Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01320 and DDA3937_RS01325 overlap by 1 nucleotides DDA3937_RS01325 and DDA3937_RS01330 are separated by 90 nucleotides DDA3937_RS01330 and DDA3937_RS23390 are separated by 111 nucleotides DDA3937_RS23390 and DDA3937_RS01340 are separated by 189 nucleotides
DDA3937_RS01320: DDA3937_RS01320 - site-specific integrase, at 296,712 to 297,932
_RS01320
DDA3937_RS01325: DDA3937_RS01325 - hypothetical protein, at 297,932 to 298,669
_RS01325
DDA3937_RS01330: DDA3937_RS01330 - AlpA family phage regulatory protein, at 298,760 to 298,984
_RS01330
DDA3937_RS23390: DDA3937_RS23390 - hypothetical protein, at 299,096 to 299,290
_RS23390
DDA3937_RS01340: DDA3937_RS01340 - hypothetical protein, at 299,480 to 299,701
_RS01340
Position (kb) 297
298
299 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 297.000 kb on - strand, within DDA3937_RS01320 at 297.051 kb on + strand, within DDA3937_RS01320 at 297.067 kb on - strand, within DDA3937_RS01320 at 297.067 kb on - strand, within DDA3937_RS01320 at 297.071 kb on + strand, within DDA3937_RS01320 at 297.071 kb on + strand, within DDA3937_RS01320 at 297.091 kb on + strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.127 kb on - strand, within DDA3937_RS01320 at 297.132 kb on + strand, within DDA3937_RS01320 at 297.132 kb on + strand, within DDA3937_RS01320 at 297.133 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.196 kb on + strand, within DDA3937_RS01320 at 297.197 kb on - strand, within DDA3937_RS01320 at 297.226 kb on - strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.243 kb on - strand, within DDA3937_RS01320 at 297.277 kb on - strand, within DDA3937_RS01320 at 297.277 kb on - strand at 297.284 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.320 kb on - strand, within DDA3937_RS01320 at 297.412 kb on - strand, within DDA3937_RS01320 at 297.412 kb on - strand, within DDA3937_RS01320 at 297.414 kb on + strand, within DDA3937_RS01320 at 297.415 kb on - strand, within DDA3937_RS01320 at 297.466 kb on + strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.550 kb on + strand, within DDA3937_RS01320 at 297.560 kb on + strand, within DDA3937_RS01320 at 297.599 kb on + strand, within DDA3937_RS01320 at 297.638 kb on - strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.746 kb on - strand, within DDA3937_RS01320 at 297.752 kb on + strand, within DDA3937_RS01320 at 297.753 kb on - strand, within DDA3937_RS01320 at 297.759 kb on - strand, within DDA3937_RS01320 at 297.794 kb on + strand, within DDA3937_RS01320 at 297.795 kb on - strand, within DDA3937_RS01320 at 297.795 kb on - strand, within DDA3937_RS01320 at 297.834 kb on + strand at 297.835 kb on - strand at 297.863 kb on + strand at 298.042 kb on + strand, within DDA3937_RS01325 at 298.053 kb on - strand, within DDA3937_RS01325 at 298.186 kb on + strand, within DDA3937_RS01325 at 298.234 kb on + strand, within DDA3937_RS01325 at 298.294 kb on + strand, within DDA3937_RS01325 at 298.361 kb on + strand, within DDA3937_RS01325 at 298.362 kb on - strand, within DDA3937_RS01325 at 298.390 kb on - strand, within DDA3937_RS01325 at 298.390 kb on - strand, within DDA3937_RS01325 at 298.547 kb on - strand, within DDA3937_RS01325 at 298.563 kb on + strand, within DDA3937_RS01325 at 298.624 kb on - strand at 298.641 kb on - strand at 298.671 kb on - strand at 298.700 kb on + strand at 298.771 kb on + strand at 298.800 kb on + strand, within DDA3937_RS01330 at 298.803 kb on + strand, within DDA3937_RS01330 at 298.804 kb on - strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.963 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.988 kb on - strand at 298.988 kb on - strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.992 kb on - strand at 298.992 kb on - strand at 298.992 kb on - strand at 299.000 kb on + strand at 299.000 kb on + strand at 299.047 kb on + strand at 299.063 kb on + strand at 299.064 kb on - strand at 299.064 kb on - strand at 299.093 kb on + strand at 299.093 kb on + strand at 299.094 kb on - strand at 299.094 kb on - strand at 299.094 kb on - strand at 299.116 kb on + strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.310 kb on - strand at 299.345 kb on - strand at 299.369 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.479 kb on + strand at 299.537 kb on - strand at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.649 kb on + strand, within DDA3937_RS01340 at 299.650 kb on - strand, within DDA3937_RS01340 at 299.656 kb on - strand, within DDA3937_RS01340
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 296,995 + DDA3937_RS01320 0.23 -2.4 296,995 + DDA3937_RS01320 0.23 +0.6 296,995 + DDA3937_RS01320 0.23 -0.9 296,995 + DDA3937_RS01320 0.23 -0.7 297,000 - DDA3937_RS01320 0.24 -0.9 297,051 + DDA3937_RS01320 0.28 -1.6 297,067 - DDA3937_RS01320 0.29 -1.6 297,067 - DDA3937_RS01320 0.29 -0.4 297,071 + DDA3937_RS01320 0.29 -0.8 297,071 + DDA3937_RS01320 0.29 -0.9 297,091 + DDA3937_RS01320 0.31 -1.0 297,092 - DDA3937_RS01320 0.31 -1.9 297,092 - DDA3937_RS01320 0.31 +0.6 297,092 - DDA3937_RS01320 0.31 -0.1 297,092 - DDA3937_RS01320 0.31 -1.5 297,092 - DDA3937_RS01320 0.31 -0.3 297,092 - DDA3937_RS01320 0.31 -0.9 297,095 + DDA3937_RS01320 0.31 -1.3 297,095 + DDA3937_RS01320 0.31 +2.5 297,095 + DDA3937_RS01320 0.31 -0.0 297,096 - DDA3937_RS01320 0.31 +3.2 297,096 - DDA3937_RS01320 0.31 -3.2 297,096 - DDA3937_RS01320 0.31 -1.9 297,096 - DDA3937_RS01320 0.31 -0.7 297,096 - DDA3937_RS01320 0.31 -1.0 297,122 + DDA3937_RS01320 0.34 -1.4 297,122 + DDA3937_RS01320 0.34 -0.4 297,122 + DDA3937_RS01320 0.34 +2.4 297,123 - DDA3937_RS01320 0.34 -2.4 297,123 - DDA3937_RS01320 0.34 -0.5 297,123 - DDA3937_RS01320 0.34 -2.5 297,126 + DDA3937_RS01320 0.34 +1.3 297,126 + DDA3937_RS01320 0.34 -2.9 297,126 + DDA3937_RS01320 0.34 +0.1 297,127 - DDA3937_RS01320 0.34 -1.8 297,132 + DDA3937_RS01320 0.34 -0.9 297,132 + DDA3937_RS01320 0.34 +1.0 297,133 - DDA3937_RS01320 0.34 -2.5 297,137 - DDA3937_RS01320 0.35 +2.3 297,137 - DDA3937_RS01320 0.35 +0.2 297,137 - DDA3937_RS01320 0.35 +1.0 297,137 - DDA3937_RS01320 0.35 -1.2 297,196 + DDA3937_RS01320 0.40 +1.4 297,197 - DDA3937_RS01320 0.40 +0.7 297,226 - DDA3937_RS01320 0.42 -2.8 297,242 + DDA3937_RS01320 0.43 -3.5 297,242 + DDA3937_RS01320 0.43 -0.4 297,242 + DDA3937_RS01320 0.43 +0.1 297,242 + DDA3937_RS01320 0.43 -1.9 297,243 - DDA3937_RS01320 0.43 -1.3 297,277 - DDA3937_RS01320 0.46 -1.8 297,277 - +0.6 297,284 + DDA3937_RS01320 0.47 -0.3 297,287 + DDA3937_RS01320 0.47 +0.3 297,287 + DDA3937_RS01320 0.47 -3.8 297,287 + DDA3937_RS01320 0.47 -0.7 297,288 - DDA3937_RS01320 0.47 +1.6 297,288 - DDA3937_RS01320 0.47 -2.1 297,288 - DDA3937_RS01320 0.47 +0.6 297,288 - DDA3937_RS01320 0.47 -1.3 297,319 + DDA3937_RS01320 0.50 -1.5 297,319 + DDA3937_RS01320 0.50 -2.4 297,319 + DDA3937_RS01320 0.50 +0.4 297,320 - DDA3937_RS01320 0.50 -2.0 297,412 - DDA3937_RS01320 0.57 -3.6 297,412 - DDA3937_RS01320 0.57 -0.0 297,414 + DDA3937_RS01320 0.57 -0.6 297,415 - DDA3937_RS01320 0.58 +0.2 297,466 + DDA3937_RS01320 0.62 -1.4 297,497 - DDA3937_RS01320 0.64 -0.9 297,497 - DDA3937_RS01320 0.64 +1.1 297,497 - DDA3937_RS01320 0.64 -3.8 297,497 - DDA3937_RS01320 0.64 -0.7 297,497 - DDA3937_RS01320 0.64 -3.0 297,530 + DDA3937_RS01320 0.67 +0.1 297,530 + DDA3937_RS01320 0.67 -3.7 297,530 + DDA3937_RS01320 0.67 -1.4 297,530 + DDA3937_RS01320 0.67 +1.7 297,530 + DDA3937_RS01320 0.67 -0.8 297,531 - DDA3937_RS01320 0.67 -2.8 297,531 - DDA3937_RS01320 0.67 -2.1 297,531 - DDA3937_RS01320 0.67 +0.6 297,531 - DDA3937_RS01320 0.67 +1.3 297,531 - DDA3937_RS01320 0.67 -3.3 297,531 - DDA3937_RS01320 0.67 +0.1 297,550 + DDA3937_RS01320 0.69 +0.4 297,560 + DDA3937_RS01320 0.69 +1.3 297,599 + DDA3937_RS01320 0.73 -1.8 297,638 - DDA3937_RS01320 0.76 -2.8 297,678 + DDA3937_RS01320 0.79 -1.8 297,678 + DDA3937_RS01320 0.79 -1.4 297,678 + DDA3937_RS01320 0.79 -2.9 297,679 - DDA3937_RS01320 0.79 +0.1 297,679 - DDA3937_RS01320 0.79 -1.9 297,679 - DDA3937_RS01320 0.79 -0.2 297,679 - DDA3937_RS01320 0.79 -1.9 297,679 - DDA3937_RS01320 0.79 -1.2 297,746 - DDA3937_RS01320 0.85 -1.6 297,752 + DDA3937_RS01320 0.85 -3.2 297,753 - DDA3937_RS01320 0.85 -2.0 297,759 - DDA3937_RS01320 0.86 -1.2 297,794 + DDA3937_RS01320 0.89 -1.4 297,795 - DDA3937_RS01320 0.89 -1.2 297,795 - DDA3937_RS01320 0.89 -2.1 297,834 + -2.8 297,835 - +0.4 297,863 + -1.9 298,042 + DDA3937_RS01325 0.15 +1.9 298,053 - DDA3937_RS01325 0.16 -0.9 298,186 + DDA3937_RS01325 0.34 +0.4 298,234 + DDA3937_RS01325 0.41 -0.6 298,294 + DDA3937_RS01325 0.49 +0.4 298,361 + DDA3937_RS01325 0.58 -2.6 298,362 - DDA3937_RS01325 0.58 -3.0 298,390 - DDA3937_RS01325 0.62 -1.8 298,390 - DDA3937_RS01325 0.62 +0.6 298,547 - DDA3937_RS01325 0.83 -1.2 298,563 + DDA3937_RS01325 0.86 +0.6 298,624 - -0.3 298,641 - -2.2 298,671 - -0.4 298,700 + -1.2 298,771 + -2.9 298,800 + DDA3937_RS01330 0.18 -0.4 298,803 + DDA3937_RS01330 0.19 -2.4 298,804 - DDA3937_RS01330 0.20 -0.9 298,896 + DDA3937_RS01330 0.60 +2.4 298,896 + DDA3937_RS01330 0.60 -0.2 298,897 - DDA3937_RS01330 0.61 -4.0 298,897 - DDA3937_RS01330 0.61 +0.1 298,897 - DDA3937_RS01330 0.61 -1.2 298,963 + +2.6 298,987 + -2.4 298,987 + +3.3 298,987 + +0.6 298,987 + +1.6 298,987 + -0.7 298,988 - +0.8 298,988 - +1.1 298,991 + +0.9 298,991 + +0.7 298,991 + -3.6 298,991 + -2.7 298,991 + +0.9 298,992 - +0.1 298,992 - -1.7 298,992 - -3.6 299,000 + +1.0 299,000 + -2.2 299,047 + +0.3 299,063 + +0.9 299,064 - -2.9 299,064 - -1.2 299,093 + +0.1 299,093 + +2.1 299,094 - -1.4 299,094 - -1.4 299,094 - -2.2 299,116 + DDA3937_RS23390 0.10 +0.3 299,117 - DDA3937_RS23390 0.11 -1.0 299,117 - DDA3937_RS23390 0.11 +0.5 299,117 - DDA3937_RS23390 0.11 +0.0 299,310 - +1.5 299,345 - +1.3 299,369 + -0.7 299,458 + -1.7 299,458 + +0.3 299,458 + -1.7 299,458 + -0.1 299,458 + -2.3 299,458 + -0.6 299,459 - +1.2 299,459 - +0.4 299,459 - -1.6 299,459 - -0.2 299,459 - +0.3 299,459 - +0.9 299,459 - +0.9 299,459 - -1.7 299,459 - -1.9 299,459 - -0.7 299,479 + +0.1 299,537 - +1.7 299,537 - DDA3937_RS01340 0.26 -2.5 299,537 - DDA3937_RS01340 0.26 -0.2 299,537 - DDA3937_RS01340 0.26 -2.7 299,537 - +2.1 299,537 - DDA3937_RS01340 0.26 -0.5 299,537 - DDA3937_RS01340 0.26 +0.7 299,537 - DDA3937_RS01340 0.26 +1.7 299,570 + DDA3937_RS01340 0.41 +3.8 299,570 + DDA3937_RS01340 0.41 -1.5 299,570 + DDA3937_RS01340 0.41 -1.9 299,570 + DDA3937_RS01340 0.41 -1.5 299,571 - DDA3937_RS01340 0.41 -1.3 299,571 - DDA3937_RS01340 0.41 -2.2 299,571 - DDA3937_RS01340 0.41 +1.0 299,649 + DDA3937_RS01340 0.76 +1.8 299,650 - DDA3937_RS01340 0.77 +0.4 299,656 - DDA3937_RS01340 0.79 +0.4
Or see this region's nucleotide sequence