Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01600

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01595 and DDA3937_RS01600 are separated by 58 nucleotidesDDA3937_RS01600 and DDA3937_RS01605 are separated by 88 nucleotides DDA3937_RS01595: DDA3937_RS01595 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 350,796 to 352,058 _RS01595 DDA3937_RS01600: DDA3937_RS01600 - outer membrane-stress sensor serine endopeptidase DegS, at 352,117 to 353,178 _RS01600 DDA3937_RS01605: DDA3937_RS01605 - serine endoprotease DegQ, at 353,267 to 354,637 _RS01605 Position (kb) 352 353 354Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 352.140 kb on + strandat 352.146 kb on + strandat 352.146 kb on + strandat 352.156 kb on + strandat 352.156 kb on + strandat 352.157 kb on - strandat 352.157 kb on - strandat 352.168 kb on - strandat 352.234 kb on + strand, within DDA3937_RS01600at 352.234 kb on + strand, within DDA3937_RS01600at 352.235 kb on - strand, within DDA3937_RS01600at 352.321 kb on + strand, within DDA3937_RS01600at 352.407 kb on + strand, within DDA3937_RS01600at 352.408 kb on - strand, within DDA3937_RS01600at 352.408 kb on - strand, within DDA3937_RS01600at 352.408 kb on - strand, within DDA3937_RS01600at 352.409 kb on + strand, within DDA3937_RS01600at 352.409 kb on + strand, within DDA3937_RS01600at 352.409 kb on + strand, within DDA3937_RS01600at 352.409 kb on + strand, within DDA3937_RS01600at 352.409 kb on + strand, within DDA3937_RS01600at 352.410 kb on - strand, within DDA3937_RS01600at 352.410 kb on - strand, within DDA3937_RS01600at 352.410 kb on - strand, within DDA3937_RS01600at 352.410 kb on - strand, within DDA3937_RS01600at 352.420 kb on + strandat 352.421 kb on - strand, within DDA3937_RS01600at 352.438 kb on + strand, within DDA3937_RS01600at 352.438 kb on + strand, within DDA3937_RS01600at 352.438 kb on + strand, within DDA3937_RS01600at 352.439 kb on - strand, within DDA3937_RS01600at 352.512 kb on + strand, within DDA3937_RS01600at 352.518 kb on + strand, within DDA3937_RS01600at 352.697 kb on + strand, within DDA3937_RS01600at 352.697 kb on + strand, within DDA3937_RS01600at 352.697 kb on + strand, within DDA3937_RS01600at 352.698 kb on - strand, within DDA3937_RS01600at 352.896 kb on + strand, within DDA3937_RS01600at 352.896 kb on + strand, within DDA3937_RS01600at 352.910 kb on + strand, within DDA3937_RS01600at 352.911 kb on - strand, within DDA3937_RS01600at 352.957 kb on + strand, within DDA3937_RS01600at 352.958 kb on - strand, within DDA3937_RS01600at 352.958 kb on - strand, within DDA3937_RS01600at 352.958 kb on - strand, within DDA3937_RS01600at 352.994 kb on + strand, within DDA3937_RS01600at 352.994 kb on + strand, within DDA3937_RS01600at 352.994 kb on + strand, within DDA3937_RS01600at 352.995 kb on - strand, within DDA3937_RS01600at 352.996 kb on + strand, within DDA3937_RS01600at 352.996 kb on + strand, within DDA3937_RS01600at 352.996 kb on + strand, within DDA3937_RS01600at 352.996 kb on + strand, within DDA3937_RS01600at 352.996 kb on + strand, within DDA3937_RS01600at 352.997 kb on - strand, within DDA3937_RS01600at 352.997 kb on - strand, within DDA3937_RS01600at 352.997 kb on - strand, within DDA3937_RS01600at 352.997 kb on - strand, within DDA3937_RS01600at 353.036 kb on + strand, within DDA3937_RS01600at 353.037 kb on - strand, within DDA3937_RS01600at 353.037 kb on - strand, within DDA3937_RS01600at 353.039 kb on + strand, within DDA3937_RS01600at 353.039 kb on + strand, within DDA3937_RS01600at 353.040 kb on - strand, within DDA3937_RS01600at 353.040 kb on - strand, within DDA3937_RS01600at 353.040 kb on - strand, within DDA3937_RS01600at 353.040 kb on - strand, within DDA3937_RS01600at 353.161 kb on + strandat 353.162 kb on - strandat 353.193 kb on + strandat 353.193 kb on + strandat 353.193 kb on + strandat 353.193 kb on + strandat 353.193 kb on + strandat 353.194 kb on - strandat 353.195 kb on + strandat 353.195 kb on + strandat 353.195 kb on + strandat 353.196 kb on - strandat 353.217 kb on + strandat 353.268 kb on + strandat 353.269 kb on - strandat 353.283 kb on + strandat 353.283 kb on + strandat 353.283 kb on + strandat 353.283 kb on + strandat 353.283 kb on + strandat 353.283 kb on + strandat 353.284 kb on - strandat 353.284 kb on - strandat 353.284 kb on - strandat 353.284 kb on - strandat 353.284 kb on - strandat 353.308 kb on + strandat 353.308 kb on + strandat 353.309 kb on - strandat 353.396 kb on - strandat 353.396 kb on - strandat 353.396 kb on - strandat 353.398 kb on + strandat 353.398 kb on + strandat 353.399 kb on - strandat 353.449 kb on + strand, within DDA3937_RS01605at 353.449 kb on + strand, within DDA3937_RS01605at 353.480 kb on - strand, within DDA3937_RS01605at 353.480 kb on - strand, within DDA3937_RS01605at 353.480 kb on - strand, within DDA3937_RS01605at 353.527 kb on + strand, within DDA3937_RS01605at 353.528 kb on - strand, within DDA3937_RS01605at 353.612 kb on + strand, within DDA3937_RS01605at 353.778 kb on - strand, within DDA3937_RS01605at 353.887 kb on + strand, within DDA3937_RS01605at 353.887 kb on + strand, within DDA3937_RS01605at 353.887 kb on + strand, within DDA3937_RS01605at 353.942 kb on - strand, within DDA3937_RS01605at 353.998 kb on + strand, within DDA3937_RS01605

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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352,140 + -4.1
352,146 + -3.6
352,146 + -2.8
352,156 + -0.4
352,156 + -2.4
352,157 - -2.6
352,157 - -4.1
352,168 - -3.4
352,234 + DDA3937_RS01600 0.11 -3.6
352,234 + DDA3937_RS01600 0.11 -2.7
352,235 - DDA3937_RS01600 0.11 -3.3
352,321 + DDA3937_RS01600 0.19 -1.6
352,407 + DDA3937_RS01600 0.27 -0.4
352,408 - DDA3937_RS01600 0.27 -1.9
352,408 - DDA3937_RS01600 0.27 -1.0
352,408 - DDA3937_RS01600 0.27 -1.4
352,409 + DDA3937_RS01600 0.27 +1.6
352,409 + DDA3937_RS01600 0.27 -0.8
352,409 + DDA3937_RS01600 0.27 -1.6
352,409 + DDA3937_RS01600 0.27 -2.8
352,409 + DDA3937_RS01600 0.27 -2.7
352,410 - DDA3937_RS01600 0.28 -4.5
352,410 - DDA3937_RS01600 0.28 -1.7
352,410 - DDA3937_RS01600 0.28 -0.7
352,410 - DDA3937_RS01600 0.28 -2.5
352,420 + +0.6
352,421 - DDA3937_RS01600 0.29 -2.7
352,438 + DDA3937_RS01600 0.30 -0.9
352,438 + DDA3937_RS01600 0.30 +0.0
352,438 + DDA3937_RS01600 0.30 -1.6
352,439 - DDA3937_RS01600 0.30 -4.1
352,512 + DDA3937_RS01600 0.37 -0.7
352,518 + DDA3937_RS01600 0.38 -1.1
352,697 + DDA3937_RS01600 0.55 -2.7
352,697 + DDA3937_RS01600 0.55 -2.0
352,697 + DDA3937_RS01600 0.55 -2.6
352,698 - DDA3937_RS01600 0.55 -1.8
352,896 + DDA3937_RS01600 0.73 -0.5
352,896 + DDA3937_RS01600 0.73 -1.0
352,910 + DDA3937_RS01600 0.75 -2.5
352,911 - DDA3937_RS01600 0.75 -2.4
352,957 + DDA3937_RS01600 0.79 -1.9
352,958 - DDA3937_RS01600 0.79 -2.6
352,958 - DDA3937_RS01600 0.79 -1.8
352,958 - DDA3937_RS01600 0.79 -1.7
352,994 + DDA3937_RS01600 0.83 -3.8
352,994 + DDA3937_RS01600 0.83 -1.6
352,994 + DDA3937_RS01600 0.83 -0.0
352,995 - DDA3937_RS01600 0.83 -1.6
352,996 + DDA3937_RS01600 0.83 -3.9
352,996 + DDA3937_RS01600 0.83 -1.2
352,996 + DDA3937_RS01600 0.83 -2.0
352,996 + DDA3937_RS01600 0.83 -2.6
352,996 + DDA3937_RS01600 0.83 -0.6
352,997 - DDA3937_RS01600 0.83 -2.0
352,997 - DDA3937_RS01600 0.83 -1.6
352,997 - DDA3937_RS01600 0.83 -2.3
352,997 - DDA3937_RS01600 0.83 -2.2
353,036 + DDA3937_RS01600 0.87 -2.1
353,037 - DDA3937_RS01600 0.87 -2.6
353,037 - DDA3937_RS01600 0.87 -2.3
353,039 + DDA3937_RS01600 0.87 -0.1
353,039 + DDA3937_RS01600 0.87 -2.2
353,040 - DDA3937_RS01600 0.87 -2.2
353,040 - DDA3937_RS01600 0.87 -3.4
353,040 - DDA3937_RS01600 0.87 -2.7
353,040 - DDA3937_RS01600 0.87 +1.4
353,161 + -1.2
353,162 - -1.2
353,193 + -2.0
353,193 + -3.8
353,193 + -2.6
353,193 + +1.6
353,193 + -1.6
353,194 - +1.5
353,195 + -1.0
353,195 + -1.1
353,195 + -1.9
353,196 - +1.2
353,217 + -3.6
353,268 + -0.4
353,269 - -1.6
353,283 + -0.7
353,283 + -1.3
353,283 + -1.5
353,283 + -1.9
353,283 + -0.3
353,283 + +0.9
353,284 - -2.2
353,284 - +0.2
353,284 - -1.3
353,284 - -3.9
353,284 - -2.1
353,308 + -1.2
353,308 + -1.0
353,309 - -2.5
353,396 - -1.3
353,396 - -1.8
353,396 - -1.0
353,398 + -0.4
353,398 + -2.7
353,399 - +1.7
353,449 + DDA3937_RS01605 0.13 -2.9
353,449 + DDA3937_RS01605 0.13 -2.8
353,480 - DDA3937_RS01605 0.16 +2.3
353,480 - DDA3937_RS01605 0.16 +0.1
353,480 - DDA3937_RS01605 0.16 -1.4
353,527 + DDA3937_RS01605 0.19 -0.4
353,528 - DDA3937_RS01605 0.19 -1.6
353,612 + DDA3937_RS01605 0.25 -2.8
353,778 - DDA3937_RS01605 0.37 -2.4
353,887 + DDA3937_RS01605 0.45 -1.2
353,887 + DDA3937_RS01605 0.45 -1.6
353,887 + DDA3937_RS01605 0.45 +0.0
353,942 - DDA3937_RS01605 0.49 -1.4
353,998 + DDA3937_RS01605 0.53 +0.0

Or see this region's nucleotide sequence