Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00825 and DDA3937_RS00830 overlap by 4 nucleotides DDA3937_RS00830 and DDA3937_RS00835 are separated by 202 nucleotides DDA3937_RS00835 and DDA3937_RS00840 are separated by 129 nucleotides
DDA3937_RS00825: DDA3937_RS00825 - tail fiber assembly protein, at 193,070 to 193,465
_RS00825
DDA3937_RS00830: DDA3937_RS00830 - NUDIX domain-containing protein, at 193,462 to 193,926
_RS00830
DDA3937_RS00835: DDA3937_RS00835 - 2TM domain-containing protein, at 194,129 to 194,599
_RS00835
DDA3937_RS00840: DDA3937_RS00840 - CDF family cation-efflux transporter FieF, at 194,729 to 195,631
_RS00840
Position (kb) 194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 193.205 kb on + strand, within DDA3937_RS00825 at 193.211 kb on + strand, within DDA3937_RS00825 at 193.212 kb on - strand, within DDA3937_RS00825 at 193.212 kb on - strand, within DDA3937_RS00825 at 193.229 kb on - strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.336 kb on - strand, within DDA3937_RS00825 at 193.336 kb on - strand, within DDA3937_RS00825 at 193.348 kb on + strand, within DDA3937_RS00825 at 193.363 kb on + strand, within DDA3937_RS00825 at 193.391 kb on + strand, within DDA3937_RS00825 at 193.391 kb on + strand, within DDA3937_RS00825 at 193.392 kb on - strand, within DDA3937_RS00825 at 193.411 kb on + strand, within DDA3937_RS00825 at 193.473 kb on + strand at 193.473 kb on + strand at 193.473 kb on + strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.523 kb on + strand, within DDA3937_RS00830 at 193.823 kb on + strand, within DDA3937_RS00830 at 193.823 kb on + strand, within DDA3937_RS00830 at 193.867 kb on + strand, within DDA3937_RS00830 at 193.868 kb on - strand, within DDA3937_RS00830 at 193.868 kb on - strand, within DDA3937_RS00830 at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.943 kb on + strand at 193.943 kb on + strand at 193.943 kb on + strand at 193.944 kb on - strand at 193.950 kb on + strand at 193.950 kb on + strand at 193.958 kb on - strand at 194.073 kb on + strand at 194.073 kb on + strand at 194.073 kb on + strand at 194.074 kb on - strand at 194.074 kb on - strand at 194.074 kb on - strand at 194.115 kb on - strand at 194.115 kb on - strand at 194.478 kb on + strand, within DDA3937_RS00835 at 194.479 kb on - strand at 194.479 kb on - strand, within DDA3937_RS00835 at 194.479 kb on - strand, within DDA3937_RS00835 at 194.586 kb on + strand at 194.598 kb on - strand at 194.625 kb on + strand at 194.626 kb on - strand at 194.626 kb on - strand at 194.626 kb on - strand at 194.662 kb on + strand at 194.662 kb on + strand at 194.662 kb on + strand at 194.663 kb on - strand at 194.697 kb on - strand at 194.698 kb on + strand at 194.698 kb on + strand at 194.698 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.724 kb on - strand at 194.728 kb on + strand at 194.729 kb on - strand at 194.729 kb on - strand at 194.729 kb on - strand at 194.742 kb on - strand at 194.796 kb on + strand at 194.797 kb on - strand at 194.803 kb on + strand at 194.804 kb on - strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.826 kb on - strand, within DDA3937_RS00840 at 194.912 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.942 kb on - strand, within DDA3937_RS00840 at 194.942 kb on - strand at 194.942 kb on - strand, within DDA3937_RS00840 at 194.942 kb on - strand, within DDA3937_RS00840 at 194.942 kb on - strand, within DDA3937_RS00840 at 195.088 kb on + strand, within DDA3937_RS00840 at 195.088 kb on + strand, within DDA3937_RS00840 at 195.148 kb on + strand, within DDA3937_RS00840 at 195.157 kb on + strand, within DDA3937_RS00840 at 195.157 kb on + strand, within DDA3937_RS00840 at 195.158 kb on - strand, within DDA3937_RS00840 at 195.158 kb on - strand, within DDA3937_RS00840 at 195.189 kb on - strand, within DDA3937_RS00840 at 195.253 kb on + strand, within DDA3937_RS00840 at 195.253 kb on + strand, within DDA3937_RS00840 at 195.253 kb on + strand, within DDA3937_RS00840 at 195.254 kb on - strand, within DDA3937_RS00840 at 195.254 kb on - strand, within DDA3937_RS00840 at 195.295 kb on + strand, within DDA3937_RS00840 at 195.295 kb on + strand, within DDA3937_RS00840 at 195.296 kb on - strand, within DDA3937_RS00840 at 195.300 kb on + strand, within DDA3937_RS00840 at 195.300 kb on + strand, within DDA3937_RS00840 at 195.324 kb on - strand, within DDA3937_RS00840 at 195.324 kb on - strand, within DDA3937_RS00840 at 195.388 kb on + strand, within DDA3937_RS00840 at 195.388 kb on + strand, within DDA3937_RS00840 at 195.389 kb on - strand at 195.411 kb on + strand at 195.411 kb on + strand, within DDA3937_RS00840 at 195.569 kb on - strand at 195.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 193,205 + DDA3937_RS00825 0.34 +1.8 193,211 + DDA3937_RS00825 0.36 -1.6 193,212 - DDA3937_RS00825 0.36 +0.2 193,212 - DDA3937_RS00825 0.36 -1.4 193,229 - DDA3937_RS00825 0.40 -0.3 193,256 + DDA3937_RS00825 0.47 +3.2 193,256 + DDA3937_RS00825 0.47 -3.0 193,256 + DDA3937_RS00825 0.47 -1.4 193,256 + DDA3937_RS00825 0.47 +1.3 193,257 - DDA3937_RS00825 0.47 +1.5 193,257 - DDA3937_RS00825 0.47 -2.5 193,257 - DDA3937_RS00825 0.47 -0.7 193,258 + DDA3937_RS00825 0.47 -1.4 193,258 + DDA3937_RS00825 0.47 +1.1 193,258 + DDA3937_RS00825 0.47 +1.0 193,258 + DDA3937_RS00825 0.47 -1.2 193,258 + DDA3937_RS00825 0.47 +0.1 193,259 - DDA3937_RS00825 0.48 -2.7 193,259 - DDA3937_RS00825 0.48 +0.4 193,259 - DDA3937_RS00825 0.48 -0.3 193,290 + DDA3937_RS00825 0.56 -1.2 193,290 + DDA3937_RS00825 0.56 +1.0 193,290 + DDA3937_RS00825 0.56 -2.9 193,290 + DDA3937_RS00825 0.56 -1.4 193,290 + DDA3937_RS00825 0.56 +0.4 193,335 + DDA3937_RS00825 0.67 -0.7 193,335 + DDA3937_RS00825 0.67 +0.8 193,335 + DDA3937_RS00825 0.67 +0.0 193,336 - DDA3937_RS00825 0.67 +0.3 193,336 - DDA3937_RS00825 0.67 -0.3 193,348 + DDA3937_RS00825 0.70 -0.3 193,363 + DDA3937_RS00825 0.74 -2.3 193,391 + DDA3937_RS00825 0.81 -3.4 193,391 + DDA3937_RS00825 0.81 -3.4 193,392 - DDA3937_RS00825 0.81 +1.4 193,411 + DDA3937_RS00825 0.86 +1.5 193,473 + +0.6 193,473 + +0.1 193,473 + +0.6 193,474 - +0.0 193,474 - +2.2 193,474 - -2.1 193,474 - +2.8 193,474 - +0.6 193,523 + DDA3937_RS00830 0.13 -1.8 193,823 + DDA3937_RS00830 0.78 +0.1 193,823 + DDA3937_RS00830 0.78 -0.1 193,867 + DDA3937_RS00830 0.87 -0.7 193,868 - DDA3937_RS00830 0.87 +0.6 193,868 - DDA3937_RS00830 0.87 +1.7 193,941 + -2.5 193,941 + -0.4 193,941 + -2.3 193,941 + +2.1 193,941 + -0.8 193,942 - +0.2 193,942 - +1.1 193,942 - +0.0 193,942 - +2.6 193,943 + -0.5 193,943 + -3.0 193,943 + -0.7 193,944 - -3.0 193,950 + -2.8 193,950 + -2.8 193,958 - -0.1 194,073 + +1.8 194,073 + -0.6 194,073 + +0.2 194,074 - +0.3 194,074 - +0.6 194,074 - +2.2 194,115 - -2.0 194,115 - -0.4 194,478 + DDA3937_RS00835 0.74 -2.4 194,479 - -1.2 194,479 - DDA3937_RS00835 0.74 -1.7 194,479 - DDA3937_RS00835 0.74 -1.4 194,586 + -2.5 194,598 - -2.9 194,625 + +0.8 194,626 - -1.8 194,626 - -2.3 194,626 - -0.3 194,662 + +0.6 194,662 + -2.3 194,662 + -2.0 194,663 - -0.2 194,697 - +0.7 194,698 + -0.4 194,698 + -3.2 194,698 + -0.9 194,723 + +0.4 194,723 + +2.2 194,723 + +0.6 194,723 + +0.7 194,724 - -1.0 194,728 + +4.7 194,729 - -1.7 194,729 - +0.8 194,729 - -1.0 194,742 - +0.3 194,796 + +0.1 194,797 - +2.0 194,803 + +0.4 194,804 - -1.1 194,813 + +0.8 194,813 + +0.8 194,813 + +0.2 194,813 + -3.7 194,813 + -2.7 194,813 + +0.7 194,813 + -2.5 194,814 - -2.3 194,814 - -0.7 194,814 - +1.5 194,814 - -0.8 194,814 - -0.9 194,825 + DDA3937_RS00840 0.11 +1.8 194,825 + DDA3937_RS00840 0.11 +2.1 194,825 + DDA3937_RS00840 0.11 +2.0 194,825 + DDA3937_RS00840 0.11 -0.9 194,826 - DDA3937_RS00840 0.11 +0.8 194,912 + DDA3937_RS00840 0.20 +0.8 194,941 + DDA3937_RS00840 0.23 +2.4 194,941 + DDA3937_RS00840 0.23 +1.2 194,941 + DDA3937_RS00840 0.23 -0.9 194,941 + DDA3937_RS00840 0.23 -0.5 194,941 + DDA3937_RS00840 0.23 +0.0 194,941 + DDA3937_RS00840 0.23 +0.1 194,941 + DDA3937_RS00840 0.23 +1.0 194,941 + DDA3937_RS00840 0.23 -2.4 194,941 + DDA3937_RS00840 0.23 -1.5 194,942 - DDA3937_RS00840 0.24 -0.7 194,942 - +0.1 194,942 - DDA3937_RS00840 0.24 +3.2 194,942 - DDA3937_RS00840 0.24 -0.5 194,942 - DDA3937_RS00840 0.24 -1.4 195,088 + DDA3937_RS00840 0.40 +2.2 195,088 + DDA3937_RS00840 0.40 +0.7 195,148 + DDA3937_RS00840 0.46 +0.4 195,157 + DDA3937_RS00840 0.47 -2.3 195,157 + DDA3937_RS00840 0.47 +0.4 195,158 - DDA3937_RS00840 0.48 -0.9 195,158 - DDA3937_RS00840 0.48 -3.1 195,189 - DDA3937_RS00840 0.51 +1.1 195,253 + DDA3937_RS00840 0.58 -2.5 195,253 + DDA3937_RS00840 0.58 +1.0 195,253 + DDA3937_RS00840 0.58 -1.7 195,254 - DDA3937_RS00840 0.58 -2.5 195,254 - DDA3937_RS00840 0.58 -0.9 195,295 + DDA3937_RS00840 0.63 +3.0 195,295 + DDA3937_RS00840 0.63 -0.9 195,296 - DDA3937_RS00840 0.63 -0.9 195,300 + DDA3937_RS00840 0.63 +2.0 195,300 + DDA3937_RS00840 0.63 -3.2 195,324 - DDA3937_RS00840 0.66 +0.9 195,324 - DDA3937_RS00840 0.66 -2.1 195,388 + DDA3937_RS00840 0.73 -2.2 195,388 + DDA3937_RS00840 0.73 +1.1 195,389 - +0.1 195,411 + +0.1 195,411 + DDA3937_RS00840 0.76 -1.5 195,569 - -1.1 195,569 - +0.3
Or see this region's nucleotide sequence