Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00540 and DDA3937_RS00545 are separated by 2 nucleotides DDA3937_RS00545 and DDA3937_RS00550 are separated by 12 nucleotides DDA3937_RS00550 and DDA3937_RS00555 are separated by 400 nucleotides
DDA3937_RS00540: DDA3937_RS00540 - cellulose biosynthesis protein BcsC, at 126,690 to 130,586
_RS00540
DDA3937_RS00545: DDA3937_RS00545 - cellulose synthase, at 130,589 to 131,056
_RS00545
DDA3937_RS00550: DDA3937_RS00550 - endoglucanase, at 131,069 to 132,067
_RS00550
DDA3937_RS00555: DDA3937_RS00555 - dicarboxylate/amino acid:cation symporter, at 132,468 to 133,754
_RS00555
Position (kb) 131
132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 130.083 kb on - strand, within DDA3937_RS00540 at 130.110 kb on + strand, within DDA3937_RS00540 at 130.110 kb on + strand, within DDA3937_RS00540 at 130.110 kb on + strand, within DDA3937_RS00540 at 130.111 kb on - strand, within DDA3937_RS00540 at 130.111 kb on - strand, within DDA3937_RS00540 at 130.111 kb on - strand, within DDA3937_RS00540 at 130.111 kb on - strand, within DDA3937_RS00540 at 130.113 kb on - strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.195 kb on - strand, within DDA3937_RS00540 at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.198 kb on - strand at 130.198 kb on - strand at 130.198 kb on - strand at 130.198 kb on - strand at 130.203 kb on + strand at 130.203 kb on + strand at 130.204 kb on - strand at 130.218 kb on + strand at 130.236 kb on + strand at 130.236 kb on + strand at 130.236 kb on + strand at 130.237 kb on - strand at 130.237 kb on - strand at 130.237 kb on - strand at 130.276 kb on - strand at 130.323 kb on + strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.345 kb on - strand at 130.433 kb on + strand at 130.434 kb on - strand at 130.434 kb on - strand at 130.449 kb on + strand at 130.449 kb on + strand at 130.449 kb on + strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.451 kb on + strand at 130.515 kb on + strand at 130.516 kb on - strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.534 kb on - strand at 130.534 kb on - strand at 130.557 kb on + strand at 130.558 kb on - strand at 130.558 kb on - strand at 130.584 kb on + strand at 130.584 kb on + strand at 130.584 kb on + strand at 130.584 kb on + strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.619 kb on + strand at 130.619 kb on + strand at 130.619 kb on + strand at 130.619 kb on + strand at 130.619 kb on + strand at 130.620 kb on - strand at 130.620 kb on - strand at 130.620 kb on - strand at 130.620 kb on - strand at 130.731 kb on + strand, within DDA3937_RS00545 at 130.731 kb on + strand, within DDA3937_RS00545 at 130.731 kb on + strand, within DDA3937_RS00545 at 130.731 kb on + strand, within DDA3937_RS00545 at 130.732 kb on - strand, within DDA3937_RS00545 at 130.732 kb on - strand, within DDA3937_RS00545 at 130.732 kb on - strand, within DDA3937_RS00545 at 130.801 kb on + strand, within DDA3937_RS00545 at 130.871 kb on + strand, within DDA3937_RS00545 at 130.871 kb on + strand, within DDA3937_RS00545 at 130.872 kb on - strand, within DDA3937_RS00545 at 130.872 kb on - strand, within DDA3937_RS00545 at 130.955 kb on + strand, within DDA3937_RS00545 at 130.955 kb on + strand, within DDA3937_RS00545 at 130.956 kb on - strand, within DDA3937_RS00545 at 131.067 kb on + strand at 131.068 kb on - strand at 131.068 kb on - strand at 131.157 kb on - strand at 131.159 kb on - strand at 131.206 kb on + strand, within DDA3937_RS00550 at 131.207 kb on - strand, within DDA3937_RS00550 at 131.261 kb on + strand, within DDA3937_RS00550 at 131.261 kb on + strand, within DDA3937_RS00550 at 131.262 kb on - strand, within DDA3937_RS00550 at 131.262 kb on - strand at 131.339 kb on + strand, within DDA3937_RS00550 at 131.339 kb on + strand, within DDA3937_RS00550 at 131.339 kb on + strand, within DDA3937_RS00550 at 131.380 kb on + strand, within DDA3937_RS00550 at 131.380 kb on + strand, within DDA3937_RS00550 at 131.440 kb on + strand, within DDA3937_RS00550 at 131.440 kb on + strand, within DDA3937_RS00550 at 131.440 kb on + strand, within DDA3937_RS00550 at 131.440 kb on + strand, within DDA3937_RS00550 at 131.460 kb on - strand, within DDA3937_RS00550 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.592 kb on - strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.808 kb on - strand, within DDA3937_RS00550 at 131.813 kb on + strand, within DDA3937_RS00550 at 131.813 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.858 kb on + strand, within DDA3937_RS00550 at 131.858 kb on + strand, within DDA3937_RS00550 at 131.859 kb on - strand, within DDA3937_RS00550 at 131.866 kb on + strand, within DDA3937_RS00550 at 131.866 kb on + strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.870 kb on + strand, within DDA3937_RS00550 at 131.871 kb on - strand, within DDA3937_RS00550 at 131.914 kb on + strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.927 kb on + strand, within DDA3937_RS00550 at 131.927 kb on + strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.933 kb on - strand, within DDA3937_RS00550 at 132.017 kb on + strand at 132.017 kb on + strand at 132.018 kb on - strand at 132.020 kb on + strand at 132.061 kb on + strand at 132.066 kb on - strand at 132.071 kb on + strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.082 kb on + strand at 132.083 kb on - strand at 132.125 kb on - strand at 132.170 kb on + strand at 132.284 kb on - strand at 132.354 kb on - strand at 132.354 kb on - strand at 132.359 kb on + strand at 132.361 kb on + strand at 132.361 kb on + strand at 132.368 kb on - strand at 132.379 kb on + strand at 132.468 kb on - strand at 132.518 kb on + strand at 132.598 kb on + strand, within DDA3937_RS00555 at 132.599 kb on - strand, within DDA3937_RS00555 at 132.632 kb on + strand, within DDA3937_RS00555 at 132.633 kb on - strand, within DDA3937_RS00555 at 132.665 kb on + strand, within DDA3937_RS00555 at 132.723 kb on - strand, within DDA3937_RS00555 at 132.723 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.884 kb on + strand, within DDA3937_RS00555 at 132.885 kb on - strand, within DDA3937_RS00555
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 130,083 - DDA3937_RS00540 0.87 +0.5 130,110 + DDA3937_RS00540 0.88 -2.4 130,110 + DDA3937_RS00540 0.88 -0.4 130,110 + DDA3937_RS00540 0.88 +1.5 130,111 - DDA3937_RS00540 0.88 +0.8 130,111 - DDA3937_RS00540 0.88 -2.5 130,111 - DDA3937_RS00540 0.88 -0.3 130,111 - DDA3937_RS00540 0.88 -2.6 130,113 - DDA3937_RS00540 0.88 +2.0 130,194 + DDA3937_RS00540 0.90 -0.2 130,194 + DDA3937_RS00540 0.90 -2.6 130,194 + DDA3937_RS00540 0.90 +0.3 130,194 + DDA3937_RS00540 0.90 -0.6 130,194 + DDA3937_RS00540 0.90 -3.2 130,194 + DDA3937_RS00540 0.90 +0.6 130,195 - DDA3937_RS00540 0.90 +2.6 130,197 + +0.4 130,197 + -1.9 130,197 + -1.7 130,197 + -0.8 130,197 + +0.1 130,197 + -1.6 130,197 + +0.9 130,198 - -0.4 130,198 - -0.4 130,198 - +0.5 130,198 - -0.3 130,203 + +0.4 130,203 + -0.2 130,204 - -1.3 130,218 + +1.1 130,236 + -1.7 130,236 + +0.9 130,236 + +1.6 130,237 - +0.3 130,237 - +0.6 130,237 - -1.9 130,276 - +0.3 130,323 + +0.2 130,324 - -1.8 130,324 - -0.3 130,345 - -3.3 130,433 + -2.6 130,434 - -0.9 130,434 - +1.3 130,449 + +0.6 130,449 + +0.6 130,449 + -1.0 130,450 - -1.3 130,450 - +1.0 130,451 + -1.4 130,515 + +0.6 130,516 - -0.7 130,533 + +0.2 130,533 + -0.9 130,533 + +2.7 130,533 + -1.9 130,533 + -2.2 130,533 + -1.0 130,534 - -1.1 130,534 - -1.4 130,557 + +1.0 130,558 - +2.3 130,558 - -0.1 130,584 + -1.6 130,584 + +1.4 130,584 + -0.3 130,584 + +1.4 130,585 - -1.9 130,585 - -1.6 130,585 - -0.6 130,585 - +3.1 130,585 - -2.4 130,585 - +1.2 130,585 - -0.5 130,585 - -2.3 130,619 + -0.4 130,619 + +0.9 130,619 + +0.4 130,619 + +0.7 130,619 + +0.4 130,620 - +0.6 130,620 - -2.9 130,620 - -1.8 130,620 - -2.3 130,731 + DDA3937_RS00545 0.30 -1.1 130,731 + DDA3937_RS00545 0.30 +1.0 130,731 + DDA3937_RS00545 0.30 -0.1 130,731 + DDA3937_RS00545 0.30 -0.2 130,732 - DDA3937_RS00545 0.31 -2.1 130,732 - DDA3937_RS00545 0.31 +0.2 130,732 - DDA3937_RS00545 0.31 -2.3 130,801 + DDA3937_RS00545 0.45 +1.2 130,871 + DDA3937_RS00545 0.60 +0.8 130,871 + DDA3937_RS00545 0.60 -0.7 130,872 - DDA3937_RS00545 0.60 -0.4 130,872 - DDA3937_RS00545 0.60 -1.6 130,955 + DDA3937_RS00545 0.78 -0.2 130,955 + DDA3937_RS00545 0.78 +0.2 130,956 - DDA3937_RS00545 0.78 +0.7 131,067 + +1.1 131,068 - +0.3 131,068 - +0.3 131,157 - +2.4 131,159 - -0.4 131,206 + DDA3937_RS00550 0.14 -0.3 131,207 - DDA3937_RS00550 0.14 -1.2 131,261 + DDA3937_RS00550 0.19 -1.4 131,261 + DDA3937_RS00550 0.19 -0.7 131,262 - DDA3937_RS00550 0.19 -1.2 131,262 - -0.4 131,339 + DDA3937_RS00550 0.27 -0.4 131,339 + DDA3937_RS00550 0.27 +2.3 131,339 + DDA3937_RS00550 0.27 -0.7 131,380 + DDA3937_RS00550 0.31 +1.9 131,380 + DDA3937_RS00550 0.31 +0.7 131,440 + DDA3937_RS00550 0.37 +0.1 131,440 + DDA3937_RS00550 0.37 -0.3 131,440 + DDA3937_RS00550 0.37 -1.0 131,440 + DDA3937_RS00550 0.37 -1.0 131,460 - DDA3937_RS00550 0.39 +0.1 131,506 + DDA3937_RS00550 0.44 +2.3 131,506 + DDA3937_RS00550 0.44 -0.7 131,506 + DDA3937_RS00550 0.44 +0.2 131,507 - DDA3937_RS00550 0.44 +1.2 131,507 - DDA3937_RS00550 0.44 -0.7 131,507 - DDA3937_RS00550 0.44 -1.9 131,570 + DDA3937_RS00550 0.50 -2.0 131,570 + DDA3937_RS00550 0.50 -1.2 131,570 + DDA3937_RS00550 0.50 +0.0 131,570 + DDA3937_RS00550 0.50 -1.2 131,570 + DDA3937_RS00550 0.50 +1.3 131,570 + DDA3937_RS00550 0.50 +1.3 131,570 + DDA3937_RS00550 0.50 -2.7 131,570 + DDA3937_RS00550 0.50 -2.4 131,570 + DDA3937_RS00550 0.50 +0.7 131,570 + DDA3937_RS00550 0.50 +2.9 131,570 + DDA3937_RS00550 0.50 -3.7 131,570 + -1.0 131,571 - DDA3937_RS00550 0.50 +1.5 131,571 - DDA3937_RS00550 0.50 -0.7 131,571 - DDA3937_RS00550 0.50 +1.0 131,571 - DDA3937_RS00550 0.50 +0.8 131,571 - DDA3937_RS00550 0.50 +0.4 131,571 - DDA3937_RS00550 0.50 +1.1 131,571 - DDA3937_RS00550 0.50 -2.7 131,571 - DDA3937_RS00550 0.50 -1.6 131,571 - DDA3937_RS00550 0.50 -0.0 131,571 - DDA3937_RS00550 0.50 -2.3 131,592 - DDA3937_RS00550 0.52 -1.7 131,807 + DDA3937_RS00550 0.74 -0.7 131,807 + DDA3937_RS00550 0.74 -2.3 131,807 + DDA3937_RS00550 0.74 +1.4 131,808 - DDA3937_RS00550 0.74 +0.8 131,813 + DDA3937_RS00550 0.74 -2.2 131,813 + DDA3937_RS00550 0.74 -1.6 131,819 + DDA3937_RS00550 0.75 -0.2 131,819 + DDA3937_RS00550 0.75 -2.2 131,819 + DDA3937_RS00550 0.75 +0.1 131,858 + DDA3937_RS00550 0.79 -0.9 131,858 + DDA3937_RS00550 0.79 +1.1 131,859 - DDA3937_RS00550 0.79 +3.6 131,866 + DDA3937_RS00550 0.80 -0.0 131,866 + DDA3937_RS00550 0.80 -3.3 131,867 - DDA3937_RS00550 0.80 -1.5 131,867 - DDA3937_RS00550 0.80 +1.0 131,867 - DDA3937_RS00550 0.80 +1.9 131,867 - DDA3937_RS00550 0.80 -1.4 131,870 + DDA3937_RS00550 0.80 +0.9 131,871 - DDA3937_RS00550 0.80 -1.4 131,914 + DDA3937_RS00550 0.85 -0.9 131,915 - DDA3937_RS00550 0.85 -2.3 131,915 - DDA3937_RS00550 0.85 -0.2 131,915 - DDA3937_RS00550 0.85 +2.6 131,927 + DDA3937_RS00550 0.86 -0.1 131,927 + DDA3937_RS00550 0.86 +0.4 131,928 - DDA3937_RS00550 0.86 -0.0 131,928 - DDA3937_RS00550 0.86 -0.4 131,928 - DDA3937_RS00550 0.86 -2.7 131,928 - DDA3937_RS00550 0.86 +1.7 131,932 + DDA3937_RS00550 0.86 +0.2 131,932 + DDA3937_RS00550 0.86 +0.6 131,932 + DDA3937_RS00550 0.86 -0.2 131,933 - DDA3937_RS00550 0.86 -1.3 132,017 + -0.2 132,017 + -4.3 132,018 - -1.8 132,020 + -1.5 132,061 + +1.9 132,066 - +0.5 132,071 + -2.8 132,072 - +0.4 132,072 - -2.2 132,072 - -2.9 132,072 - -2.4 132,082 + +1.5 132,083 - +0.1 132,125 - +1.1 132,170 + -1.3 132,284 - -0.5 132,354 - -1.1 132,354 - +1.8 132,359 + -1.6 132,361 + +1.3 132,361 + -3.5 132,368 - +0.2 132,379 + -0.8 132,468 - -2.1 132,518 + +0.2 132,598 + DDA3937_RS00555 0.10 -2.4 132,599 - DDA3937_RS00555 0.10 +1.7 132,632 + DDA3937_RS00555 0.13 -2.5 132,633 - DDA3937_RS00555 0.13 +2.2 132,665 + DDA3937_RS00555 0.15 -1.9 132,723 - DDA3937_RS00555 0.20 +1.4 132,723 - DDA3937_RS00555 0.20 -2.1 132,826 - DDA3937_RS00555 0.28 -3.8 132,826 - DDA3937_RS00555 0.28 -1.7 132,826 - DDA3937_RS00555 0.28 -1.2 132,884 + DDA3937_RS00555 0.32 -2.7 132,885 - DDA3937_RS00555 0.32 -0.9
Or see this region's nucleotide sequence