Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00860 and DDA3937_RS00865 are separated by 152 nucleotides DDA3937_RS00865 and DDA3937_RS00870 are separated by 141 nucleotides DDA3937_RS00870 and DDA3937_RS00875 are separated by 144 nucleotides
DDA3937_RS00860: DDA3937_RS00860 - alkaline phosphatase, at 199,259 to 200,698
_RS00860
DDA3937_RS00865: DDA3937_RS00865 - triose-phosphate isomerase, at 200,851 to 201,621
_RS00865
DDA3937_RS00870: DDA3937_RS00870 - YiiQ family protein, at 201,763 to 202,359
_RS00870
DDA3937_RS00875: DDA3937_RS00875 - DUF805 domain-containing protein, at 202,504 to 202,929
_RS00875
Position (kb) 200
201
202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 199.950 kb on + strand, within DDA3937_RS00860 at 200.221 kb on + strand, within DDA3937_RS00860 at 200.222 kb on - strand, within DDA3937_RS00860 at 200.262 kb on + strand, within DDA3937_RS00860 at 200.263 kb on - strand, within DDA3937_RS00860 at 200.317 kb on - strand, within DDA3937_RS00860 at 200.317 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.418 kb on + strand, within DDA3937_RS00860 at 200.418 kb on + strand, within DDA3937_RS00860 at 200.419 kb on - strand, within DDA3937_RS00860 at 200.423 kb on - strand, within DDA3937_RS00860 at 200.587 kb on - strand at 200.715 kb on + strand at 200.716 kb on - strand at 200.716 kb on - strand at 200.720 kb on - strand at 200.726 kb on + strand at 200.726 kb on + strand at 200.726 kb on + strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.740 kb on - strand at 200.746 kb on + strand at 200.801 kb on + strand at 201.320 kb on + strand, within DDA3937_RS00865 at 201.650 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.691 kb on + strand at 201.692 kb on - strand at 201.705 kb on + strand at 201.705 kb on + strand at 201.706 kb on - strand at 201.706 kb on - strand at 201.706 kb on - strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.748 kb on + strand at 201.839 kb on + strand, within DDA3937_RS00870 at 201.839 kb on + strand, within DDA3937_RS00870 at 201.866 kb on + strand, within DDA3937_RS00870 at 201.866 kb on + strand, within DDA3937_RS00870 at 201.867 kb on - strand, within DDA3937_RS00870 at 201.942 kb on + strand, within DDA3937_RS00870 at 201.943 kb on - strand, within DDA3937_RS00870 at 201.968 kb on + strand, within DDA3937_RS00870 at 201.969 kb on - strand, within DDA3937_RS00870 at 202.029 kb on + strand, within DDA3937_RS00870 at 202.045 kb on + strand, within DDA3937_RS00870 at 202.045 kb on + strand, within DDA3937_RS00870 at 202.046 kb on - strand, within DDA3937_RS00870 at 202.082 kb on + strand, within DDA3937_RS00870 at 202.083 kb on - strand, within DDA3937_RS00870 at 202.190 kb on + strand, within DDA3937_RS00870 at 202.190 kb on + strand, within DDA3937_RS00870 at 202.191 kb on - strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.313 kb on - strand at 202.368 kb on + strand at 202.368 kb on + strand at 202.369 kb on - strand at 202.369 kb on - strand at 202.371 kb on + strand at 202.372 kb on - strand at 202.372 kb on - strand at 202.381 kb on + strand at 202.381 kb on + strand at 202.381 kb on + strand at 202.382 kb on - strand at 202.382 kb on - strand at 202.459 kb on + strand at 202.459 kb on + strand at 202.459 kb on + strand at 202.460 kb on - strand at 202.460 kb on - strand at 202.464 kb on + strand at 202.465 kb on - strand at 202.465 kb on - strand at 202.478 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 199,950 + DDA3937_RS00860 0.48 -2.4 200,221 + DDA3937_RS00860 0.67 -0.9 200,222 - DDA3937_RS00860 0.67 -0.7 200,262 + DDA3937_RS00860 0.70 -1.0 200,263 - DDA3937_RS00860 0.70 +1.6 200,317 - DDA3937_RS00860 0.73 -0.7 200,317 - DDA3937_RS00860 0.73 +1.1 200,359 - DDA3937_RS00860 0.76 +1.3 200,359 - DDA3937_RS00860 0.76 -0.3 200,359 - DDA3937_RS00860 0.76 +1.5 200,418 + DDA3937_RS00860 0.80 -2.3 200,418 + DDA3937_RS00860 0.80 -2.1 200,419 - DDA3937_RS00860 0.81 +0.5 200,423 - DDA3937_RS00860 0.81 -2.2 200,587 - +1.2 200,715 + -0.8 200,716 - +0.6 200,716 - -0.7 200,720 - +1.0 200,726 + +0.0 200,726 + -0.6 200,726 + -3.5 200,727 - +1.7 200,727 - +0.4 200,727 - -2.2 200,727 - +0.7 200,727 - +0.3 200,740 - +1.1 200,746 + -2.9 200,801 + -0.1 201,320 + DDA3937_RS00865 0.61 +1.3 201,650 - +1.2 201,657 - -1.2 201,657 - -3.0 201,657 - +1.8 201,657 - +0.8 201,691 + +2.9 201,692 - -3.7 201,705 + -2.2 201,705 + +2.3 201,706 - +0.2 201,706 - -1.8 201,706 - +0.4 201,708 + -0.9 201,708 + +1.0 201,708 + -1.4 201,708 + +0.9 201,708 + -0.2 201,708 + +0.7 201,708 + -1.2 201,708 + -0.9 201,709 - +0.5 201,709 - -0.5 201,709 - -2.3 201,709 - +0.1 201,709 - +1.3 201,709 - -2.0 201,710 + +1.3 201,710 + -1.0 201,710 + -0.2 201,710 + -1.2 201,711 - -3.0 201,711 - -1.5 201,711 - -2.7 201,711 - +1.7 201,748 + +0.4 201,839 + DDA3937_RS00870 0.13 -0.4 201,839 + DDA3937_RS00870 0.13 -2.7 201,866 + DDA3937_RS00870 0.17 +0.4 201,866 + DDA3937_RS00870 0.17 -3.2 201,867 - DDA3937_RS00870 0.17 +0.1 201,942 + DDA3937_RS00870 0.30 -1.0 201,943 - DDA3937_RS00870 0.30 +3.0 201,968 + DDA3937_RS00870 0.34 +0.6 201,969 - DDA3937_RS00870 0.35 -0.9 202,029 + DDA3937_RS00870 0.45 +0.1 202,045 + DDA3937_RS00870 0.47 +0.9 202,045 + DDA3937_RS00870 0.47 -4.1 202,046 - DDA3937_RS00870 0.47 +1.0 202,082 + DDA3937_RS00870 0.53 -0.5 202,083 - DDA3937_RS00870 0.54 +3.4 202,190 + DDA3937_RS00870 0.72 +0.8 202,190 + DDA3937_RS00870 0.72 +0.5 202,191 - DDA3937_RS00870 0.72 +0.5 202,207 + DDA3937_RS00870 0.74 +1.7 202,207 + DDA3937_RS00870 0.74 -3.6 202,207 + DDA3937_RS00870 0.74 +1.0 202,207 + DDA3937_RS00870 0.74 +0.8 202,207 + DDA3937_RS00870 0.74 -0.3 202,208 - DDA3937_RS00870 0.75 -2.2 202,208 - DDA3937_RS00870 0.75 +0.5 202,208 - DDA3937_RS00870 0.75 +1.3 202,208 - DDA3937_RS00870 0.75 +1.9 202,313 - -1.4 202,368 + +2.5 202,368 + +0.5 202,369 - +2.3 202,369 - +0.6 202,371 + +0.4 202,372 - +1.1 202,372 - -0.4 202,381 + -2.3 202,381 + -0.9 202,381 + -0.4 202,382 - -1.0 202,382 - -0.7 202,459 + +0.2 202,459 + -3.3 202,459 + -1.1 202,460 - -0.2 202,460 - -2.3 202,464 + -0.1 202,465 - +0.0 202,465 - -2.3 202,478 - -0.2 202,512 - -4.2 202,512 - -2.1 202,512 - -0.7 202,512 - -1.4
Or see this region's nucleotide sequence