Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01500 and DDA3937_RS01505 are separated by 66 nucleotides DDA3937_RS01505 and DDA3937_RS01510 are separated by 180 nucleotides DDA3937_RS01510 and DDA3937_RS01515 overlap by 4 nucleotides DDA3937_RS01515 and DDA3937_RS01520 are separated by 148 nucleotides DDA3937_RS01520 and DDA3937_RS01525 are separated by 93 nucleotides
DDA3937_RS01500: DDA3937_RS01500 - metalloprotease PmbA, at 336,777 to 338,117
_RS01500
DDA3937_RS01505: DDA3937_RS01505 - nucleoside diphosphate kinase regulator, at 338,184 to 338,594
_RS01505
DDA3937_RS01510: DDA3937_RS01510 - PTS phosphocarrier protein NPr, at 338,775 to 339,047
_RS01510
DDA3937_RS01515: DDA3937_RS01515 - RNase adapter RapZ, at 339,044 to 339,898
_RS01515
DDA3937_RS01520: DDA3937_RS01520 - PTS IIA-like nitrogen regulatory protein PtsN, at 340,047 to 340,535
_RS01520
DDA3937_RS01525: DDA3937_RS01525 - ribosome hibernation promoting factor, at 340,629 to 340,916
_RS01525
Position (kb) 339
340 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 338.113 kb on + strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.182 kb on + strand at 338.183 kb on - strand at 338.194 kb on + strand at 338.218 kb on + strand at 338.218 kb on + strand at 338.277 kb on - strand, within DDA3937_RS01505 at 338.277 kb on - strand, within DDA3937_RS01505 at 338.381 kb on + strand, within DDA3937_RS01505 at 338.382 kb on - strand, within DDA3937_RS01505 at 338.423 kb on + strand, within DDA3937_RS01505 at 338.424 kb on - strand, within DDA3937_RS01505 at 338.571 kb on - strand at 338.589 kb on - strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.595 kb on - strand at 338.595 kb on - strand at 338.617 kb on - strand at 338.617 kb on - strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.660 kb on + strand at 338.661 kb on - strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.672 kb on - strand at 338.691 kb on + strand at 338.699 kb on - strand at 338.707 kb on - strand at 338.776 kb on + strand at 338.777 kb on - strand at 338.777 kb on - strand at 338.802 kb on + strand at 338.803 kb on - strand, within DDA3937_RS01510 at 338.811 kb on - strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.941 kb on - strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 339.083 kb on + strand at 339.083 kb on + strand at 339.084 kb on - strand at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.175 kb on + strand at 339.176 kb on - strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.225 kb on + strand, within DDA3937_RS01515 at 339.225 kb on + strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.240 kb on + strand, within DDA3937_RS01515 at 339.240 kb on + strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.337 kb on + strand, within DDA3937_RS01515 at 339.364 kb on - strand, within DDA3937_RS01515 at 339.364 kb on - strand, within DDA3937_RS01515 at 339.394 kb on - strand, within DDA3937_RS01515 at 339.394 kb on - strand, within DDA3937_RS01515 at 339.476 kb on + strand, within DDA3937_RS01515 at 339.476 kb on + strand, within DDA3937_RS01515 at 339.477 kb on - strand, within DDA3937_RS01515 at 339.493 kb on + strand, within DDA3937_RS01515 at 339.629 kb on - strand, within DDA3937_RS01515 at 339.754 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.813 kb on - strand at 339.813 kb on - strand at 339.813 kb on - strand at 339.813 kb on - strand at 339.813 kb on - strand at 339.813 kb on - strand at 339.819 kb on + strand at 339.819 kb on + strand at 339.819 kb on + strand at 339.820 kb on - strand at 339.948 kb on + strand at 339.948 kb on + strand at 339.948 kb on + strand at 339.952 kb on + strand at 339.953 kb on - strand at 339.953 kb on - strand at 340.088 kb on - strand at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.184 kb on + strand, within DDA3937_RS01520 at 340.184 kb on + strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.298 kb on + strand, within DDA3937_RS01520 at 340.298 kb on + strand, within DDA3937_RS01520 at 340.299 kb on - strand, within DDA3937_RS01520 at 340.508 kb on + strand at 340.509 kb on - strand at 340.509 kb on - strand at 340.538 kb on + strand at 340.538 kb on + strand at 340.539 kb on - strand at 340.539 kb on - strand at 340.539 kb on - strand at 340.549 kb on - strand at 340.565 kb on + strand at 340.565 kb on + strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.646 kb on + strand at 340.646 kb on + strand at 340.652 kb on + strand at 340.652 kb on + strand at 340.653 kb on - strand at 340.653 kb on - strand at 340.653 kb on - strand at 340.663 kb on - strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.828 kb on + strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.851 kb on + strand, within DDA3937_RS01525 at 340.857 kb on + strand, within DDA3937_RS01525
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 338,113 + +0.3 338,113 + -3.6 338,113 + -1.0 338,115 + -3.8 338,115 + -0.2 338,115 + -0.9 338,115 + +0.6 338,115 + +0.6 338,116 - +0.1 338,116 - -2.5 338,116 - -0.9 338,116 - +1.4 338,182 + -1.6 338,183 - -2.8 338,194 + -3.9 338,218 + -1.7 338,218 + +0.0 338,277 - DDA3937_RS01505 0.23 -1.7 338,277 - DDA3937_RS01505 0.23 +1.6 338,381 + DDA3937_RS01505 0.48 -0.6 338,382 - DDA3937_RS01505 0.48 +1.7 338,423 + DDA3937_RS01505 0.58 -0.2 338,424 - DDA3937_RS01505 0.58 -0.9 338,571 - -1.4 338,589 - +3.0 338,594 + -0.8 338,594 + -0.7 338,594 + -0.5 338,595 - -1.8 338,595 - -2.3 338,617 - -2.1 338,617 - +1.8 338,655 + +1.6 338,655 + +0.0 338,655 + +1.9 338,655 + -2.1 338,656 - -1.5 338,656 - -0.5 338,656 - +0.1 338,660 + -0.1 338,661 - -2.6 338,671 + -2.6 338,671 + -1.9 338,671 + +0.6 338,672 - -1.4 338,691 + +0.8 338,699 - -1.9 338,707 - -1.4 338,776 + -3.5 338,777 - -3.2 338,777 - +1.6 338,802 + -1.9 338,803 - DDA3937_RS01510 0.10 -2.9 338,811 - DDA3937_RS01510 0.13 +1.6 338,940 + DDA3937_RS01510 0.60 -1.0 338,940 + DDA3937_RS01510 0.60 +0.5 338,941 - DDA3937_RS01510 0.61 -3.0 338,967 + DDA3937_RS01510 0.70 +0.3 338,967 + DDA3937_RS01510 0.70 -0.5 339,083 + -3.0 339,083 + -1.8 339,084 - +0.6 339,132 + DDA3937_RS01515 0.10 -2.9 339,132 + DDA3937_RS01515 0.10 -0.5 339,132 + DDA3937_RS01515 0.10 -1.2 339,132 + DDA3937_RS01515 0.10 -2.2 339,133 - DDA3937_RS01515 0.10 -3.0 339,133 - DDA3937_RS01515 0.10 -4.2 339,133 - DDA3937_RS01515 0.10 -0.9 339,175 + +1.6 339,176 - DDA3937_RS01515 0.15 -2.7 339,180 + DDA3937_RS01515 0.16 -2.2 339,180 + DDA3937_RS01515 0.16 -2.4 339,180 + DDA3937_RS01515 0.16 -2.6 339,180 + DDA3937_RS01515 0.16 -0.2 339,181 - DDA3937_RS01515 0.16 -1.0 339,181 - DDA3937_RS01515 0.16 -2.8 339,181 - DDA3937_RS01515 0.16 -3.8 339,181 - DDA3937_RS01515 0.16 -2.2 339,181 - DDA3937_RS01515 0.16 -2.7 339,225 + DDA3937_RS01515 0.21 -2.7 339,225 + DDA3937_RS01515 0.21 +1.0 339,226 - DDA3937_RS01515 0.21 -0.4 339,226 - DDA3937_RS01515 0.21 -1.8 339,226 - DDA3937_RS01515 0.21 -1.1 339,240 + DDA3937_RS01515 0.23 -1.4 339,240 + DDA3937_RS01515 0.23 -3.3 339,241 - DDA3937_RS01515 0.23 -0.9 339,241 - DDA3937_RS01515 0.23 -2.8 339,241 - DDA3937_RS01515 0.23 -1.3 339,241 - DDA3937_RS01515 0.23 -1.7 339,241 - DDA3937_RS01515 0.23 -2.8 339,337 + DDA3937_RS01515 0.34 -2.4 339,364 - DDA3937_RS01515 0.37 -1.7 339,364 - DDA3937_RS01515 0.37 -2.4 339,394 - DDA3937_RS01515 0.41 -2.4 339,394 - DDA3937_RS01515 0.41 -2.5 339,476 + DDA3937_RS01515 0.51 -2.0 339,476 + DDA3937_RS01515 0.51 -4.1 339,477 - DDA3937_RS01515 0.51 -3.1 339,493 + DDA3937_RS01515 0.53 +0.9 339,629 - DDA3937_RS01515 0.68 -2.2 339,754 + DDA3937_RS01515 0.83 -3.5 339,812 + DDA3937_RS01515 0.90 -1.2 339,812 + DDA3937_RS01515 0.90 -3.1 339,812 + DDA3937_RS01515 0.90 -3.2 339,812 + DDA3937_RS01515 0.90 -2.2 339,812 + DDA3937_RS01515 0.90 -1.9 339,812 + DDA3937_RS01515 0.90 +2.3 339,812 + DDA3937_RS01515 0.90 -2.2 339,812 + DDA3937_RS01515 0.90 -2.5 339,812 + DDA3937_RS01515 0.90 -3.5 339,813 - -3.7 339,813 - -3.1 339,813 - -0.2 339,813 - -2.1 339,813 - -1.7 339,813 - -0.2 339,819 + -0.7 339,819 + -2.9 339,819 + -3.0 339,820 - -3.4 339,948 + -4.1 339,948 + -3.3 339,948 + -2.6 339,952 + -1.2 339,953 - +0.0 339,953 - -4.7 340,088 - -1.7 340,169 + DDA3937_RS01520 0.25 -2.9 340,169 + DDA3937_RS01520 0.25 -2.4 340,169 + DDA3937_RS01520 0.25 -1.6 340,169 + DDA3937_RS01520 0.25 -1.6 340,169 + DDA3937_RS01520 0.25 -0.7 340,169 + DDA3937_RS01520 0.25 -1.7 340,169 + DDA3937_RS01520 0.25 -2.2 340,169 + DDA3937_RS01520 0.25 -2.1 340,169 + DDA3937_RS01520 0.25 -1.3 340,170 - DDA3937_RS01520 0.25 -2.3 340,170 - DDA3937_RS01520 0.25 -1.9 340,170 - DDA3937_RS01520 0.25 -0.7 340,170 - DDA3937_RS01520 0.25 -0.4 340,170 - DDA3937_RS01520 0.25 -2.9 340,170 - DDA3937_RS01520 0.25 -3.4 340,170 - DDA3937_RS01520 0.25 -2.9 340,173 + DDA3937_RS01520 0.26 -3.3 340,173 + DDA3937_RS01520 0.26 -0.7 340,173 + DDA3937_RS01520 0.26 -2.4 340,174 - DDA3937_RS01520 0.26 -0.4 340,174 - DDA3937_RS01520 0.26 -1.2 340,174 - DDA3937_RS01520 0.26 -1.2 340,184 + DDA3937_RS01520 0.28 -2.1 340,184 + DDA3937_RS01520 0.28 -2.1 340,185 - DDA3937_RS01520 0.28 -0.7 340,185 - DDA3937_RS01520 0.28 -1.4 340,185 - DDA3937_RS01520 0.28 -2.0 340,298 + DDA3937_RS01520 0.51 -3.1 340,298 + DDA3937_RS01520 0.51 -1.2 340,299 - DDA3937_RS01520 0.52 -1.7 340,508 + -2.0 340,509 - -2.2 340,509 - -1.1 340,538 + -1.7 340,538 + -0.6 340,539 - -2.6 340,539 - -1.8 340,539 - -1.1 340,549 - +1.9 340,565 + -1.4 340,565 + -2.3 340,566 - -1.7 340,566 - -1.7 340,566 - +1.6 340,566 - -3.0 340,646 + -3.0 340,646 + -0.7 340,652 + +0.0 340,652 + -1.6 340,653 - +2.6 340,653 - -3.5 340,653 - -1.7 340,663 - DDA3937_RS01525 0.12 -0.6 340,705 + DDA3937_RS01525 0.26 -0.4 340,705 + DDA3937_RS01525 0.26 -1.6 340,705 + DDA3937_RS01525 0.26 -1.2 340,705 + DDA3937_RS01525 0.26 -1.9 340,705 + DDA3937_RS01525 0.26 +1.0 340,705 + DDA3937_RS01525 0.26 -4.5 340,705 + DDA3937_RS01525 0.26 -4.9 340,705 + DDA3937_RS01525 0.26 -0.8 340,705 + DDA3937_RS01525 0.26 -1.0 340,706 - DDA3937_RS01525 0.27 +0.8 340,706 - DDA3937_RS01525 0.27 +0.5 340,706 - DDA3937_RS01525 0.27 -0.3 340,706 - DDA3937_RS01525 0.27 +1.1 340,706 - DDA3937_RS01525 0.27 +1.7 340,706 - DDA3937_RS01525 0.27 -1.9 340,706 - DDA3937_RS01525 0.27 +0.5 340,706 - DDA3937_RS01525 0.27 -1.4 340,709 + DDA3937_RS01525 0.28 -2.5 340,709 + DDA3937_RS01525 0.28 -1.2 340,709 + +0.6 340,709 + DDA3937_RS01525 0.28 -1.9 340,709 + DDA3937_RS01525 0.28 -1.7 340,709 + DDA3937_RS01525 0.28 -2.3 340,710 - DDA3937_RS01525 0.28 -0.7 340,710 - DDA3937_RS01525 0.28 +0.0 340,710 - DDA3937_RS01525 0.28 -0.8 340,710 - DDA3937_RS01525 0.28 -1.4 340,710 - DDA3937_RS01525 0.28 -1.0 340,804 + DDA3937_RS01525 0.61 -0.1 340,804 + DDA3937_RS01525 0.61 -1.7 340,804 + DDA3937_RS01525 0.61 -3.0 340,804 + DDA3937_RS01525 0.61 -1.9 340,805 - DDA3937_RS01525 0.61 -1.2 340,805 - DDA3937_RS01525 0.61 +0.8 340,805 - DDA3937_RS01525 0.61 +1.6 340,805 - DDA3937_RS01525 0.61 +1.0 340,805 - DDA3937_RS01525 0.61 -1.4 340,805 - DDA3937_RS01525 0.61 -0.4 340,828 + DDA3937_RS01525 0.69 -2.7 340,829 - DDA3937_RS01525 0.69 -1.7 340,829 - DDA3937_RS01525 0.69 +2.6 340,829 - DDA3937_RS01525 0.69 -1.7 340,829 - DDA3937_RS01525 0.69 +2.5 340,851 + DDA3937_RS01525 0.77 -2.1 340,857 + DDA3937_RS01525 0.79 +1.7
Or see this region's nucleotide sequence