Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00615 and DDA3937_RS00620 are separated by 271 nucleotides DDA3937_RS00620 and DDA3937_RS00625 are separated by 60 nucleotides DDA3937_RS00625 and DDA3937_RS00630 overlap by 11 nucleotides DDA3937_RS00630 and DDA3937_RS00635 are separated by 311 nucleotides
DDA3937_RS00615: DDA3937_RS00615 - lysoplasmalogenase, at 144,435 to 145,064
_RS00615
DDA3937_RS00620: DDA3937_RS00620 - DUF1820 family protein, at 145,336 to 145,662
_RS00620
DDA3937_RS00625: DDA3937_RS00625 - DUF1145 family protein, at 145,723 to 146,004
_RS00625
DDA3937_RS00630: DDA3937_RS00630 - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 145,994 to 146,617
_RS00630
DDA3937_RS00635: DDA3937_RS00635 - signal recognition particle-docking protein FtsY, at 146,929 to 148,269
_RS00635
Position (kb) 145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 144.794 kb on + strand, within DDA3937_RS00615 at 144.794 kb on + strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.796 kb on + strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.818 kb on - strand, within DDA3937_RS00615 at 144.818 kb on - strand, within DDA3937_RS00615 at 144.960 kb on + strand at 144.960 kb on + strand, within DDA3937_RS00615 at 144.961 kb on - strand, within DDA3937_RS00615 at 144.974 kb on + strand, within DDA3937_RS00615 at 144.974 kb on + strand, within DDA3937_RS00615 at 144.974 kb on + strand at 144.975 kb on - strand, within DDA3937_RS00615 at 144.975 kb on - strand, within DDA3937_RS00615 at 145.006 kb on + strand at 145.007 kb on - strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.022 kb on - strand at 145.022 kb on - strand at 145.022 kb on - strand at 145.022 kb on - strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.076 kb on - strand at 145.132 kb on - strand at 145.139 kb on + strand at 145.140 kb on - strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.172 kb on - strand at 145.172 kb on - strand at 145.172 kb on - strand at 145.172 kb on - strand at 145.172 kb on - strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.177 kb on + strand at 145.177 kb on + strand at 145.178 kb on - strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.295 kb on + strand at 145.302 kb on - strand at 145.333 kb on + strand at 145.333 kb on + strand at 145.333 kb on + strand at 145.334 kb on - strand at 145.353 kb on - strand at 145.383 kb on + strand, within DDA3937_RS00620 at 145.390 kb on + strand, within DDA3937_RS00620 at 145.391 kb on - strand, within DDA3937_RS00620 at 145.391 kb on - strand, within DDA3937_RS00620 at 145.391 kb on - strand, within DDA3937_RS00620 at 145.391 kb on - strand at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.478 kb on + strand, within DDA3937_RS00620 at 145.479 kb on - strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.539 kb on + strand, within DDA3937_RS00620 at 145.539 kb on + strand, within DDA3937_RS00620 at 145.539 kb on + strand, within DDA3937_RS00620 at 145.540 kb on - strand, within DDA3937_RS00620 at 145.564 kb on - strand, within DDA3937_RS00620 at 145.564 kb on - strand, within DDA3937_RS00620 at 145.734 kb on + strand at 145.780 kb on + strand, within DDA3937_RS00625 at 145.801 kb on + strand, within DDA3937_RS00625 at 145.801 kb on + strand, within DDA3937_RS00625 at 145.801 kb on + strand, within DDA3937_RS00625 at 145.801 kb on + strand, within DDA3937_RS00625 at 145.802 kb on - strand, within DDA3937_RS00625 at 145.802 kb on - strand, within DDA3937_RS00625 at 145.802 kb on - strand, within DDA3937_RS00625 at 145.914 kb on + strand, within DDA3937_RS00625 at 145.914 kb on + strand, within DDA3937_RS00625 at 145.915 kb on - strand, within DDA3937_RS00625 at 145.915 kb on - strand, within DDA3937_RS00625 at 145.966 kb on + strand, within DDA3937_RS00625 at 146.047 kb on + strand at 146.049 kb on + strand at 146.049 kb on + strand at 146.050 kb on - strand at 146.050 kb on - strand at 146.050 kb on - strand at 146.144 kb on - strand at 146.145 kb on + strand, within DDA3937_RS00630 at 146.145 kb on + strand, within DDA3937_RS00630 at 146.145 kb on + strand at 146.145 kb on + strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.248 kb on - strand at 146.499 kb on - strand, within DDA3937_RS00630 at 146.612 kb on + strand at 146.613 kb on - strand at 146.613 kb on - strand at 146.637 kb on + strand at 146.637 kb on + strand at 146.637 kb on + strand at 146.638 kb on - strand at 146.638 kb on - strand at 146.676 kb on + strand at 146.677 kb on - strand at 146.699 kb on + strand at 146.708 kb on + strand at 146.709 kb on - strand at 146.709 kb on - strand at 146.720 kb on + strand at 146.721 kb on - strand at 146.721 kb on - strand at 146.727 kb on - strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.763 kb on - strand at 146.763 kb on - strand at 146.763 kb on - strand at 146.763 kb on - strand at 146.763 kb on - strand at 146.774 kb on + strand at 146.775 kb on - strand at 146.775 kb on - strand at 146.775 kb on - strand at 146.775 kb on - strand at 146.775 kb on - strand at 146.857 kb on + strand at 146.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 144,794 + DDA3937_RS00615 0.57 -2.0 144,794 + DDA3937_RS00615 0.57 +0.7 144,795 - DDA3937_RS00615 0.57 -0.7 144,795 - DDA3937_RS00615 0.57 +0.7 144,795 - DDA3937_RS00615 0.57 +1.9 144,795 - DDA3937_RS00615 0.57 +0.6 144,795 - DDA3937_RS00615 0.57 +1.1 144,796 + DDA3937_RS00615 0.57 -1.4 144,797 - DDA3937_RS00615 0.57 -1.9 144,797 - DDA3937_RS00615 0.57 -4.0 144,797 - DDA3937_RS00615 0.57 -2.3 144,797 - DDA3937_RS00615 0.57 +0.1 144,797 - DDA3937_RS00615 0.57 +0.0 144,818 - DDA3937_RS00615 0.61 +0.6 144,818 - DDA3937_RS00615 0.61 -1.2 144,960 + +3.1 144,960 + DDA3937_RS00615 0.83 +1.8 144,961 - DDA3937_RS00615 0.83 -1.0 144,974 + DDA3937_RS00615 0.86 +1.0 144,974 + DDA3937_RS00615 0.86 +3.0 144,974 + +0.6 144,975 - DDA3937_RS00615 0.86 -2.2 144,975 - DDA3937_RS00615 0.86 -1.3 145,006 + -0.2 145,007 - -0.0 145,021 + -2.9 145,021 + -1.6 145,021 + -1.9 145,021 + +0.9 145,021 + -0.9 145,021 + -3.4 145,021 + +0.4 145,022 - -0.9 145,022 - -2.2 145,022 - +1.1 145,022 - -1.2 145,064 + -1.0 145,064 + +0.1 145,064 + +0.5 145,064 + -1.6 145,064 + -3.5 145,064 + +0.6 145,064 + -0.1 145,064 + +0.5 145,064 + -1.7 145,064 + +0.5 145,064 + -0.7 145,064 + +0.3 145,064 + +2.0 145,064 + +1.2 145,065 - +0.1 145,065 - +0.6 145,065 - +1.1 145,065 - +0.8 145,065 - -2.9 145,065 - +1.4 145,065 - -1.0 145,065 - +0.0 145,065 - -0.2 145,065 - -1.4 145,065 - -0.7 145,065 - -4.7 145,065 - +1.5 145,065 - -2.9 145,065 - -2.6 145,076 - -1.6 145,132 - -3.5 145,139 + -2.3 145,140 - -0.1 145,171 + -0.7 145,171 + -1.9 145,171 + -3.7 145,171 + -0.4 145,171 + -0.1 145,171 + -0.9 145,172 - +2.1 145,172 - -0.9 145,172 - -2.5 145,172 - -2.5 145,172 - -0.7 145,175 + +1.8 145,175 + +0.0 145,175 + +2.4 145,175 + +0.0 145,175 + -0.9 145,175 + -1.2 145,175 + -1.0 145,175 + -2.9 145,175 + -1.4 145,176 - -0.9 145,176 - +0.1 145,176 - -1.7 145,176 - +0.6 145,177 + +0.1 145,177 + -0.0 145,178 - -1.4 145,266 + +0.5 145,266 + +0.1 145,266 + -0.4 145,266 + +1.6 145,266 + -3.3 145,266 + -0.1 145,267 - -2.5 145,267 - +0.1 145,267 - -0.8 145,267 - -2.0 145,267 - -0.3 145,267 - -1.6 145,267 - +0.0 145,295 + +2.2 145,302 - -1.0 145,333 + -3.0 145,333 + -1.0 145,333 + -2.5 145,334 - +1.0 145,353 - -1.9 145,383 + DDA3937_RS00620 0.14 +0.9 145,390 + DDA3937_RS00620 0.17 -1.8 145,391 - DDA3937_RS00620 0.17 -1.7 145,391 - DDA3937_RS00620 0.17 -0.7 145,391 - DDA3937_RS00620 0.17 -0.5 145,391 - -0.4 145,399 + DDA3937_RS00620 0.19 +1.7 145,399 + DDA3937_RS00620 0.19 +1.3 145,399 + DDA3937_RS00620 0.19 -1.7 145,399 + DDA3937_RS00620 0.19 -3.0 145,399 + DDA3937_RS00620 0.19 +2.4 145,399 + DDA3937_RS00620 0.19 +0.6 145,399 + DDA3937_RS00620 0.19 -2.2 145,399 + DDA3937_RS00620 0.19 -2.3 145,399 + DDA3937_RS00620 0.19 -1.4 145,400 - DDA3937_RS00620 0.20 +1.5 145,400 - DDA3937_RS00620 0.20 -1.0 145,400 - DDA3937_RS00620 0.20 -1.2 145,400 - DDA3937_RS00620 0.20 +0.3 145,400 - DDA3937_RS00620 0.20 -1.5 145,400 - DDA3937_RS00620 0.20 -1.9 145,478 + DDA3937_RS00620 0.43 +2.6 145,479 - DDA3937_RS00620 0.44 +1.0 145,537 + DDA3937_RS00620 0.61 -0.6 145,537 + DDA3937_RS00620 0.61 -0.7 145,537 + DDA3937_RS00620 0.61 -1.0 145,537 + DDA3937_RS00620 0.61 +0.3 145,537 + DDA3937_RS00620 0.61 +0.9 145,537 + DDA3937_RS00620 0.61 -0.6 145,537 + DDA3937_RS00620 0.61 -2.2 145,538 - DDA3937_RS00620 0.62 -2.9 145,538 - DDA3937_RS00620 0.62 -0.5 145,538 - DDA3937_RS00620 0.62 -1.2 145,538 - DDA3937_RS00620 0.62 -2.3 145,538 - DDA3937_RS00620 0.62 -1.2 145,538 - DDA3937_RS00620 0.62 -3.9 145,539 + DDA3937_RS00620 0.62 -1.6 145,539 + DDA3937_RS00620 0.62 -1.4 145,539 + DDA3937_RS00620 0.62 -1.5 145,540 - DDA3937_RS00620 0.62 +0.8 145,564 - DDA3937_RS00620 0.70 -1.0 145,564 - DDA3937_RS00620 0.70 +0.7 145,734 + -3.1 145,780 + DDA3937_RS00625 0.20 -1.9 145,801 + DDA3937_RS00625 0.28 -1.4 145,801 + DDA3937_RS00625 0.28 -3.4 145,801 + DDA3937_RS00625 0.28 -2.3 145,801 + DDA3937_RS00625 0.28 -2.1 145,802 - DDA3937_RS00625 0.28 -0.7 145,802 - DDA3937_RS00625 0.28 -1.2 145,802 - DDA3937_RS00625 0.28 -1.9 145,914 + DDA3937_RS00625 0.68 -2.4 145,914 + DDA3937_RS00625 0.68 -1.0 145,915 - DDA3937_RS00625 0.68 +0.2 145,915 - DDA3937_RS00625 0.68 -2.1 145,966 + DDA3937_RS00625 0.86 +0.5 146,047 + -0.4 146,049 + -2.0 146,049 + -1.2 146,050 - -2.8 146,050 - -0.6 146,050 - -1.2 146,144 - +0.6 146,145 + DDA3937_RS00630 0.24 -1.0 146,145 + DDA3937_RS00630 0.24 -1.9 146,145 + -0.7 146,145 + DDA3937_RS00630 0.24 +3.8 146,146 - DDA3937_RS00630 0.24 -1.1 146,146 - DDA3937_RS00630 0.24 -0.4 146,146 - DDA3937_RS00630 0.24 +0.0 146,146 - DDA3937_RS00630 0.24 +0.8 146,146 - DDA3937_RS00630 0.24 +0.4 146,248 - -0.4 146,499 - DDA3937_RS00630 0.81 +0.6 146,612 + -2.2 146,613 - -0.0 146,613 - -4.6 146,637 + +0.6 146,637 + -1.2 146,637 + +0.6 146,638 - +1.3 146,638 - -2.0 146,676 + -0.9 146,677 - +0.8 146,699 + -0.2 146,708 + -0.7 146,709 - -0.2 146,709 - -2.5 146,720 + +3.0 146,721 - +0.9 146,721 - -0.8 146,727 - -3.2 146,762 + +0.2 146,762 + +1.4 146,762 + -2.0 146,762 + -1.9 146,762 + -1.1 146,762 + +0.9 146,762 + -3.2 146,762 + -2.5 146,763 - +1.8 146,763 - +0.2 146,763 - -3.4 146,763 - -1.9 146,763 - -1.6 146,774 + +0.2 146,775 - -1.1 146,775 - -0.2 146,775 - -1.6 146,775 - +3.2 146,775 - -0.5 146,857 + -0.4 146,888 + -0.1
Or see this region's nucleotide sequence