Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01950 and DDA3937_RS01955 are separated by 325 nucleotides DDA3937_RS01955 and DDA3937_RS01960 are separated by 39 nucleotides DDA3937_RS01960 and DDA3937_RS01965 are separated by 283 nucleotides
DDA3937_RS01950: DDA3937_RS01950 - GNAT family N-acetyltransferase, at 437,238 to 437,741
_RS01950
DDA3937_RS01955: DDA3937_RS01955 - helix-turn-helix domain-containing protein, at 438,067 to 438,654
_RS01955
DDA3937_RS01960: DDA3937_RS01960 - GNAT family N-acetyltransferase, at 438,694 to 439,176
_RS01960
DDA3937_RS01965: DDA3937_RS01965 - alpha/beta fold hydrolase, at 439,460 to 440,527
_RS01965
Position (kb) 438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.816 kb on + strand at 437.816 kb on + strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.828 kb on + strand at 437.828 kb on + strand at 437.828 kb on + strand at 437.829 kb on - strand at 437.829 kb on - strand at 437.829 kb on - strand at 437.832 kb on + strand at 437.832 kb on + strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.843 kb on - strand at 437.843 kb on - strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.848 kb on + strand at 437.848 kb on + strand at 437.881 kb on + strand at 438.079 kb on - strand at 438.271 kb on + strand, within DDA3937_RS01955 at 438.271 kb on + strand, within DDA3937_RS01955 at 438.279 kb on + strand, within DDA3937_RS01955 at 438.279 kb on + strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.388 kb on - strand, within DDA3937_RS01955 at 438.388 kb on - strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.584 kb on - strand, within DDA3937_RS01955 at 438.603 kb on + strand at 438.628 kb on + strand at 438.639 kb on + strand at 438.640 kb on - strand at 438.799 kb on - strand, within DDA3937_RS01960 at 438.834 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 439.096 kb on - strand, within DDA3937_RS01960 at 439.133 kb on - strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.135 kb on - strand at 439.174 kb on + strand at 439.174 kb on + strand at 439.178 kb on + strand at 439.192 kb on - strand at 439.210 kb on + strand at 439.210 kb on + strand at 439.211 kb on - strand at 439.309 kb on + strand at 439.310 kb on - strand at 439.310 kb on - strand at 439.323 kb on - strand at 439.323 kb on - strand at 439.327 kb on + strand at 439.327 kb on + strand at 439.328 kb on - strand at 439.329 kb on + strand at 439.330 kb on - strand at 439.358 kb on - strand at 439.359 kb on + strand at 439.405 kb on + strand at 439.406 kb on - strand at 439.418 kb on - strand at 439.437 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.459 kb on + strand at 439.460 kb on - strand at 439.460 kb on - strand at 439.539 kb on + strand at 439.540 kb on - strand at 439.540 kb on - strand at 439.612 kb on + strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.622 kb on + strand, within DDA3937_RS01965 at 439.623 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand at 439.640 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand, within DDA3937_RS01965 at 439.653 kb on + strand, within DDA3937_RS01965 at 439.672 kb on + strand, within DDA3937_RS01965 at 439.692 kb on + strand, within DDA3937_RS01965 at 439.693 kb on - strand, within DDA3937_RS01965 at 439.719 kb on + strand, within DDA3937_RS01965 at 439.720 kb on - strand, within DDA3937_RS01965 at 439.765 kb on + strand, within DDA3937_RS01965 at 439.765 kb on + strand, within DDA3937_RS01965 at 439.766 kb on - strand, within DDA3937_RS01965 at 439.822 kb on + strand, within DDA3937_RS01965 at 439.835 kb on + strand, within DDA3937_RS01965 at 439.835 kb on + strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.894 kb on + strand, within DDA3937_RS01965 at 439.895 kb on - strand, within DDA3937_RS01965 at 439.939 kb on + strand, within DDA3937_RS01965 at 439.939 kb on + strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 440.090 kb on + strand, within DDA3937_RS01965 at 440.090 kb on + strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.134 kb on + strand, within DDA3937_RS01965 at 440.134 kb on + strand, within DDA3937_RS01965 at 440.135 kb on - strand at 440.135 kb on - strand, within DDA3937_RS01965 at 440.156 kb on - strand, within DDA3937_RS01965 at 440.166 kb on - strand, within DDA3937_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 437,812 + +1.6 437,812 + +0.6 437,812 + -3.2 437,812 + +0.0 437,812 + -0.7 437,812 + -3.2 437,813 - -1.4 437,813 - -1.2 437,813 - -1.8 437,813 - +0.4 437,813 - -0.9 437,816 + +0.2 437,816 + -1.0 437,817 - -1.0 437,817 - +0.6 437,817 - -2.2 437,817 - -0.7 437,828 + -3.3 437,828 + -3.4 437,828 + -1.0 437,829 - -1.6 437,829 - -1.7 437,829 - -0.9 437,832 + +2.2 437,832 + +2.0 437,833 - -1.8 437,833 - -1.5 437,833 - +0.6 437,833 - -4.3 437,833 - +0.8 437,843 - +2.5 437,843 - +2.3 437,844 + -2.3 437,844 + -0.7 437,844 + +0.0 437,844 + -0.9 437,844 + -2.0 437,844 + -2.1 437,844 + -0.1 437,844 + +0.7 437,844 + +1.5 437,844 + +0.2 437,844 + -3.0 437,844 + +0.0 437,845 - -3.1 437,845 - +0.1 437,845 - -2.8 437,845 - -0.1 437,845 - +0.8 437,845 - -2.3 437,845 - +1.1 437,845 - -1.1 437,848 + +1.0 437,848 + +0.2 437,881 + -1.3 438,079 - -4.1 438,271 + DDA3937_RS01955 0.35 +3.3 438,271 + DDA3937_RS01955 0.35 -1.7 438,279 + DDA3937_RS01955 0.36 -2.5 438,279 + DDA3937_RS01955 0.36 -3.0 438,280 - DDA3937_RS01955 0.36 +0.5 438,280 - DDA3937_RS01955 0.36 -2.0 438,280 - DDA3937_RS01955 0.36 -1.4 438,280 - DDA3937_RS01955 0.36 -2.9 438,388 - DDA3937_RS01955 0.55 -2.0 438,388 - DDA3937_RS01955 0.55 -2.8 438,499 + DDA3937_RS01955 0.73 -0.3 438,499 + DDA3937_RS01955 0.73 -3.7 438,499 + DDA3937_RS01955 0.73 -1.7 438,499 + DDA3937_RS01955 0.73 -0.0 438,499 + DDA3937_RS01955 0.73 -2.2 438,500 - DDA3937_RS01955 0.74 -0.0 438,500 - DDA3937_RS01955 0.74 -2.5 438,500 - DDA3937_RS01955 0.74 -2.1 438,500 - DDA3937_RS01955 0.74 -0.2 438,500 - DDA3937_RS01955 0.74 -0.7 438,500 - DDA3937_RS01955 0.74 +0.1 438,500 - DDA3937_RS01955 0.74 +1.4 438,584 - DDA3937_RS01955 0.88 -0.2 438,603 + -0.4 438,628 + +1.6 438,639 + -1.5 438,640 - +1.1 438,799 - DDA3937_RS01960 0.22 -3.1 438,834 - DDA3937_RS01960 0.29 -1.0 438,843 - DDA3937_RS01960 0.31 -1.7 438,843 - DDA3937_RS01960 0.31 -0.9 439,096 - DDA3937_RS01960 0.83 -1.1 439,133 - +2.0 439,134 + -0.7 439,134 + -0.9 439,134 + +1.0 439,134 + -0.5 439,135 - +2.1 439,174 + +0.9 439,174 + +1.4 439,178 + -2.4 439,192 - -1.7 439,210 + -2.2 439,210 + +1.6 439,211 - +1.8 439,309 + +1.2 439,310 - -0.7 439,310 - -0.5 439,323 - -1.9 439,323 - +0.0 439,327 + +0.2 439,327 + -0.9 439,328 - -3.6 439,329 + +0.9 439,330 - -2.4 439,358 - -3.4 439,359 + -0.5 439,405 + -1.8 439,406 - -1.8 439,418 - -0.4 439,437 + -0.9 439,443 + -0.4 439,443 + -0.5 439,443 + +0.2 439,459 + -1.2 439,460 - +0.2 439,460 - +0.4 439,539 + -1.2 439,540 - -0.3 439,540 - -0.8 439,612 + DDA3937_RS01965 0.14 -1.1 439,620 - DDA3937_RS01965 0.15 -3.2 439,620 - DDA3937_RS01965 0.15 -1.1 439,622 + DDA3937_RS01965 0.15 +1.1 439,623 - DDA3937_RS01965 0.15 -2.9 439,640 - -0.4 439,640 - DDA3937_RS01965 0.17 +0.3 439,640 - DDA3937_RS01965 0.17 +0.5 439,653 + DDA3937_RS01965 0.18 +0.9 439,672 + DDA3937_RS01965 0.20 -0.5 439,692 + DDA3937_RS01965 0.22 +0.9 439,693 - DDA3937_RS01965 0.22 -3.5 439,719 + DDA3937_RS01965 0.24 -2.4 439,720 - DDA3937_RS01965 0.24 -4.6 439,765 + DDA3937_RS01965 0.29 +0.2 439,765 + DDA3937_RS01965 0.29 -3.9 439,766 - DDA3937_RS01965 0.29 -1.2 439,822 + DDA3937_RS01965 0.34 +0.3 439,835 + DDA3937_RS01965 0.35 -1.7 439,835 + DDA3937_RS01965 0.35 +0.7 439,836 - DDA3937_RS01965 0.35 +0.8 439,836 - DDA3937_RS01965 0.35 -1.0 439,836 - DDA3937_RS01965 0.35 -1.0 439,836 - DDA3937_RS01965 0.35 -3.1 439,836 - DDA3937_RS01965 0.35 -0.7 439,837 + DDA3937_RS01965 0.35 +1.4 439,837 + DDA3937_RS01965 0.35 -2.7 439,837 + DDA3937_RS01965 0.35 +0.6 439,837 + DDA3937_RS01965 0.35 +0.2 439,837 + DDA3937_RS01965 0.35 -0.2 439,837 + DDA3937_RS01965 0.35 -3.4 439,837 + DDA3937_RS01965 0.35 -1.8 439,837 + DDA3937_RS01965 0.35 -1.5 439,838 - DDA3937_RS01965 0.35 +0.5 439,838 - DDA3937_RS01965 0.35 -1.5 439,838 - DDA3937_RS01965 0.35 +1.3 439,841 + DDA3937_RS01965 0.36 -1.3 439,841 + DDA3937_RS01965 0.36 -2.0 439,841 + DDA3937_RS01965 0.36 +1.6 439,842 - DDA3937_RS01965 0.36 -3.1 439,842 - DDA3937_RS01965 0.36 -1.6 439,842 - DDA3937_RS01965 0.36 -1.8 439,842 - DDA3937_RS01965 0.36 +0.2 439,894 + DDA3937_RS01965 0.41 -0.8 439,895 - DDA3937_RS01965 0.41 +1.5 439,939 + DDA3937_RS01965 0.45 -0.7 439,939 + DDA3937_RS01965 0.45 +1.1 439,940 - DDA3937_RS01965 0.45 -0.4 439,940 - DDA3937_RS01965 0.45 -2.5 439,940 - DDA3937_RS01965 0.45 -2.1 440,090 + DDA3937_RS01965 0.59 -3.4 440,090 + DDA3937_RS01965 0.59 -3.9 440,091 - DDA3937_RS01965 0.59 -1.8 440,091 - DDA3937_RS01965 0.59 -0.3 440,091 - DDA3937_RS01965 0.59 -2.1 440,134 + DDA3937_RS01965 0.63 +0.2 440,134 + DDA3937_RS01965 0.63 -0.5 440,135 - +1.6 440,135 - DDA3937_RS01965 0.63 -3.4 440,156 - DDA3937_RS01965 0.65 -1.7 440,166 - DDA3937_RS01965 0.66 +1.2
Or see this region's nucleotide sequence