Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01985 and DDA3937_RS01990 are separated by 13 nucleotides DDA3937_RS01990 and DDA3937_RS01995 are separated by 112 nucleotides DDA3937_RS01995 and DDA3937_RS02000 are separated by 283 nucleotides
DDA3937_RS01985: DDA3937_RS01985 - valine--tRNA ligase, at 443,874 to 446,732
_RS01985
DDA3937_RS01990: DDA3937_RS01990 - DNA polymerase III subunit chi, at 446,746 to 447,195
_RS01990
DDA3937_RS01995: DDA3937_RS01995 - leucyl aminopeptidase, at 447,308 to 448,816
_RS01995
DDA3937_RS02000: DDA3937_RS02000 - LPS export ABC transporter permease LptF, at 449,100 to 450,218
_RS02000
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1
2 at 447.231 kb on + strand at 447.231 kb on + strand at 447.232 kb on - strand at 447.232 kb on - strand at 447.438 kb on + strand at 447.845 kb on - strand, within DDA3937_RS01995 at 447.946 kb on - strand, within DDA3937_RS01995 at 448.059 kb on + strand, within DDA3937_RS01995 at 448.232 kb on - strand, within DDA3937_RS01995 at 448.404 kb on + strand, within DDA3937_RS01995 at 448.551 kb on + strand, within DDA3937_RS01995 at 448.615 kb on + strand, within DDA3937_RS01995 at 448.622 kb on + strand, within DDA3937_RS01995 at 448.623 kb on - strand, within DDA3937_RS01995 at 448.818 kb on + strand at 448.819 kb on - strand at 448.899 kb on - strand at 448.903 kb on + strand at 448.904 kb on - strand at 448.904 kb on - strand at 448.904 kb on - strand at 448.904 kb on - strand at 448.914 kb on - strand at 448.914 kb on - strand at 448.914 kb on - strand at 448.964 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 447,231 + -0.7 447,231 + +1.1 447,232 - -2.0 447,232 - -2.7 447,438 + +0.0 447,845 - DDA3937_RS01995 0.36 -0.7 447,946 - DDA3937_RS01995 0.42 -1.0 448,059 + DDA3937_RS01995 0.50 -2.2 448,232 - DDA3937_RS01995 0.61 -0.7 448,404 + DDA3937_RS01995 0.73 +2.3 448,551 + DDA3937_RS01995 0.82 +0.8 448,615 + DDA3937_RS01995 0.87 +0.5 448,622 + DDA3937_RS01995 0.87 -0.4 448,623 - DDA3937_RS01995 0.87 +0.9 448,818 + -1.2 448,819 - -1.2 448,899 - -1.0 448,903 + +0.0 448,904 - -0.4 448,904 - -1.4 448,904 - -1.4 448,904 - -0.7 448,914 - -1.2 448,914 - -2.3 448,914 - -2.2 448,964 + -1.4
Or see this region's nucleotide sequence