Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00970 and DDA3937_RS00975 are separated by 83 nucleotides DDA3937_RS00975 and DDA3937_RS00980 are separated by 206 nucleotides DDA3937_RS00980 and DDA3937_RS00985 are separated by 14 nucleotides
DDA3937_RS00970: DDA3937_RS00970 - DNA-binding transcriptional regulator OxyR, at 223,626 to 224,543
_RS00970
DDA3937_RS00975: DDA3937_RS00975 - Si-specific NAD(P)(+) transhydrogenase, at 224,627 to 226,027
_RS00975
DDA3937_RS00980: DDA3937_RS00980 - HTH-type transcriptional repressor FabR, at 226,234 to 226,872
_RS00980
DDA3937_RS00985: DDA3937_RS00985 - YijD family membrane protein, at 226,887 to 227,261
_RS00985
Position (kb) 224
225
226
227 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 223.631 kb on + strand at 223.631 kb on + strand at 223.642 kb on + strand at 223.642 kb on + strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.992 kb on + strand, within DDA3937_RS00970 at 223.992 kb on + strand at 223.993 kb on - strand, within DDA3937_RS00970 at 224.333 kb on + strand, within DDA3937_RS00970 at 224.337 kb on - strand, within DDA3937_RS00970 at 224.392 kb on - strand, within DDA3937_RS00970 at 224.392 kb on - strand, within DDA3937_RS00970 at 224.404 kb on - strand, within DDA3937_RS00970 at 224.439 kb on + strand, within DDA3937_RS00970 at 224.440 kb on - strand, within DDA3937_RS00970 at 224.440 kb on - strand, within DDA3937_RS00970 at 224.470 kb on - strand at 224.470 kb on - strand at 224.542 kb on - strand at 224.576 kb on - strand at 224.578 kb on + strand at 224.579 kb on - strand at 224.579 kb on - strand at 224.911 kb on - strand, within DDA3937_RS00975 at 224.977 kb on - strand, within DDA3937_RS00975 at 225.538 kb on - strand, within DDA3937_RS00975 at 225.659 kb on - strand, within DDA3937_RS00975 at 225.910 kb on + strand at 225.924 kb on - strand at 226.015 kb on - strand at 226.053 kb on + strand at 226.054 kb on - strand at 226.077 kb on - strand at 226.093 kb on + strand at 226.117 kb on + strand at 226.117 kb on + strand at 226.142 kb on - strand at 226.142 kb on - strand at 226.144 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.168 kb on + strand at 226.168 kb on + strand at 226.168 kb on + strand at 226.169 kb on - strand at 226.176 kb on - strand at 226.185 kb on + strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.204 kb on + strand at 226.204 kb on + strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.232 kb on + strand at 226.301 kb on + strand, within DDA3937_RS00980 at 226.301 kb on + strand, within DDA3937_RS00980 at 226.302 kb on - strand, within DDA3937_RS00980 at 226.302 kb on - strand, within DDA3937_RS00980 at 226.368 kb on + strand, within DDA3937_RS00980 at 226.379 kb on - strand, within DDA3937_RS00980 at 226.473 kb on + strand, within DDA3937_RS00980 at 226.473 kb on + strand, within DDA3937_RS00980 at 226.539 kb on + strand, within DDA3937_RS00980 at 226.539 kb on + strand, within DDA3937_RS00980 at 226.608 kb on - strand, within DDA3937_RS00980 at 226.629 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.669 kb on - strand, within DDA3937_RS00980 at 226.718 kb on + strand, within DDA3937_RS00980 at 226.719 kb on - strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.819 kb on + strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.823 kb on - strand at 226.823 kb on - strand at 226.871 kb on - strand at 226.900 kb on + strand at 226.901 kb on - strand at 226.982 kb on + strand, within DDA3937_RS00985 at 226.982 kb on + strand, within DDA3937_RS00985 at 226.983 kb on - strand, within DDA3937_RS00985 at 226.983 kb on - strand, within DDA3937_RS00985 at 227.017 kb on + strand, within DDA3937_RS00985
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 223,631 + -2.3 223,631 + -2.0 223,642 + -2.4 223,642 + +0.1 223,643 - -2.8 223,643 - -1.4 223,643 - -1.9 223,992 + DDA3937_RS00970 0.40 -2.3 223,992 + +0.1 223,993 - DDA3937_RS00970 0.40 -1.9 224,333 + DDA3937_RS00970 0.77 -1.5 224,337 - DDA3937_RS00970 0.77 +2.4 224,392 - DDA3937_RS00970 0.83 -3.7 224,392 - DDA3937_RS00970 0.83 -2.3 224,404 - DDA3937_RS00970 0.85 -2.4 224,439 + DDA3937_RS00970 0.89 -4.4 224,440 - DDA3937_RS00970 0.89 -1.7 224,440 - DDA3937_RS00970 0.89 -1.8 224,470 - -2.5 224,470 - -1.2 224,542 - +0.3 224,576 - -0.8 224,578 + +0.5 224,579 - -3.1 224,579 - +3.1 224,911 - DDA3937_RS00975 0.20 +1.8 224,977 - DDA3937_RS00975 0.25 +1.6 225,538 - DDA3937_RS00975 0.65 +3.3 225,659 - DDA3937_RS00975 0.74 +3.1 225,910 + +0.4 225,924 - +1.6 226,015 - +1.8 226,053 + +4.4 226,054 - +4.0 226,077 - +1.6 226,093 + +1.7 226,117 + -3.1 226,117 + -1.4 226,142 - -1.9 226,142 - +0.3 226,144 + -1.8 226,164 + -1.3 226,164 + -1.0 226,164 + -0.9 226,164 + -0.1 226,164 + +1.8 226,164 + -0.7 226,164 + -1.4 226,164 + -1.4 226,164 + -1.4 226,164 + -1.8 226,165 - +0.4 226,165 - -2.8 226,165 - -0.9 226,165 - +1.6 226,165 - +2.1 226,165 - -0.7 226,165 - -1.5 226,165 - +1.0 226,168 + -2.3 226,168 + +1.0 226,168 + -1.6 226,169 - -0.3 226,176 - -3.3 226,185 + -0.9 226,186 - +1.2 226,186 - -2.9 226,186 - +1.6 226,187 + +0.6 226,187 + -2.3 226,187 + +1.6 226,187 + -1.4 226,187 + -2.4 226,188 - -2.5 226,188 - -1.7 226,188 - -1.4 226,188 - -1.0 226,188 - -0.9 226,188 - -0.2 226,188 - -1.3 226,188 - -0.4 226,188 - +2.0 226,188 - -3.2 226,188 - +0.2 226,188 - +1.4 226,204 + -1.5 226,204 + -0.4 226,205 - -1.0 226,205 - -0.8 226,205 - -1.7 226,205 - -0.7 226,205 - -0.5 226,205 - +0.8 226,232 + -0.7 226,301 + DDA3937_RS00980 0.10 +0.4 226,301 + DDA3937_RS00980 0.10 +1.4 226,302 - DDA3937_RS00980 0.11 -0.2 226,302 - DDA3937_RS00980 0.11 -3.0 226,368 + DDA3937_RS00980 0.21 +0.3 226,379 - DDA3937_RS00980 0.23 -0.7 226,473 + DDA3937_RS00980 0.37 +0.6 226,473 + DDA3937_RS00980 0.37 +0.2 226,539 + DDA3937_RS00980 0.48 -0.2 226,539 + DDA3937_RS00980 0.48 +0.1 226,608 - DDA3937_RS00980 0.59 -0.4 226,629 + DDA3937_RS00980 0.62 -0.2 226,648 + DDA3937_RS00980 0.65 +0.6 226,648 + DDA3937_RS00980 0.65 +0.8 226,648 + DDA3937_RS00980 0.65 -0.6 226,648 + DDA3937_RS00980 0.65 +0.3 226,649 - DDA3937_RS00980 0.65 -0.5 226,649 - DDA3937_RS00980 0.65 -1.1 226,649 - DDA3937_RS00980 0.65 +0.4 226,669 - DDA3937_RS00980 0.68 -2.0 226,718 + DDA3937_RS00980 0.76 +0.2 226,719 - DDA3937_RS00980 0.76 -1.4 226,800 + DDA3937_RS00980 0.89 +0.1 226,800 + DDA3937_RS00980 0.89 +0.4 226,800 + DDA3937_RS00980 0.89 +0.5 226,800 + DDA3937_RS00980 0.89 -0.5 226,801 - DDA3937_RS00980 0.89 -0.6 226,801 - DDA3937_RS00980 0.89 -0.6 226,801 - DDA3937_RS00980 0.89 +0.1 226,801 - DDA3937_RS00980 0.89 -1.4 226,801 - DDA3937_RS00980 0.89 -3.2 226,801 - DDA3937_RS00980 0.89 -1.9 226,819 + -0.3 226,820 - -0.6 226,820 - -0.7 226,820 - +3.5 226,820 - +2.2 226,820 - -3.8 226,820 - -1.5 226,822 + +0.1 226,822 + -1.5 226,822 + -0.2 226,822 + +0.7 226,823 - -2.9 226,823 - +0.2 226,871 - +0.1 226,900 + -0.9 226,901 - +0.9 226,982 + DDA3937_RS00985 0.25 +1.0 226,982 + DDA3937_RS00985 0.25 -3.8 226,983 - DDA3937_RS00985 0.26 +1.0 226,983 - DDA3937_RS00985 0.26 +2.1 227,017 + DDA3937_RS00985 0.35 +0.1
Or see this region's nucleotide sequence