Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00490

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
114,565	+		DDA3937_RS00480	0.70	-1.4
114,565	+		DDA3937_RS00480	0.70	+1.2
114,565	+		DDA3937_RS00480	0.70	-0.7
114,565	+		DDA3937_RS00480	0.70	-2.1
114,565	+		DDA3937_RS00480	0.70	-2.6
114,565	+		DDA3937_RS00480	0.70	-1.9
114,566	-		DDA3937_RS00480	0.70	-1.8
114,566	-		DDA3937_RS00480	0.70	-1.4
114,566	-		DDA3937_RS00480	0.70	+0.7
114,628	+		DDA3937_RS00480	0.76	-1.9
114,629	-		DDA3937_RS00480	0.77	-3.1
114,629	-		DDA3937_RS00480	0.77	+1.6
114,857	+				-2.1
114,857	+				+1.2
114,857	+				+0.6
114,858	-				+0.2
114,874	+				-0.6
114,874	+				-2.6
114,874	+				+1.4
114,874	+				-0.7
114,878	+				-0.4
114,878	+				+0.4
114,878	+				-2.1
114,878	+				-1.2
114,878	+				-1.2
114,878	+				-2.7
114,878	+				-0.4
114,879	-				-1.0
114,879	-				-1.9
114,879	-				-1.7
114,879	-				-2.3
114,933	+				+0.9
114,933	+				-1.6
114,966	+				+1.9
114,967	-				+2.0
114,972	-				-0.3
114,972	-				+0.3
115,040	+		DDA3937_RS00485	0.13	-1.9
115,040	+		DDA3937_RS00485	0.13	-1.0
115,040	+		DDA3937_RS00485	0.13	-3.0
115,040	+		DDA3937_RS00485	0.13	+0.1
115,040	+		DDA3937_RS00485	0.13	+0.1
115,040	+		DDA3937_RS00485	0.13	+0.3
115,040	+		DDA3937_RS00485	0.13	+1.5
115,040	+		DDA3937_RS00485	0.13	-1.0
115,040	+		DDA3937_RS00485	0.13	-2.2
115,040	+		DDA3937_RS00485	0.13	-2.7
115,040	+		DDA3937_RS00485	0.13	-1.0
115,041	-		DDA3937_RS00485	0.13	+0.6
115,041	-		DDA3937_RS00485	0.13	-3.7
115,041	-		DDA3937_RS00485	0.13	-1.6
115,041	-		DDA3937_RS00485	0.13	+0.7
115,041	-		DDA3937_RS00485	0.13	-2.2
115,084	-		DDA3937_RS00485	0.21	+0.8
115,085	+		DDA3937_RS00485	0.22	-3.9
115,085	+		DDA3937_RS00485	0.22	+0.0
115,085	+		DDA3937_RS00485	0.22	-0.4
115,085	+		DDA3937_RS00485	0.22	-0.9
115,085	+		DDA3937_RS00485	0.22	-2.5
115,085	+		DDA3937_RS00485	0.22	+0.1
115,085	+		DDA3937_RS00485	0.22	-1.4
115,085	+		DDA3937_RS00485	0.22	+0.0
115,086	-		DDA3937_RS00485	0.22	-0.9
115,086	-		DDA3937_RS00485	0.22	-3.4
115,086	-		DDA3937_RS00485	0.22	+1.1
115,086	-		DDA3937_RS00485	0.22	-0.3
115,086	-		DDA3937_RS00485	0.22	-0.1
115,086	-		DDA3937_RS00485	0.22	-0.8
115,086	-		DDA3937_RS00485	0.22	-2.1
115,086	-		DDA3937_RS00485	0.22	+0.5
115,086	-		DDA3937_RS00485	0.22	-0.4
115,086	-		DDA3937_RS00485	0.22	+1.5
115,129	+		DDA3937_RS00485	0.30	+0.1
115,129	+		DDA3937_RS00485	0.30	+0.8
115,129	+		DDA3937_RS00485	0.30	-1.9
115,129	+		DDA3937_RS00485	0.30	-1.3
115,129	+		DDA3937_RS00485	0.30	+1.7
115,129	+		DDA3937_RS00485	0.30	-0.1
115,129	+		DDA3937_RS00485	0.30	-4.4
115,129	+		DDA3937_RS00485	0.30	+0.6
115,129	+		DDA3937_RS00485	0.30	-3.0
115,129	+		DDA3937_RS00485	0.30	-2.2
115,130	-		DDA3937_RS00485	0.30	+0.2
115,130	-		DDA3937_RS00485	0.30	+3.2
115,130	-		DDA3937_RS00485	0.30	-1.3
115,130	-		DDA3937_RS00485	0.30	-3.1
115,130	-		DDA3937_RS00485	0.30	-0.9
115,130	-		DDA3937_RS00485	0.30	+1.8
115,134	+		DDA3937_RS00485	0.31	-0.4
115,207	-		DDA3937_RS00485	0.44	-3.5
115,238	+		DDA3937_RS00485	0.50	-1.7
115,238	+		DDA3937_RS00485	0.50	+0.0
115,238	+		DDA3937_RS00485	0.50	-1.7
115,238	+		DDA3937_RS00485	0.50	-0.4
115,238	+		DDA3937_RS00485	0.50	-0.6
115,238	+		DDA3937_RS00485	0.50	-1.7
115,239	-		DDA3937_RS00485	0.50	-1.5
115,239	-		DDA3937_RS00485	0.50	-0.4
115,239	-		DDA3937_RS00485	0.50	-0.3
115,239	-		DDA3937_RS00485	0.50	-3.0
115,260	+		DDA3937_RS00485	0.54	-1.9
115,261	-		DDA3937_RS00485	0.54	-0.4
115,279	-		DDA3937_RS00485	0.58	-0.3
115,310	+		DDA3937_RS00485	0.64	-3.1
115,310	+		DDA3937_RS00485	0.64	+1.4
115,310	+		DDA3937_RS00485	0.64	-3.4
115,310	+		DDA3937_RS00485	0.64	-3.1
115,311	-		DDA3937_RS00485	0.64	+0.6
115,311	-		DDA3937_RS00485	0.64	+0.5
115,311	-		DDA3937_RS00485	0.64	-0.9
115,311	-		DDA3937_RS00485	0.64	+0.8
115,352	+		DDA3937_RS00485	0.72	+2.3
115,352	+		DDA3937_RS00485	0.72	-0.6
115,353	-		DDA3937_RS00485	0.72	+0.2
115,353	-		DDA3937_RS00485	0.72	+1.3
115,416	+		DDA3937_RS00485	0.84	+0.9
115,457	+				-0.9
115,457	+				+1.1
115,458	-				-1.6
115,458	-				+0.4
115,458	-				-2.3
115,493	-				+0.9
115,515	+				+0.9
115,515	+				-0.3
115,515	+				+1.0
115,515	+				-0.1
115,516	-				+2.0
115,516	-				+0.0
115,518	-				+2.0
115,529	-				-3.8
115,529	-				-2.1
115,538	-				-0.6
115,628	+		DDA3937_RS00490	0.29	+0.9
115,628	+		DDA3937_RS00490	0.29	-1.5
115,628	+		DDA3937_RS00490	0.29	+0.3
115,629	-		DDA3937_RS00490	0.29	+2.0
115,629	-		DDA3937_RS00490	0.29	+0.5
115,674	+		DDA3937_RS00490	0.49	+0.6
115,674	+		DDA3937_RS00490	0.49	+0.3
115,716	-		DDA3937_RS00490	0.68	+1.5
115,751	+		DDA3937_RS00490	0.83	+0.6
115,751	+		DDA3937_RS00490	0.83	-0.0
115,752	-		DDA3937_RS00490	0.83	+1.7
115,757	-		DDA3937_RS00490	0.86	-1.0
115,757	-		DDA3937_RS00490	0.86	-1.8
115,789	+				-2.1
115,789	+				-0.3
115,789	+				-1.7
115,789	+				+0.7
115,790	-				-0.4
115,790	-				-2.9
115,790	-				+0.0
115,790	-				-1.0
115,790	-				-4.5
115,790	-				-0.1
115,815	+				+0.8
115,815	+				+1.8
115,815	+				-1.0
115,816	-				-1.6
115,827	+				+0.4
115,827	+				+0.0
115,827	+				+0.8
115,827	+				-0.8
115,828	-				-0.1
115,828	-				+2.8
115,828	-				-1.6
115,879	-				-1.2
115,887	+				+1.0
115,888	-				+1.3
115,888	-				-1.6
115,907	+				-0.8
115,907	+				-0.0
115,908	-				-0.4
115,944	+		DDA3937_RS00495	0.14	-1.0
115,997	+		DDA3937_RS00495	0.33	+1.0
115,997	+		DDA3937_RS00495	0.33	+0.0
115,997	+		DDA3937_RS00495	0.33	-0.8
115,997	+		DDA3937_RS00495	0.33	+0.3
115,997	+		DDA3937_RS00495	0.33	-0.0
115,997	+		DDA3937_RS00495	0.33	+2.4
115,997	+		DDA3937_RS00495	0.33	-2.3
115,997	+		DDA3937_RS00495	0.33	-0.6
115,997	+				+2.6
115,998	-		DDA3937_RS00495	0.34	-0.0
116,028	+		DDA3937_RS00495	0.45	+0.5
116,028	+		DDA3937_RS00495	0.45	-0.4
116,029	-		DDA3937_RS00495	0.45	+0.6
116,029	-		DDA3937_RS00495	0.45	-2.6
116,035	-		DDA3937_RS00495	0.47	-3.4
116,035	-		DDA3937_RS00495	0.47	-0.1
116,035	-		DDA3937_RS00495	0.47	-2.0
116,156	+				-1.4
116,167	+				-3.4
116,167	+				-2.0
116,167	+				-1.2
116,178	+				-0.6
116,178	+				-2.4
116,178	+				-0.0
116,178	+				+2.3
116,178	+				-0.6
116,178	+				+1.0
116,202	-				+0.5
116,211	+				+0.1
116,211	+				-2.8
116,211	+				-1.8
116,212	-				-3.1
116,212	-				-1.2
116,212	-				-1.4
116,224	-				-1.2
116,243	-				-1.4
116,249	+				-1.2
116,249	+				+1.3
116,254	+				+1.0
116,254	+				-2.5
116,254	+				+1.1
116,254	+				+1.2
116,255	-				+0.7
116,255	-				-1.6
116,257	+				+4.2
116,257	+				+0.1
116,264	+				+1.3
116,264	+				+0.0
116,265	-				-2.4
116,265	-				-0.1
116,265	-				-0.3
116,265	-				-0.7
116,265	-				+0.5
116,277	+				+2.2
116,277	+				+0.0
116,341	+				+0.1
116,351	+				-2.2
116,351	+				-0.7
116,352	-				-2.0
116,422	+		DDA3937_RS00500	0.10	+2.1
116,422	+		DDA3937_RS00500	0.10	+0.9
116,423	-		DDA3937_RS00500	0.10	+1.2
116,559	+		DDA3937_RS00500	0.20	+1.0
116,559	+		DDA3937_RS00500	0.20	-1.1
116,560	-		DDA3937_RS00500	0.20	-1.2
116,560	-		DDA3937_RS00500	0.20	+1.9
116,651	+		DDA3937_RS00500	0.26	-1.2
116,652	-		DDA3937_RS00500	0.26	+1.1