 kb on - strand at 476.371 kb on - strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.374 kb on - strand at 476.374 kb on - strand at 476.385 kb on - strand at 476.385 kb on - strand at 476.385 kb on - strand at 476.419 kb on + strand, within DDA3937_RS02140 at 476.419 kb on + strand, within DDA3937_RS02140 at 476.420 kb on - strand, within DDA3937_RS02140 at 476.480 kb on + strand, within DDA3937_RS02140 at 476.480 kb on + strand, within DDA3937_RS02140 at 476.481 kb on - strand, within DDA3937_RS02140 at 476.481 kb on - strand, within DDA3937_RS02140 at 476.491 kb on + strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.567 kb on + strand, within DDA3937_RS02140 at 476.567 kb on + strand, within DDA3937_RS02140 at 476.568 kb on - strand, within DDA3937_RS02140 at 476.568 kb on - strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.611 kb on - strand, within DDA3937_RS02140 at 476.700 kb on + strand, within DDA3937_RS02140 at 476.701 kb on - strand, within DDA3937_RS02140 at 476.881 kb on + strand at 476.882 kb on - strand at 476.908 kb on + strand at 476.908 kb on + strand at 476.908 kb on + strand at 477.069 kb on + strand at 477.070 kb on - strand at 477.090 kb on + strand at 477.133 kb on + strand at 477.133 kb on + strand at 477.133 kb on + strand at 477.134 kb on - strand at 477.134 kb on - strand at 477.134 kb on - strand at 477.134 kb on - strand at 477.137 kb on + strand at 477.138 kb on - strand at 477.138 kb on - strand at 477.153 kb on + strand at 477.153 kb on + strand at 477.153 kb on + strand at 477.153 kb on + strand at 477.154 kb on - strand at 477.154 kb on - strand at 477.154 kb on - strand at 477.154 kb on - strand at 477.154 kb on - strand at 477.154 kb on - strand at 477.163 kb on + strand at 477.163 kb on + strand at 477.163 kb on + strand at 477.163 kb on + strand at 477.164 kb on - strand at 477.164 kb on - strand at 477.171 kb on + strand at 477.174 kb on + strand at 477.206 kb on - strand, within DDA3937_RS02145 at 477.206 kb on - strand, within DDA3937_RS02145 at 477.206 kb on - strand, within DDA3937_RS02145 at 477.206 kb on - strand, within DDA3937_RS02145 at 477.232 kb on + strand, within DDA3937_RS02145 at 477.331 kb on + strand, within DDA3937_RS02145 at 477.331 kb on + strand, within DDA3937_RS02145 at 477.331 kb on + strand, within DDA3937_RS02145 at 477.331 kb on + strand, within DDA3937_RS02145 at 477.331 kb on + strand, within DDA3937_RS02145 at 477.332 kb on - strand, within DDA3937_RS02145 at 477.332 kb on - strand, within DDA3937_RS02145 at 477.332 kb on - strand, within DDA3937_RS02145 at 477.332 kb on - strand, within DDA3937_RS02145 at 477.332 kb on - strand, within DDA3937_RS02145 at 477.346 kb on + strand, within DDA3937_RS02145 at 477.346 kb on + strand, within DDA3937_RS02145 at 477.347 kb on - strand, within DDA3937_RS02145 at 477.347 kb on - strand, within DDA3937_RS02145 at 477.393 kb on + strand, within DDA3937_RS02145 at 477.394 kb on - strand, within DDA3937_RS02145 at 477.394 kb on - strand, within DDA3937_RS02145 at 477.394 kb on - strand, within DDA3937_RS02145 at 477.420 kb on + strand, within DDA3937_RS02145 at 477.421 kb on - strand, within DDA3937_RS02145 at 477.503 kb on - strand at 477.544 kb on + strand, within DDA3937_RS02145 at 477.545 kb on - strand, within DDA3937_RS02145 at 477.545 kb on - strand, within DDA3937_RS02145 at 477.621 kb on + strand, within DDA3937_RS02145 at 477.621 kb on + strand, within DDA3937_RS02145 at 477.621 kb on + strand, within DDA3937_RS02145 at 477.621 kb on + strand, within DDA3937_RS02145 at 477.621 kb on + strand, within DDA3937_RS02145 at 477.621 kb on + strand, within DDA3937_RS02145 at 477.621 kb on + strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.622 kb on - strand, within DDA3937_RS02145 at 477.623 kb on + strand, within DDA3937_RS02145 at 477.623 kb on + strand, within DDA3937_RS02145 at 477.623 kb on + strand, within DDA3937_RS02145 at 477.623 kb on + strand, within DDA3937_RS02145 at 477.623 kb on + strand, within DDA3937_RS02145 at 477.623 kb on + strand, within DDA3937_RS02145 at 477.623 kb on + strand, within DDA3937_RS02145 at 477.623 kb on + strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.624 kb on - strand, within DDA3937_RS02145 at 477.729 kb on + strand at 477.730 kb on - strand at 477.730 kb on - strand at 477.735 kb on + strand at 477.755 kb on + strand at 477.755 kb on + strand at 477.755 kb on + strand at 477.755 kb on + strand at 477.755 kb on + strand at 477.755 kb on + strand at 477.755 kb on + strand at 477.756 kb on - strand at 477.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 475,593 + DDA3937_RS02130 0.85 -0.7 475,620 - DDA3937_RS02130 0.86 -0.3 475,643 + DDA3937_RS02130 0.88 -1.6 475,696 + -0.8 475,696 + -2.4 475,723 + -0.7 475,724 - +2.7 475,760 + +0.0 475,825 + -1.9 475,826 - -0.7 475,826 - -1.0 475,826 - +1.1 475,839 + -1.0 475,839 + +1.2 475,846 + +1.5 475,846 + -0.4 475,846 + -0.4 475,846 + +1.8 475,847 - -2.4 475,847 - +1.5 475,847 - -1.0 475,880 + -0.5 475,880 + +1.4 475,880 + +1.4 475,880 + -0.7 475,881 - +0.3 475,907 - +1.7 475,914 + +0.2 475,915 - -1.0 475,957 + -0.6 475,958 - -1.2 475,974 + DDA3937_RS02135 0.10 -2.1 475,974 + DDA3937_RS02135 0.10 -1.5 475,974 + DDA3937_RS02135 0.10 -1.0 475,974 + DDA3937_RS02135 0.10 -0.4 475,984 + DDA3937_RS02135 0.12 +0.0 475,985 - DDA3937_RS02135 0.13 -3.4 475,985 - DDA3937_RS02135 0.13 -2.4 476,013 + DDA3937_RS02135 0.19 +1.1 476,013 + DDA3937_RS02135 0.19 +0.9 476,013 + DDA3937_RS02135 0.19 +2.9 476,043 + DDA3937_RS02135 0.26 -2.4 476,044 - DDA3937_RS02135 0.26 -2.3 476,044 - DDA3937_RS02135 0.26 -1.4 476,157 - DDA3937_RS02135 0.51 -0.3 476,157 - DDA3937_RS02135 0.51 -2.4 476,172 + DDA3937_RS02135 0.54 -1.2 476,172 + DDA3937_RS02135 0.54 -1.1 476,172 + DDA3937_RS02135 0.54 +2.1 476,172 + DDA3937_RS02135 0.54 -2.9 476,173 - DDA3937_RS02135 0.54 -3.3 476,228 + DDA3937_RS02135 0.67 +0.2 476,228 + DDA3937_RS02135 0.67 +0.6 476,228 + DDA3937_RS02135 0.67 +1.4 476,228 + DDA3937_RS02135 0.67 +1.1 476,228 + DDA3937_RS02135 0.67 +0.0 476,229 - DDA3937_RS02135 0.67 -1.4 476,280 + DDA3937_RS02135 0.78 -2.0 476,284 + DDA3937_RS02135 0.79 +0.8 476,284 + DDA3937_RS02135 0.79 +0.5 476,284 + DDA3937_RS02135 0.79 -1.4 476,284 + DDA3937_RS02135 0.79 +1.2 476,285 - DDA3937_RS02135 0.79 +0.9 476,285 - DDA3937_RS02135 0.79 -2.3 476,285 - DDA3937_RS02135 0.79 -2.2 476,292 + DDA3937_RS02135 0.81 -0.6 476,345 - -2.1 476,371 - -3.5 476,373 + +0.8 476,373 + -2.2 476,373 + +0.2 476,373 + +1.1 476,374 - -0.0 476,374 - +0.0 476,385 - -1.2 476,385 - -2.0 476,385 - -0.6 476,419 + DDA3937_RS02140 0.10 +0.8 476,419 + DDA3937_RS02140 0.10 -0.5 476,420 - DDA3937_RS02140 0.11 -2.0 476,480 + DDA3937_RS02140 0.25 -1.6 476,480 + DDA3937_RS02140 0.25 -0.1 476,481 - DDA3937_RS02140 0.25 -3.3 476,481 - DDA3937_RS02140 0.25 -2.8 476,491 + DDA3937_RS02140 0.27 +0.3 476,492 - DDA3937_RS02140 0.27 -0.8 476,492 - DDA3937_RS02140 0.27 -0.4 476,492 - DDA3937_RS02140 0.27 -0.3 476,492 - DDA3937_RS02140 0.27 -0.3 476,492 - DDA3937_RS02140 0.27 +0.2 476,567 + DDA3937_RS02140 0.45 -2.4 476,567 + DDA3937_RS02140 0.45 -0.7 476,568 - DDA3937_RS02140 0.45 -0.6 476,568 - DDA3937_RS02140 0.45 -1.2 476,610 + DDA3937_RS02140 0.55 +2.1 476,610 + DDA3937_RS02140 0.55 -1.2 476,610 + DDA3937_RS02140 0.55 +1.6 476,611 - DDA3937_RS02140 0.55 +0.4 476,700 + DDA3937_RS02140 0.75 +1.3 476,701 - DDA3937_RS02140 0.76 -2.1 476,881 + -2.1 476,882 - +0.4 476,908 + -0.8 476,908 + +0.8 476,908 + -1.9 477,069 + -2.7 477,070 - +1.3 477,090 + -0.8 477,133 + -1.8 477,133 + -0.6 477,133 + +1.4 477,134 - -2.9 477,134 - -4.3 477,134 - -1.8 477,134 - -1.2 477,137 + +0.9 477,138 - -0.5 477,138 - +0.9 477,153 + -1.0 477,153 + +2.3 477,153 + -1.7 477,153 + -1.0 477,154 - +1.8 477,154 - +0.0 477,154 - -1.0 477,154 - +1.1 477,154 - +0.7 477,154 - +0.9 477,163 + -0.7 477,163 + -2.1 477,163 + -2.1 477,163 + +2.7 477,164 - -3.6 477,164 - -1.2 477,171 + +0.7 477,174 + -1.2 477,206 - DDA3937_RS02145 0.10 +0.7 477,206 - DDA3937_RS02145 0.10 -1.0 477,206 - DDA3937_RS02145 0.10 +0.2 477,206 - DDA3937_RS02145 0.10 +0.2 477,232 + DDA3937_RS02145 0.14 -1.9 477,331 + DDA3937_RS02145 0.30 -2.0 477,331 + DDA3937_RS02145 0.30 +0.8 477,331 + DDA3937_RS02145 0.30 +1.6 477,331 + DDA3937_RS02145 0.30 +1.8 477,331 + DDA3937_RS02145 0.30 -2.4 477,332 - DDA3937_RS02145 0.30 +1.7 477,332 - DDA3937_RS02145 0.30 +0.3 477,332 - DDA3937_RS02145 0.30 +1.8 477,332 - DDA3937_RS02145 0.30 +0.0 477,332 - DDA3937_RS02145 0.30 -0.6 477,346 + DDA3937_RS02145 0.33 -2.5 477,346 + DDA3937_RS02145 0.33 -2.0 477,347 - DDA3937_RS02145 0.33 -2.2 477,347 - DDA3937_RS02145 0.33 -0.6 477,393 + DDA3937_RS02145 0.40 -0.1 477,394 - DDA3937_RS02145 0.40 -0.4 477,394 - DDA3937_RS02145 0.40 -2.6 477,394 - DDA3937_RS02145 0.40 +2.2 477,420 + DDA3937_RS02145 0.45 -0.6 477,421 - DDA3937_RS02145 0.45 +1.0 477,503 - +0.6 477,544 + DDA3937_RS02145 0.64 -0.8 477,545 - DDA3937_RS02145 0.65 +0.6 477,545 - DDA3937_RS02145 0.65 +0.0 477,621 + DDA3937_RS02145 0.77 -0.7 477,621 + DDA3937_RS02145 0.77 -0.3 477,621 + DDA3937_RS02145 0.77 -1.5 477,621 + DDA3937_RS02145 0.77 -2.5 477,621 + DDA3937_RS02145 0.77 -0.4 477,621 + DDA3937_RS02145 0.77 +1.4 477,621 + DDA3937_RS02145 0.77 -3.7 477,622 - DDA3937_RS02145 0.77 -0.3 477,622 - DDA3937_RS02145 0.77 +0.6 477,622 - DDA3937_RS02145 0.77 -1.1 477,622 - DDA3937_RS02145 0.77 +1.8 477,622 - DDA3937_RS02145 0.77 +0.5 477,622 - DDA3937_RS02145 0.77 -2.3 477,622 - DDA3937_RS02145 0.77 -0.0 477,622 - DDA3937_RS02145 0.77 +0.2 477,622 - DDA3937_RS02145 0.77 +0.1 477,623 + DDA3937_RS02145 0.77 -2.7 477,623 + DDA3937_RS02145 0.77 -0.1 477,623 + DDA3937_RS02145 0.77 -1.3 477,623 + DDA3937_RS02145 0.77 -2.3 477,623 + DDA3937_RS02145 0.77 -1.4 477,623 + DDA3937_RS02145 0.77 -0.7 477,623 + DDA3937_RS02145 0.77 +0.9 477,623 + DDA3937_RS02145 0.77 -2.2 477,624 - DDA3937_RS02145 0.77 -2.9 477,624 - DDA3937_RS02145 0.77 -3.1 477,624 - DDA3937_RS02145 0.77 -0.1 477,624 - DDA3937_RS02145 0.77 +2.6 477,624 - DDA3937_RS02145 0.77 -3.1 477,624 - DDA3937_RS02145 0.77 -2.2 477,624 - DDA3937_RS02145 0.77 +1.5 477,624 - DDA3937_RS02145 0.77 -3.0 477,624 - DDA3937_RS02145 0.77 +3.7 477,624 - DDA3937_RS02145 0.77 -2.8 477,624 - DDA3937_RS02145 0.77 -0.7 477,624 - DDA3937_RS02145 0.77 +0.6 477,624 - DDA3937_RS02145 0.77 -2.6 477,624 - DDA3937_RS02145 0.77 +0.3 477,624 - DDA3937_RS02145 0.77 +0.0 477,624 - DDA3937_RS02145 0.77 +1.3 477,624 - DDA3937_RS02145 0.77 +0.0 477,624 - DDA3937_RS02145 0.77 -0.1 477,624 - DDA3937_RS02145 0.77 -2.6 477,729 + -2.4 477,730 - -0.5 477,730 - -0.4 477,735 + -4.0 477,755 + -2.0 477,755 + -3.1 477,755 + -2.5 477,755 + -0.2 477,755 + -2.3 477,755 + -2.7 477,755 + +0.9 477,756 - -3.0 477,756 - -1.8
Or see this region's nucleotide sequence