Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00670 and DDA3937_RS00675 overlap by 4 nucleotides DDA3937_RS00675 and DDA3937_RS00680 are separated by 6 nucleotides DDA3937_RS00680 and DDA3937_RS00685 are separated by 70 nucleotides
DDA3937_RS00670: DDA3937_RS00670 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 154,196 to 155,470
_RS00670
DDA3937_RS00675: DDA3937_RS00675 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 155,467 to 156,237
_RS00675
DDA3937_RS00680: DDA3937_RS00680 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 156,244 to 156,945
_RS00680
DDA3937_RS00685: DDA3937_RS00685 - PLP-dependent aminotransferase family protein, at 157,016 to 158,200
_RS00685
Position (kb) 156
157 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 155.259 kb on + strand, within DDA3937_RS00670 at 155.260 kb on - strand, within DDA3937_RS00670 at 155.348 kb on + strand at 155.349 kb on - strand at 155.349 kb on - strand at 155.483 kb on + strand at 155.484 kb on - strand at 155.897 kb on + strand, within DDA3937_RS00675 at 155.897 kb on + strand, within DDA3937_RS00675 at 155.897 kb on + strand, within DDA3937_RS00675 at 155.897 kb on + strand, within DDA3937_RS00675 at 155.898 kb on - strand, within DDA3937_RS00675 at 155.898 kb on - strand, within DDA3937_RS00675 at 155.898 kb on - strand, within DDA3937_RS00675 at 155.898 kb on - strand, within DDA3937_RS00675 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.195 kb on + strand at 156.195 kb on + strand at 156.220 kb on + strand at 156.221 kb on - strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.275 kb on - strand at 156.312 kb on + strand at 156.592 kb on + strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.614 kb on - strand, within DDA3937_RS00680 at 156.853 kb on + strand, within DDA3937_RS00680 at 156.854 kb on - strand, within DDA3937_RS00680 at 156.905 kb on + strand at 156.983 kb on - strand at 157.046 kb on - strand at 157.252 kb on + strand, within DDA3937_RS00685 at 157.369 kb on + strand, within DDA3937_RS00685 at 157.380 kb on + strand, within DDA3937_RS00685 at 157.394 kb on + strand, within DDA3937_RS00685 at 157.394 kb on + strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.407 kb on + strand, within DDA3937_RS00685 at 157.437 kb on + strand, within DDA3937_RS00685 at 157.437 kb on + strand, within DDA3937_RS00685 at 157.438 kb on - strand, within DDA3937_RS00685 at 157.438 kb on - strand, within DDA3937_RS00685 at 157.521 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.796 kb on - strand, within DDA3937_RS00685 at 157.796 kb on - strand, within DDA3937_RS00685 at 157.852 kb on + strand, within DDA3937_RS00685 at 157.862 kb on + strand, within DDA3937_RS00685 at 157.862 kb on + strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.865 kb on + strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 155,259 + DDA3937_RS00670 0.83 -0.3 155,260 - DDA3937_RS00670 0.83 -2.7 155,348 + +0.9 155,349 - -0.3 155,349 - +2.2 155,483 + +0.3 155,484 - -2.1 155,897 + DDA3937_RS00675 0.56 -3.5 155,897 + DDA3937_RS00675 0.56 -3.7 155,897 + DDA3937_RS00675 0.56 +0.0 155,897 + DDA3937_RS00675 0.56 -1.2 155,898 - DDA3937_RS00675 0.56 -2.6 155,898 - DDA3937_RS00675 0.56 -1.1 155,898 - DDA3937_RS00675 0.56 +0.8 155,898 - DDA3937_RS00675 0.56 +0.0 156,142 + DDA3937_RS00675 0.88 +1.6 156,142 + DDA3937_RS00675 0.88 -0.2 156,142 + DDA3937_RS00675 0.88 -0.9 156,150 - DDA3937_RS00675 0.89 -1.8 156,150 - DDA3937_RS00675 0.89 +2.7 156,150 - DDA3937_RS00675 0.89 -3.0 156,150 - DDA3937_RS00675 0.89 -2.7 156,195 + -0.1 156,195 + -2.4 156,220 + +1.4 156,221 - -1.6 156,243 + +1.2 156,243 + +0.5 156,243 + +2.0 156,243 + -3.4 156,243 + -1.0 156,243 + -2.5 156,243 + -2.0 156,244 - -0.7 156,244 - -1.9 156,244 - -0.6 156,244 - -0.5 156,275 - -0.8 156,312 + -2.6 156,592 + DDA3937_RS00680 0.50 -0.8 156,593 - DDA3937_RS00680 0.50 -0.2 156,593 - DDA3937_RS00680 0.50 -1.0 156,593 - DDA3937_RS00680 0.50 -1.0 156,613 + DDA3937_RS00680 0.53 -0.7 156,613 + DDA3937_RS00680 0.53 -0.4 156,613 + DDA3937_RS00680 0.53 +0.6 156,613 + DDA3937_RS00680 0.53 +0.4 156,614 - DDA3937_RS00680 0.53 -0.7 156,853 + DDA3937_RS00680 0.87 -2.6 156,854 - DDA3937_RS00680 0.87 -0.1 156,905 + -2.3 156,983 - -2.1 157,046 - -1.6 157,252 + DDA3937_RS00685 0.20 -0.9 157,369 + DDA3937_RS00685 0.30 -0.4 157,380 + DDA3937_RS00685 0.31 +1.2 157,394 + DDA3937_RS00685 0.32 -2.7 157,394 + DDA3937_RS00685 0.32 -2.8 157,395 - DDA3937_RS00685 0.32 -0.7 157,395 - DDA3937_RS00685 0.32 +0.2 157,395 - DDA3937_RS00685 0.32 +0.4 157,407 + DDA3937_RS00685 0.33 -3.4 157,437 + DDA3937_RS00685 0.36 -3.6 157,437 + DDA3937_RS00685 0.36 -0.6 157,438 - DDA3937_RS00685 0.36 -1.4 157,438 - DDA3937_RS00685 0.36 -0.7 157,521 - DDA3937_RS00685 0.43 -0.7 157,719 - DDA3937_RS00685 0.59 -0.4 157,719 - DDA3937_RS00685 0.59 +1.3 157,719 - DDA3937_RS00685 0.59 +0.9 157,719 - DDA3937_RS00685 0.59 +0.6 157,719 - DDA3937_RS00685 0.59 -0.0 157,719 - DDA3937_RS00685 0.59 +0.6 157,719 - DDA3937_RS00685 0.59 +2.6 157,720 + DDA3937_RS00685 0.59 +0.8 157,720 + DDA3937_RS00685 0.59 +2.6 157,720 + DDA3937_RS00685 0.59 -1.8 157,721 - DDA3937_RS00685 0.59 +1.1 157,721 - DDA3937_RS00685 0.59 -4.4 157,721 - DDA3937_RS00685 0.59 -0.4 157,721 - DDA3937_RS00685 0.59 -0.2 157,721 - DDA3937_RS00685 0.59 +1.0 157,721 - DDA3937_RS00685 0.59 -0.7 157,721 - DDA3937_RS00685 0.59 -0.7 157,721 - DDA3937_RS00685 0.59 -1.5 157,721 - DDA3937_RS00685 0.59 +0.7 157,796 - DDA3937_RS00685 0.66 -0.8 157,796 - DDA3937_RS00685 0.66 -2.8 157,852 + DDA3937_RS00685 0.71 +0.6 157,862 + DDA3937_RS00685 0.71 +1.3 157,862 + DDA3937_RS00685 0.71 -2.2 157,863 - DDA3937_RS00685 0.71 -0.4 157,863 - DDA3937_RS00685 0.71 -0.1 157,863 - DDA3937_RS00685 0.71 +1.1 157,865 + DDA3937_RS00685 0.72 -0.9 157,866 - DDA3937_RS00685 0.72 -2.3 157,866 - DDA3937_RS00685 0.72 -1.0 157,866 - DDA3937_RS00685 0.72 -3.0
Or see this region's nucleotide sequence