Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01755 and DDA3937_RS01760 overlap by 1 nucleotides DDA3937_RS01760 and DDA3937_RS01765 are separated by 186 nucleotides
DDA3937_RS01755: DDA3937_RS01755 - 3',5'-cyclic-AMP phosphodiesterase, at 388,465 to 389,292
_RS01755
DDA3937_RS01760: DDA3937_RS01760 - esterase YqiA, at 389,292 to 389,873
_RS01760
DDA3937_RS01765: DDA3937_RS01765 - DNA topoisomerase IV subunit B, at 390,060 to 391,955
_RS01765
Position (kb) 389
390 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 388.353 kb on - strand at 388.410 kb on + strand at 388.410 kb on + strand at 388.411 kb on - strand at 388.419 kb on + strand at 388.419 kb on + strand at 388.420 kb on - strand at 388.420 kb on - strand at 388.420 kb on - strand at 388.420 kb on - strand at 388.421 kb on + strand at 388.421 kb on + strand at 388.421 kb on + strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.435 kb on - strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.518 kb on - strand at 388.523 kb on + strand at 388.524 kb on - strand at 388.524 kb on - strand at 388.524 kb on - strand at 388.524 kb on - strand at 388.530 kb on + strand at 388.531 kb on - strand at 388.575 kb on + strand, within DDA3937_RS01755 at 388.575 kb on + strand, within DDA3937_RS01755 at 388.575 kb on + strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.579 kb on + strand, within DDA3937_RS01755 at 388.579 kb on + strand, within DDA3937_RS01755 at 388.588 kb on + strand, within DDA3937_RS01755 at 388.589 kb on - strand, within DDA3937_RS01755 at 388.642 kb on - strand, within DDA3937_RS01755 at 388.671 kb on + strand, within DDA3937_RS01755 at 388.671 kb on + strand, within DDA3937_RS01755 at 388.672 kb on - strand, within DDA3937_RS01755 at 388.684 kb on + strand, within DDA3937_RS01755 at 388.684 kb on + strand, within DDA3937_RS01755 at 388.684 kb on + strand, within DDA3937_RS01755 at 388.684 kb on + strand, within DDA3937_RS01755 at 388.685 kb on - strand, within DDA3937_RS01755 at 388.685 kb on - strand, within DDA3937_RS01755 at 388.685 kb on - strand, within DDA3937_RS01755 at 388.685 kb on - strand, within DDA3937_RS01755 at 388.705 kb on - strand, within DDA3937_RS01755 at 388.717 kb on - strand, within DDA3937_RS01755 at 388.936 kb on + strand, within DDA3937_RS01755 at 388.938 kb on + strand, within DDA3937_RS01755 at 388.938 kb on + strand, within DDA3937_RS01755 at 388.938 kb on + strand, within DDA3937_RS01755 at 388.939 kb on - strand, within DDA3937_RS01755 at 388.939 kb on - strand, within DDA3937_RS01755 at 388.939 kb on - strand, within DDA3937_RS01755 at 388.939 kb on - strand, within DDA3937_RS01755 at 388.980 kb on + strand, within DDA3937_RS01755 at 388.981 kb on - strand, within DDA3937_RS01755 at 389.073 kb on + strand, within DDA3937_RS01755 at 389.073 kb on + strand, within DDA3937_RS01755 at 389.073 kb on + strand, within DDA3937_RS01755 at 389.073 kb on + strand, within DDA3937_RS01755 at 389.073 kb on + strand, within DDA3937_RS01755 at 389.074 kb on - strand, within DDA3937_RS01755 at 389.074 kb on - strand, within DDA3937_RS01755 at 389.074 kb on - strand, within DDA3937_RS01755 at 389.074 kb on - strand, within DDA3937_RS01755 at 389.166 kb on + strand, within DDA3937_RS01755 at 389.166 kb on + strand, within DDA3937_RS01755 at 389.166 kb on + strand, within DDA3937_RS01755 at 389.166 kb on + strand, within DDA3937_RS01755 at 389.167 kb on - strand, within DDA3937_RS01755 at 389.167 kb on - strand, within DDA3937_RS01755 at 389.175 kb on + strand, within DDA3937_RS01755 at 389.175 kb on + strand, within DDA3937_RS01755 at 389.175 kb on + strand, within DDA3937_RS01755 at 389.175 kb on + strand, within DDA3937_RS01755 at 389.176 kb on - strand, within DDA3937_RS01755 at 389.197 kb on + strand, within DDA3937_RS01755 at 389.225 kb on + strand at 389.226 kb on - strand at 389.271 kb on + strand at 389.271 kb on + strand at 389.307 kb on + strand at 389.308 kb on - strand at 389.308 kb on - strand at 389.393 kb on + strand, within DDA3937_RS01760 at 389.393 kb on + strand, within DDA3937_RS01760 at 389.393 kb on + strand, within DDA3937_RS01760 at 389.394 kb on - strand, within DDA3937_RS01760 at 389.394 kb on - strand, within DDA3937_RS01760 at 389.394 kb on - strand, within DDA3937_RS01760 at 389.511 kb on + strand, within DDA3937_RS01760 at 389.512 kb on - strand, within DDA3937_RS01760 at 389.512 kb on - strand, within DDA3937_RS01760 at 389.577 kb on + strand, within DDA3937_RS01760 at 389.578 kb on - strand, within DDA3937_RS01760 at 389.620 kb on - strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.634 kb on + strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.635 kb on - strand, within DDA3937_RS01760 at 389.642 kb on - strand, within DDA3937_RS01760 at 389.658 kb on + strand, within DDA3937_RS01760 at 389.658 kb on + strand, within DDA3937_RS01760 at 389.658 kb on + strand, within DDA3937_RS01760 at 389.658 kb on + strand, within DDA3937_RS01760 at 389.659 kb on - strand, within DDA3937_RS01760 at 389.745 kb on + strand, within DDA3937_RS01760 at 389.745 kb on + strand, within DDA3937_RS01760 at 389.763 kb on + strand, within DDA3937_RS01760 at 389.763 kb on + strand, within DDA3937_RS01760 at 389.764 kb on - strand, within DDA3937_RS01760 at 389.766 kb on + strand, within DDA3937_RS01760 at 389.766 kb on + strand, within DDA3937_RS01760 at 389.766 kb on + strand, within DDA3937_RS01760 at 389.767 kb on - strand, within DDA3937_RS01760 at 389.767 kb on - strand, within DDA3937_RS01760 at 389.767 kb on - strand, within DDA3937_RS01760 at 389.767 kb on - strand, within DDA3937_RS01760 at 389.767 kb on - strand, within DDA3937_RS01760 at 389.801 kb on + strand, within DDA3937_RS01760 at 389.829 kb on + strand at 389.830 kb on - strand at 389.830 kb on - strand at 389.830 kb on - strand at 389.931 kb on - strand at 389.955 kb on + strand at 389.955 kb on + strand at 390.006 kb on + strand at 390.006 kb on + strand at 390.006 kb on + strand at 390.007 kb on - strand at 390.007 kb on - strand at 390.007 kb on - strand at 390.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 388,353 - +0.6 388,410 + -1.7 388,410 + +2.4 388,411 - -1.2 388,419 + +0.3 388,419 + +1.7 388,420 - -2.8 388,420 - -0.4 388,420 - -3.3 388,420 - -0.7 388,421 + -0.7 388,421 + +0.4 388,421 + -3.9 388,422 - -1.0 388,422 - -2.9 388,422 - -1.4 388,422 - -1.9 388,422 - -0.5 388,422 - -2.2 388,422 - -0.2 388,422 - -0.6 388,422 - -1.3 388,435 - -1.3 388,462 + -0.9 388,462 + -3.0 388,462 + +1.4 388,462 + -2.5 388,462 + -2.0 388,462 + -0.3 388,462 + -1.8 388,463 - -3.1 388,463 - -0.4 388,463 - -1.9 388,463 - -2.9 388,463 - -1.0 388,463 - -2.2 388,518 - -3.6 388,523 + -2.4 388,524 - -2.1 388,524 - -1.9 388,524 - -2.9 388,524 - -2.6 388,530 + -3.0 388,531 - +0.3 388,575 + DDA3937_RS01755 0.13 -3.4 388,575 + DDA3937_RS01755 0.13 -0.9 388,575 + DDA3937_RS01755 0.13 -3.3 388,576 - DDA3937_RS01755 0.13 +0.8 388,576 - DDA3937_RS01755 0.13 -1.0 388,576 - DDA3937_RS01755 0.13 -2.1 388,576 - -0.7 388,576 - DDA3937_RS01755 0.13 -0.7 388,576 - DDA3937_RS01755 0.13 +1.1 388,576 - DDA3937_RS01755 0.13 -2.1 388,579 + DDA3937_RS01755 0.14 -2.1 388,579 + DDA3937_RS01755 0.14 -0.3 388,588 + DDA3937_RS01755 0.15 -0.4 388,589 - DDA3937_RS01755 0.15 -4.4 388,642 - DDA3937_RS01755 0.21 -3.1 388,671 + DDA3937_RS01755 0.25 -4.4 388,671 + DDA3937_RS01755 0.25 -2.1 388,672 - DDA3937_RS01755 0.25 -2.6 388,684 + DDA3937_RS01755 0.26 -2.5 388,684 + DDA3937_RS01755 0.26 -1.8 388,684 + DDA3937_RS01755 0.26 -1.8 388,684 + DDA3937_RS01755 0.26 -2.7 388,685 - DDA3937_RS01755 0.27 -1.0 388,685 - DDA3937_RS01755 0.27 -0.7 388,685 - DDA3937_RS01755 0.27 -0.7 388,685 - DDA3937_RS01755 0.27 -1.8 388,705 - DDA3937_RS01755 0.29 -0.7 388,717 - DDA3937_RS01755 0.30 -3.5 388,936 + DDA3937_RS01755 0.57 -2.0 388,938 + DDA3937_RS01755 0.57 -1.9 388,938 + DDA3937_RS01755 0.57 -2.6 388,938 + DDA3937_RS01755 0.57 -2.8 388,939 - DDA3937_RS01755 0.57 +0.2 388,939 - DDA3937_RS01755 0.57 -2.4 388,939 - DDA3937_RS01755 0.57 -3.1 388,939 - DDA3937_RS01755 0.57 -0.5 388,980 + DDA3937_RS01755 0.62 -1.3 388,981 - DDA3937_RS01755 0.62 -2.1 389,073 + DDA3937_RS01755 0.73 +0.6 389,073 + DDA3937_RS01755 0.73 -1.4 389,073 + DDA3937_RS01755 0.73 -1.0 389,073 + DDA3937_RS01755 0.73 -2.9 389,073 + DDA3937_RS01755 0.73 -2.4 389,074 - DDA3937_RS01755 0.74 -1.9 389,074 - DDA3937_RS01755 0.74 -2.6 389,074 - DDA3937_RS01755 0.74 -2.3 389,074 - DDA3937_RS01755 0.74 -0.0 389,166 + DDA3937_RS01755 0.85 -2.6 389,166 + DDA3937_RS01755 0.85 -0.7 389,166 + DDA3937_RS01755 0.85 -0.6 389,166 + DDA3937_RS01755 0.85 -2.3 389,167 - DDA3937_RS01755 0.85 -1.5 389,167 - DDA3937_RS01755 0.85 -2.8 389,175 + DDA3937_RS01755 0.86 -2.7 389,175 + DDA3937_RS01755 0.86 -0.1 389,175 + DDA3937_RS01755 0.86 -3.9 389,175 + DDA3937_RS01755 0.86 -1.1 389,176 - DDA3937_RS01755 0.86 -4.1 389,197 + DDA3937_RS01755 0.88 -0.7 389,225 + -2.6 389,226 - -2.7 389,271 + -1.6 389,271 + -1.0 389,307 + -1.3 389,308 - -3.6 389,308 - +0.6 389,393 + DDA3937_RS01760 0.17 +1.3 389,393 + DDA3937_RS01760 0.17 -0.9 389,393 + DDA3937_RS01760 0.17 -3.0 389,394 - DDA3937_RS01760 0.18 +1.3 389,394 - DDA3937_RS01760 0.18 -2.4 389,394 - DDA3937_RS01760 0.18 -2.9 389,511 + DDA3937_RS01760 0.38 -0.5 389,512 - DDA3937_RS01760 0.38 -0.1 389,512 - DDA3937_RS01760 0.38 +1.7 389,577 + DDA3937_RS01760 0.49 +1.1 389,578 - DDA3937_RS01760 0.49 +0.6 389,620 - DDA3937_RS01760 0.56 +1.9 389,634 + DDA3937_RS01760 0.59 -1.4 389,634 + DDA3937_RS01760 0.59 +0.0 389,634 + DDA3937_RS01760 0.59 -2.0 389,634 + DDA3937_RS01760 0.59 -2.0 389,634 + DDA3937_RS01760 0.59 +2.1 389,634 + DDA3937_RS01760 0.59 -0.7 389,634 + DDA3937_RS01760 0.59 +1.6 389,634 + DDA3937_RS01760 0.59 +1.6 389,634 + DDA3937_RS01760 0.59 -0.7 389,634 + DDA3937_RS01760 0.59 -2.8 389,634 + DDA3937_RS01760 0.59 +0.7 389,635 - DDA3937_RS01760 0.59 -0.8 389,635 - DDA3937_RS01760 0.59 +1.3 389,635 - DDA3937_RS01760 0.59 -1.6 389,635 - DDA3937_RS01760 0.59 +1.9 389,635 - DDA3937_RS01760 0.59 +2.0 389,635 - DDA3937_RS01760 0.59 -2.0 389,635 - DDA3937_RS01760 0.59 -2.9 389,635 - DDA3937_RS01760 0.59 +1.6 389,635 - DDA3937_RS01760 0.59 +1.4 389,635 - DDA3937_RS01760 0.59 -1.0 389,635 - DDA3937_RS01760 0.59 -1.7 389,635 - DDA3937_RS01760 0.59 +1.9 389,635 - DDA3937_RS01760 0.59 +1.6 389,635 - DDA3937_RS01760 0.59 +0.7 389,635 - DDA3937_RS01760 0.59 -1.4 389,642 - DDA3937_RS01760 0.60 -0.9 389,658 + DDA3937_RS01760 0.63 -0.2 389,658 + DDA3937_RS01760 0.63 -1.2 389,658 + DDA3937_RS01760 0.63 -0.1 389,658 + DDA3937_RS01760 0.63 +1.5 389,659 - DDA3937_RS01760 0.63 +0.1 389,745 + DDA3937_RS01760 0.78 -0.7 389,745 + DDA3937_RS01760 0.78 +1.1 389,763 + DDA3937_RS01760 0.81 -2.0 389,763 + DDA3937_RS01760 0.81 +1.0 389,764 - DDA3937_RS01760 0.81 +3.5 389,766 + DDA3937_RS01760 0.81 -0.2 389,766 + DDA3937_RS01760 0.81 +0.6 389,766 + DDA3937_RS01760 0.81 -1.9 389,767 - DDA3937_RS01760 0.82 -3.9 389,767 - DDA3937_RS01760 0.82 +0.5 389,767 - DDA3937_RS01760 0.82 -1.7 389,767 - DDA3937_RS01760 0.82 -1.2 389,767 - DDA3937_RS01760 0.82 -2.9 389,801 + DDA3937_RS01760 0.87 +0.4 389,829 + -1.6 389,830 - +2.3 389,830 - -3.2 389,830 - +1.6 389,931 - -3.0 389,955 + -0.0 389,955 + -2.8 390,006 + -1.2 390,006 + -0.7 390,006 + -1.4 390,007 - +0.0 390,007 - -0.1 390,007 - -2.9 390,007 - -2.9
Or see this region's nucleotide sequence