Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01600 and DDA3937_RS01605 are separated by 88 nucleotides DDA3937_RS01605 and DDA3937_RS01610 are separated by 236 nucleotides DDA3937_RS01610 and DDA3937_RS01615 are separated by 210 nucleotides
DDA3937_RS01600: DDA3937_RS01600 - outer membrane-stress sensor serine endopeptidase DegS, at 352,117 to 353,178
_RS01600
DDA3937_RS01605: DDA3937_RS01605 - serine endoprotease DegQ, at 353,267 to 354,637
_RS01605
DDA3937_RS01610: DDA3937_RS01610 - DUF1043 family protein, at 354,874 to 355,278
_RS01610
DDA3937_RS01615: DDA3937_RS01615 - cell division protein ZapE, at 355,489 to 356,619
_RS01615
Position (kb) 353
354
355 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 352.321 kb on + strand, within DDA3937_RS01600 at 352.407 kb on + strand, within DDA3937_RS01600 at 352.408 kb on - strand, within DDA3937_RS01600 at 352.408 kb on - strand, within DDA3937_RS01600 at 352.408 kb on - strand, within DDA3937_RS01600 at 352.409 kb on + strand, within DDA3937_RS01600 at 352.409 kb on + strand, within DDA3937_RS01600 at 352.409 kb on + strand, within DDA3937_RS01600 at 352.409 kb on + strand, within DDA3937_RS01600 at 352.409 kb on + strand, within DDA3937_RS01600 at 352.410 kb on - strand, within DDA3937_RS01600 at 352.410 kb on - strand, within DDA3937_RS01600 at 352.410 kb on - strand, within DDA3937_RS01600 at 352.410 kb on - strand, within DDA3937_RS01600 at 352.420 kb on + strand at 352.421 kb on - strand, within DDA3937_RS01600 at 352.438 kb on + strand, within DDA3937_RS01600 at 352.438 kb on + strand, within DDA3937_RS01600 at 352.438 kb on + strand, within DDA3937_RS01600 at 352.439 kb on - strand, within DDA3937_RS01600 at 352.512 kb on + strand, within DDA3937_RS01600 at 352.518 kb on + strand, within DDA3937_RS01600 at 352.697 kb on + strand, within DDA3937_RS01600 at 352.697 kb on + strand, within DDA3937_RS01600 at 352.697 kb on + strand, within DDA3937_RS01600 at 352.698 kb on - strand, within DDA3937_RS01600 at 352.896 kb on + strand, within DDA3937_RS01600 at 352.896 kb on + strand, within DDA3937_RS01600 at 352.910 kb on + strand, within DDA3937_RS01600 at 352.911 kb on - strand, within DDA3937_RS01600 at 352.957 kb on + strand, within DDA3937_RS01600 at 352.958 kb on - strand, within DDA3937_RS01600 at 352.958 kb on - strand, within DDA3937_RS01600 at 352.958 kb on - strand, within DDA3937_RS01600 at 352.994 kb on + strand, within DDA3937_RS01600 at 352.994 kb on + strand, within DDA3937_RS01600 at 352.994 kb on + strand, within DDA3937_RS01600 at 352.995 kb on - strand, within DDA3937_RS01600 at 352.996 kb on + strand, within DDA3937_RS01600 at 352.996 kb on + strand, within DDA3937_RS01600 at 352.996 kb on + strand, within DDA3937_RS01600 at 352.996 kb on + strand, within DDA3937_RS01600 at 352.996 kb on + strand, within DDA3937_RS01600 at 352.997 kb on - strand, within DDA3937_RS01600 at 352.997 kb on - strand, within DDA3937_RS01600 at 352.997 kb on - strand, within DDA3937_RS01600 at 352.997 kb on - strand, within DDA3937_RS01600 at 353.036 kb on + strand, within DDA3937_RS01600 at 353.037 kb on - strand, within DDA3937_RS01600 at 353.037 kb on - strand, within DDA3937_RS01600 at 353.039 kb on + strand, within DDA3937_RS01600 at 353.039 kb on + strand, within DDA3937_RS01600 at 353.040 kb on - strand, within DDA3937_RS01600 at 353.040 kb on - strand, within DDA3937_RS01600 at 353.040 kb on - strand, within DDA3937_RS01600 at 353.040 kb on - strand, within DDA3937_RS01600 at 353.161 kb on + strand at 353.162 kb on - strand at 353.193 kb on + strand at 353.193 kb on + strand at 353.193 kb on + strand at 353.193 kb on + strand at 353.193 kb on + strand at 353.194 kb on - strand at 353.195 kb on + strand at 353.195 kb on + strand at 353.195 kb on + strand at 353.196 kb on - strand at 353.217 kb on + strand at 353.268 kb on + strand at 353.269 kb on - strand at 353.283 kb on + strand at 353.283 kb on + strand at 353.283 kb on + strand at 353.283 kb on + strand at 353.283 kb on + strand at 353.283 kb on + strand at 353.284 kb on - strand at 353.284 kb on - strand at 353.284 kb on - strand at 353.284 kb on - strand at 353.284 kb on - strand at 353.308 kb on + strand at 353.308 kb on + strand at 353.309 kb on - strand at 353.396 kb on - strand at 353.396 kb on - strand at 353.396 kb on - strand at 353.398 kb on + strand at 353.398 kb on + strand at 353.399 kb on - strand at 353.449 kb on + strand, within DDA3937_RS01605 at 353.449 kb on + strand, within DDA3937_RS01605 at 353.480 kb on - strand, within DDA3937_RS01605 at 353.480 kb on - strand, within DDA3937_RS01605 at 353.480 kb on - strand, within DDA3937_RS01605 at 353.527 kb on + strand, within DDA3937_RS01605 at 353.528 kb on - strand, within DDA3937_RS01605 at 353.612 kb on + strand, within DDA3937_RS01605 at 353.778 kb on - strand, within DDA3937_RS01605 at 353.887 kb on + strand, within DDA3937_RS01605 at 353.887 kb on + strand, within DDA3937_RS01605 at 353.887 kb on + strand, within DDA3937_RS01605 at 353.942 kb on - strand, within DDA3937_RS01605 at 353.998 kb on + strand, within DDA3937_RS01605 at 354.255 kb on + strand at 354.327 kb on + strand, within DDA3937_RS01605 at 354.406 kb on + strand, within DDA3937_RS01605 at 354.424 kb on + strand, within DDA3937_RS01605 at 354.440 kb on - strand, within DDA3937_RS01605 at 354.540 kb on - strand at 354.613 kb on + strand at 354.614 kb on - strand at 354.614 kb on - strand at 354.615 kb on + strand at 354.615 kb on + strand at 354.616 kb on - strand at 354.616 kb on - strand at 354.616 kb on - strand at 354.616 kb on - strand at 354.617 kb on + strand at 354.617 kb on + strand at 354.618 kb on - strand at 354.618 kb on - strand at 354.618 kb on - strand at 354.618 kb on - strand at 354.618 kb on - strand at 354.618 kb on - strand at 354.618 kb on - strand at 354.671 kb on + strand at 354.672 kb on - strand at 354.672 kb on - strand at 354.682 kb on + strand at 354.682 kb on + strand at 354.682 kb on + strand at 354.682 kb on + strand at 354.683 kb on - strand at 354.683 kb on - strand at 354.684 kb on + strand at 354.684 kb on + strand at 354.685 kb on - strand at 354.685 kb on - strand at 354.685 kb on - strand at 354.685 kb on - strand at 354.686 kb on + strand at 354.687 kb on - strand at 354.729 kb on + strand at 354.742 kb on + strand at 354.760 kb on + strand at 354.760 kb on + strand at 354.761 kb on - strand at 354.843 kb on + strand at 354.844 kb on - strand at 354.867 kb on + strand at 354.867 kb on + strand at 355.003 kb on - strand, within DDA3937_RS01610 at 355.050 kb on + strand, within DDA3937_RS01610 at 355.051 kb on - strand, within DDA3937_RS01610 at 355.051 kb on - strand, within DDA3937_RS01610 at 355.051 kb on - strand, within DDA3937_RS01610 at 355.051 kb on - strand, within DDA3937_RS01610 at 355.051 kb on - strand, within DDA3937_RS01610 at 355.051 kb on - strand, within DDA3937_RS01610 at 355.058 kb on + strand, within DDA3937_RS01610 at 355.058 kb on + strand, within DDA3937_RS01610 at 355.059 kb on - strand, within DDA3937_RS01610 at 355.083 kb on + strand, within DDA3937_RS01610 at 355.137 kb on - strand, within DDA3937_RS01610 at 355.137 kb on - strand at 355.164 kb on - strand, within DDA3937_RS01610 at 355.164 kb on - strand, within DDA3937_RS01610 at 355.180 kb on + strand at 355.200 kb on + strand, within DDA3937_RS01610 at 355.201 kb on - strand, within DDA3937_RS01610 at 355.201 kb on - strand, within DDA3937_RS01610 at 355.278 kb on + strand at 355.278 kb on + strand at 355.278 kb on + strand at 355.279 kb on - strand at 355.279 kb on - strand at 355.290 kb on + strand at 355.290 kb on + strand at 355.290 kb on + strand at 355.290 kb on + strand at 355.291 kb on - strand at 355.291 kb on - strand at 355.326 kb on + strand at 355.326 kb on + strand at 355.326 kb on + strand at 355.326 kb on + strand at 355.326 kb on + strand at 355.326 kb on + strand at 355.327 kb on - strand at 355.327 kb on - strand at 355.327 kb on - strand at 355.329 kb on + strand at 355.330 kb on - strand at 355.330 kb on - strand at 355.330 kb on - strand at 355.330 kb on - strand at 355.332 kb on + strand at 355.332 kb on + strand at 355.332 kb on + strand at 355.339 kb on + strand at 355.339 kb on + strand at 355.339 kb on + strand at 355.339 kb on + strand at 355.339 kb on + strand at 355.340 kb on - strand at 355.340 kb on - strand at 355.340 kb on - strand at 355.340 kb on - strand at 355.340 kb on - strand at 355.340 kb on - strand at 355.341 kb on + strand at 355.457 kb on + strand at 355.458 kb on - strand at 355.458 kb on - strand at 355.517 kb on - strand at 355.543 kb on + strand at 355.543 kb on + strand at 355.543 kb on + strand at 355.590 kb on + strand at 355.591 kb on - strand at 355.616 kb on + strand, within DDA3937_RS01615 at 355.616 kb on + strand, within DDA3937_RS01615 at 355.617 kb on - strand, within DDA3937_RS01615
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 352,321 + DDA3937_RS01600 0.19 -1.6 352,407 + DDA3937_RS01600 0.27 -0.4 352,408 - DDA3937_RS01600 0.27 -1.9 352,408 - DDA3937_RS01600 0.27 -1.0 352,408 - DDA3937_RS01600 0.27 -1.4 352,409 + DDA3937_RS01600 0.27 +1.6 352,409 + DDA3937_RS01600 0.27 -0.8 352,409 + DDA3937_RS01600 0.27 -1.6 352,409 + DDA3937_RS01600 0.27 -2.8 352,409 + DDA3937_RS01600 0.27 -2.7 352,410 - DDA3937_RS01600 0.28 -4.5 352,410 - DDA3937_RS01600 0.28 -1.7 352,410 - DDA3937_RS01600 0.28 -0.7 352,410 - DDA3937_RS01600 0.28 -2.5 352,420 + +0.6 352,421 - DDA3937_RS01600 0.29 -2.7 352,438 + DDA3937_RS01600 0.30 -0.9 352,438 + DDA3937_RS01600 0.30 +0.0 352,438 + DDA3937_RS01600 0.30 -1.6 352,439 - DDA3937_RS01600 0.30 -4.1 352,512 + DDA3937_RS01600 0.37 -0.7 352,518 + DDA3937_RS01600 0.38 -1.1 352,697 + DDA3937_RS01600 0.55 -2.7 352,697 + DDA3937_RS01600 0.55 -2.0 352,697 + DDA3937_RS01600 0.55 -2.6 352,698 - DDA3937_RS01600 0.55 -1.8 352,896 + DDA3937_RS01600 0.73 -0.5 352,896 + DDA3937_RS01600 0.73 -1.0 352,910 + DDA3937_RS01600 0.75 -2.5 352,911 - DDA3937_RS01600 0.75 -2.4 352,957 + DDA3937_RS01600 0.79 -1.9 352,958 - DDA3937_RS01600 0.79 -2.6 352,958 - DDA3937_RS01600 0.79 -1.8 352,958 - DDA3937_RS01600 0.79 -1.7 352,994 + DDA3937_RS01600 0.83 -3.8 352,994 + DDA3937_RS01600 0.83 -1.6 352,994 + DDA3937_RS01600 0.83 -0.0 352,995 - DDA3937_RS01600 0.83 -1.6 352,996 + DDA3937_RS01600 0.83 -3.9 352,996 + DDA3937_RS01600 0.83 -1.2 352,996 + DDA3937_RS01600 0.83 -2.0 352,996 + DDA3937_RS01600 0.83 -2.6 352,996 + DDA3937_RS01600 0.83 -0.6 352,997 - DDA3937_RS01600 0.83 -2.0 352,997 - DDA3937_RS01600 0.83 -1.6 352,997 - DDA3937_RS01600 0.83 -2.3 352,997 - DDA3937_RS01600 0.83 -2.2 353,036 + DDA3937_RS01600 0.87 -2.1 353,037 - DDA3937_RS01600 0.87 -2.6 353,037 - DDA3937_RS01600 0.87 -2.3 353,039 + DDA3937_RS01600 0.87 -0.1 353,039 + DDA3937_RS01600 0.87 -2.2 353,040 - DDA3937_RS01600 0.87 -2.2 353,040 - DDA3937_RS01600 0.87 -3.4 353,040 - DDA3937_RS01600 0.87 -2.7 353,040 - DDA3937_RS01600 0.87 +1.4 353,161 + -1.2 353,162 - -1.2 353,193 + -2.0 353,193 + -3.8 353,193 + -2.6 353,193 + +1.6 353,193 + -1.6 353,194 - +1.5 353,195 + -1.0 353,195 + -1.1 353,195 + -1.9 353,196 - +1.2 353,217 + -3.6 353,268 + -0.4 353,269 - -1.6 353,283 + -0.7 353,283 + -1.3 353,283 + -1.5 353,283 + -1.9 353,283 + -0.3 353,283 + +0.9 353,284 - -2.2 353,284 - +0.2 353,284 - -1.3 353,284 - -3.9 353,284 - -2.1 353,308 + -1.2 353,308 + -1.0 353,309 - -2.5 353,396 - -1.3 353,396 - -1.8 353,396 - -1.0 353,398 + -0.4 353,398 + -2.7 353,399 - +1.7 353,449 + DDA3937_RS01605 0.13 -2.9 353,449 + DDA3937_RS01605 0.13 -2.8 353,480 - DDA3937_RS01605 0.16 +2.3 353,480 - DDA3937_RS01605 0.16 +0.1 353,480 - DDA3937_RS01605 0.16 -1.4 353,527 + DDA3937_RS01605 0.19 -0.4 353,528 - DDA3937_RS01605 0.19 -1.6 353,612 + DDA3937_RS01605 0.25 -2.8 353,778 - DDA3937_RS01605 0.37 -2.4 353,887 + DDA3937_RS01605 0.45 -1.2 353,887 + DDA3937_RS01605 0.45 -1.6 353,887 + DDA3937_RS01605 0.45 +0.0 353,942 - DDA3937_RS01605 0.49 -1.4 353,998 + DDA3937_RS01605 0.53 +0.0 354,255 + -0.7 354,327 + DDA3937_RS01605 0.77 -2.4 354,406 + DDA3937_RS01605 0.83 -1.4 354,424 + DDA3937_RS01605 0.84 -2.5 354,440 - DDA3937_RS01605 0.86 -2.0 354,540 - +1.2 354,613 + -0.4 354,614 - -1.4 354,614 - -2.2 354,615 + -0.4 354,615 + -3.2 354,616 - -3.0 354,616 - -1.8 354,616 - +0.6 354,616 - -2.4 354,617 + +0.3 354,617 + -0.7 354,618 - -2.2 354,618 - -1.4 354,618 - +0.8 354,618 - -1.0 354,618 - +0.6 354,618 - -2.3 354,618 - -0.5 354,671 + +0.0 354,672 - -1.8 354,672 - -2.3 354,682 + -1.2 354,682 + -0.4 354,682 + -1.4 354,682 + -1.5 354,683 - -2.0 354,683 - -1.2 354,684 + -2.1 354,684 + -1.0 354,685 - +0.2 354,685 - -1.0 354,685 - -2.6 354,685 - +0.7 354,686 + -0.4 354,687 - -0.7 354,729 + -0.4 354,742 + -2.4 354,760 + -0.8 354,760 + +2.2 354,761 - -1.8 354,843 + -0.9 354,844 - +0.2 354,867 + -2.4 354,867 + -1.2 355,003 - DDA3937_RS01610 0.32 -3.8 355,050 + DDA3937_RS01610 0.43 -1.4 355,051 - DDA3937_RS01610 0.44 +1.5 355,051 - DDA3937_RS01610 0.44 +0.0 355,051 - DDA3937_RS01610 0.44 -1.0 355,051 - DDA3937_RS01610 0.44 -0.0 355,051 - DDA3937_RS01610 0.44 -1.2 355,051 - DDA3937_RS01610 0.44 +0.0 355,058 + DDA3937_RS01610 0.45 -2.4 355,058 + DDA3937_RS01610 0.45 +0.1 355,059 - DDA3937_RS01610 0.46 -1.2 355,083 + DDA3937_RS01610 0.52 -2.6 355,137 - DDA3937_RS01610 0.65 +0.0 355,137 - +1.0 355,164 - DDA3937_RS01610 0.72 -0.3 355,164 - DDA3937_RS01610 0.72 +0.6 355,180 + -0.7 355,200 + DDA3937_RS01610 0.80 +0.2 355,201 - DDA3937_RS01610 0.81 -2.2 355,201 - DDA3937_RS01610 0.81 -2.1 355,278 + -1.0 355,278 + +0.0 355,278 + -2.3 355,279 - +1.1 355,279 - -0.4 355,290 + -3.1 355,290 + -2.6 355,290 + +0.8 355,290 + +2.0 355,291 - -0.2 355,291 - +1.6 355,326 + -2.8 355,326 + +0.8 355,326 + -3.7 355,326 + -1.0 355,326 + -1.0 355,326 + -0.2 355,327 - -2.4 355,327 - -2.6 355,327 - +2.1 355,329 + +0.7 355,330 - +1.3 355,330 - -1.8 355,330 - -0.7 355,330 - +1.1 355,332 + +1.2 355,332 + +1.8 355,332 + +2.2 355,339 + -1.2 355,339 + +2.3 355,339 + -0.8 355,339 + -1.7 355,339 + -0.3 355,340 - +0.2 355,340 - +2.1 355,340 - -2.2 355,340 - -1.5 355,340 - -3.3 355,340 - -0.8 355,341 + -0.4 355,457 + -2.3 355,458 - -3.0 355,458 - -1.4 355,517 - -2.6 355,543 + -1.5 355,543 + +1.8 355,543 + +1.5 355,590 + -1.0 355,591 - -2.8 355,616 + DDA3937_RS01615 0.11 -0.1 355,616 + DDA3937_RS01615 0.11 +0.8 355,617 - DDA3937_RS01615 0.11 -2.5
Or see this region's nucleotide sequence