Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00475 and DDA3937_RS00480 overlap by 4 nucleotides DDA3937_RS00480 and DDA3937_RS00485 are separated by 105 nucleotides DDA3937_RS00485 and DDA3937_RS00490 are separated by 58 nucleotides
DDA3937_RS00475: DDA3937_RS00475 - dipeptide ABC transporter ATP-binding protein, at 112,880 to 113,860
_RS00475
DDA3937_RS00480: DDA3937_RS00480 - ABC transporter ATP-binding protein, at 113,857 to 114,864
_RS00480
DDA3937_RS00485: DDA3937_RS00485 - hypothetical protein, at 114,970 to 115,503
_RS00485
DDA3937_RS00490: DDA3937_RS00490 - hypothetical protein, at 115,562 to 115,789
_RS00490
Position (kb) 113
114
115 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 112.865 kb on + strand at 112.865 kb on + strand at 112.865 kb on + strand at 112.865 kb on + strand at 112.866 kb on - strand at 112.867 kb on + strand at 112.867 kb on + strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.873 kb on + strand at 112.874 kb on - strand at 112.896 kb on + strand at 112.897 kb on - strand at 112.954 kb on + strand at 112.962 kb on - strand at 112.962 kb on - strand at 113.195 kb on + strand, within DDA3937_RS00475 at 113.196 kb on - strand, within DDA3937_RS00475 at 113.215 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.711 kb on + strand, within DDA3937_RS00475 at 113.712 kb on - strand, within DDA3937_RS00475 at 113.824 kb on + strand at 113.825 kb on - strand at 113.825 kb on - strand at 113.856 kb on + strand at 113.857 kb on - strand at 113.857 kb on - strand at 113.890 kb on + strand at 113.964 kb on - strand, within DDA3937_RS00480 at 113.964 kb on - strand, within DDA3937_RS00480 at 114.045 kb on + strand, within DDA3937_RS00480 at 114.045 kb on + strand, within DDA3937_RS00480 at 114.046 kb on - strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.100 kb on + strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.196 kb on - strand, within DDA3937_RS00480 at 114.196 kb on - strand at 114.322 kb on + strand, within DDA3937_RS00480 at 114.322 kb on + strand, within DDA3937_RS00480 at 114.323 kb on - strand, within DDA3937_RS00480 at 114.323 kb on - strand, within DDA3937_RS00480 at 114.366 kb on + strand, within DDA3937_RS00480 at 114.503 kb on - strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.628 kb on + strand, within DDA3937_RS00480 at 114.629 kb on - strand, within DDA3937_RS00480 at 114.629 kb on - strand, within DDA3937_RS00480 at 114.857 kb on + strand at 114.857 kb on + strand at 114.857 kb on + strand at 114.858 kb on - strand at 114.874 kb on + strand at 114.874 kb on + strand at 114.874 kb on + strand at 114.874 kb on + strand at 114.878 kb on + strand at 114.878 kb on + strand at 114.878 kb on + strand at 114.878 kb on + strand at 114.878 kb on + strand at 114.878 kb on + strand at 114.878 kb on + strand at 114.879 kb on - strand at 114.879 kb on - strand at 114.879 kb on - strand at 114.879 kb on - strand at 114.933 kb on + strand at 114.933 kb on + strand at 114.966 kb on + strand at 114.967 kb on - strand at 114.972 kb on - strand at 114.972 kb on - strand at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.040 kb on + strand, within DDA3937_RS00485 at 115.041 kb on - strand, within DDA3937_RS00485 at 115.041 kb on - strand, within DDA3937_RS00485 at 115.041 kb on - strand, within DDA3937_RS00485 at 115.041 kb on - strand, within DDA3937_RS00485 at 115.041 kb on - strand, within DDA3937_RS00485 at 115.084 kb on - strand, within DDA3937_RS00485 at 115.085 kb on + strand, within DDA3937_RS00485 at 115.085 kb on + strand, within DDA3937_RS00485 at 115.085 kb on + strand, within DDA3937_RS00485 at 115.085 kb on + strand, within DDA3937_RS00485 at 115.085 kb on + strand, within DDA3937_RS00485 at 115.085 kb on + strand, within DDA3937_RS00485 at 115.085 kb on + strand, within DDA3937_RS00485 at 115.085 kb on + strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.086 kb on - strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.129 kb on + strand, within DDA3937_RS00485 at 115.130 kb on - strand, within DDA3937_RS00485 at 115.130 kb on - strand, within DDA3937_RS00485 at 115.130 kb on - strand, within DDA3937_RS00485 at 115.130 kb on - strand, within DDA3937_RS00485 at 115.130 kb on - strand, within DDA3937_RS00485 at 115.130 kb on - strand, within DDA3937_RS00485 at 115.134 kb on + strand, within DDA3937_RS00485 at 115.207 kb on - strand, within DDA3937_RS00485 at 115.238 kb on + strand, within DDA3937_RS00485 at 115.238 kb on + strand, within DDA3937_RS00485 at 115.238 kb on + strand, within DDA3937_RS00485 at 115.238 kb on + strand, within DDA3937_RS00485 at 115.238 kb on + strand, within DDA3937_RS00485 at 115.238 kb on + strand, within DDA3937_RS00485 at 115.239 kb on - strand, within DDA3937_RS00485 at 115.239 kb on - strand, within DDA3937_RS00485 at 115.239 kb on - strand, within DDA3937_RS00485 at 115.239 kb on - strand, within DDA3937_RS00485 at 115.260 kb on + strand, within DDA3937_RS00485 at 115.261 kb on - strand, within DDA3937_RS00485 at 115.279 kb on - strand, within DDA3937_RS00485 at 115.310 kb on + strand, within DDA3937_RS00485 at 115.310 kb on + strand, within DDA3937_RS00485 at 115.310 kb on + strand, within DDA3937_RS00485 at 115.310 kb on + strand, within DDA3937_RS00485 at 115.311 kb on - strand, within DDA3937_RS00485 at 115.311 kb on - strand, within DDA3937_RS00485 at 115.311 kb on - strand, within DDA3937_RS00485 at 115.311 kb on - strand, within DDA3937_RS00485 at 115.352 kb on + strand, within DDA3937_RS00485 at 115.352 kb on + strand, within DDA3937_RS00485 at 115.353 kb on - strand, within DDA3937_RS00485 at 115.353 kb on - strand, within DDA3937_RS00485 at 115.416 kb on + strand, within DDA3937_RS00485 at 115.457 kb on + strand at 115.457 kb on + strand at 115.458 kb on - strand at 115.458 kb on - strand at 115.458 kb on - strand at 115.493 kb on - strand at 115.515 kb on + strand at 115.515 kb on + strand at 115.515 kb on + strand at 115.515 kb on + strand at 115.516 kb on - strand at 115.516 kb on - strand at 115.518 kb on - strand at 115.529 kb on - strand at 115.529 kb on - strand at 115.538 kb on - strand at 115.628 kb on + strand, within DDA3937_RS00490 at 115.628 kb on + strand, within DDA3937_RS00490 at 115.628 kb on + strand, within DDA3937_RS00490 at 115.629 kb on - strand, within DDA3937_RS00490 at 115.629 kb on - strand, within DDA3937_RS00490 at 115.674 kb on + strand, within DDA3937_RS00490 at 115.674 kb on + strand, within DDA3937_RS00490 at 115.716 kb on - strand, within DDA3937_RS00490 at 115.751 kb on + strand, within DDA3937_RS00490 at 115.751 kb on + strand, within DDA3937_RS00490 at 115.752 kb on - strand, within DDA3937_RS00490 at 115.757 kb on - strand, within DDA3937_RS00490 at 115.757 kb on - strand, within DDA3937_RS00490 at 115.789 kb on + strand at 115.789 kb on + strand at 115.789 kb on + strand at 115.789 kb on + strand at 115.790 kb on - strand at 115.790 kb on - strand at 115.790 kb on - strand at 115.790 kb on - strand at 115.790 kb on - strand at 115.790 kb on - strand at 115.815 kb on + strand at 115.815 kb on + strand at 115.815 kb on + strand at 115.816 kb on - strand at 115.827 kb on + strand at 115.827 kb on + strand at 115.827 kb on + strand at 115.827 kb on + strand at 115.828 kb on - strand at 115.828 kb on - strand at 115.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 112,865 + +0.3 112,865 + -2.8 112,865 + +1.3 112,865 + +0.4 112,866 - -3.4 112,867 + +1.2 112,867 + -1.6 112,868 - -2.0 112,868 - +2.0 112,868 - +4.3 112,868 - -2.1 112,868 - -3.4 112,873 + -2.7 112,874 - -2.3 112,896 + +0.6 112,897 - +0.0 112,954 + -1.4 112,962 - +0.2 112,962 - -0.8 113,195 + DDA3937_RS00475 0.32 +0.2 113,196 - DDA3937_RS00475 0.32 -1.9 113,215 + DDA3937_RS00475 0.34 -0.1 113,561 + DDA3937_RS00475 0.69 +1.4 113,561 + DDA3937_RS00475 0.69 -0.7 113,561 + DDA3937_RS00475 0.69 -2.2 113,562 - DDA3937_RS00475 0.70 +1.9 113,562 - DDA3937_RS00475 0.70 +2.2 113,562 - DDA3937_RS00475 0.70 -2.6 113,624 + DDA3937_RS00475 0.76 -0.4 113,624 + DDA3937_RS00475 0.76 +1.4 113,624 + DDA3937_RS00475 0.76 -1.2 113,625 - DDA3937_RS00475 0.76 -2.6 113,625 - DDA3937_RS00475 0.76 -0.6 113,625 - DDA3937_RS00475 0.76 -0.2 113,625 - DDA3937_RS00475 0.76 -1.1 113,711 + DDA3937_RS00475 0.85 -1.5 113,712 - DDA3937_RS00475 0.85 -0.8 113,824 + +1.8 113,825 - -0.8 113,825 - -2.6 113,856 + -0.3 113,857 - -0.3 113,857 - -2.3 113,890 + -1.4 113,964 - DDA3937_RS00480 0.11 -1.6 113,964 - DDA3937_RS00480 0.11 +1.6 114,045 + DDA3937_RS00480 0.19 +0.6 114,045 + DDA3937_RS00480 0.19 -3.5 114,046 - DDA3937_RS00480 0.19 -2.1 114,097 + DDA3937_RS00480 0.24 -0.8 114,097 + DDA3937_RS00480 0.24 -0.3 114,097 + DDA3937_RS00480 0.24 -0.8 114,097 + DDA3937_RS00480 0.24 +1.3 114,098 - DDA3937_RS00480 0.24 -0.1 114,098 - DDA3937_RS00480 0.24 -1.3 114,098 - DDA3937_RS00480 0.24 -1.0 114,100 + DDA3937_RS00480 0.24 -2.3 114,101 - DDA3937_RS00480 0.24 -3.6 114,101 - DDA3937_RS00480 0.24 -2.5 114,101 - DDA3937_RS00480 0.24 -2.0 114,196 - DDA3937_RS00480 0.34 -1.9 114,196 - -0.7 114,322 + DDA3937_RS00480 0.46 -2.7 114,322 + DDA3937_RS00480 0.46 -1.2 114,323 - DDA3937_RS00480 0.46 +0.3 114,323 - DDA3937_RS00480 0.46 -0.1 114,366 + DDA3937_RS00480 0.50 +1.1 114,503 - DDA3937_RS00480 0.64 -1.2 114,565 + DDA3937_RS00480 0.70 -1.4 114,565 + DDA3937_RS00480 0.70 +1.2 114,565 + DDA3937_RS00480 0.70 -0.7 114,565 + DDA3937_RS00480 0.70 -2.1 114,565 + DDA3937_RS00480 0.70 -2.6 114,565 + DDA3937_RS00480 0.70 -1.9 114,566 - DDA3937_RS00480 0.70 -1.8 114,566 - DDA3937_RS00480 0.70 -1.4 114,566 - DDA3937_RS00480 0.70 +0.7 114,628 + DDA3937_RS00480 0.76 -1.9 114,629 - DDA3937_RS00480 0.77 -3.1 114,629 - DDA3937_RS00480 0.77 +1.6 114,857 + -2.1 114,857 + +1.2 114,857 + +0.6 114,858 - +0.2 114,874 + -0.6 114,874 + -2.6 114,874 + +1.4 114,874 + -0.7 114,878 + -0.4 114,878 + +0.4 114,878 + -2.1 114,878 + -1.2 114,878 + -1.2 114,878 + -2.7 114,878 + -0.4 114,879 - -1.0 114,879 - -1.9 114,879 - -1.7 114,879 - -2.3 114,933 + +0.9 114,933 + -1.6 114,966 + +1.9 114,967 - +2.0 114,972 - -0.3 114,972 - +0.3 115,040 + DDA3937_RS00485 0.13 -1.9 115,040 + DDA3937_RS00485 0.13 -1.0 115,040 + DDA3937_RS00485 0.13 -3.0 115,040 + DDA3937_RS00485 0.13 +0.1 115,040 + DDA3937_RS00485 0.13 +0.1 115,040 + DDA3937_RS00485 0.13 +0.3 115,040 + DDA3937_RS00485 0.13 +1.5 115,040 + DDA3937_RS00485 0.13 -1.0 115,040 + DDA3937_RS00485 0.13 -2.2 115,040 + DDA3937_RS00485 0.13 -2.7 115,040 + DDA3937_RS00485 0.13 -1.0 115,041 - DDA3937_RS00485 0.13 +0.6 115,041 - DDA3937_RS00485 0.13 -3.7 115,041 - DDA3937_RS00485 0.13 -1.6 115,041 - DDA3937_RS00485 0.13 +0.7 115,041 - DDA3937_RS00485 0.13 -2.2 115,084 - DDA3937_RS00485 0.21 +0.8 115,085 + DDA3937_RS00485 0.22 -3.9 115,085 + DDA3937_RS00485 0.22 +0.0 115,085 + DDA3937_RS00485 0.22 -0.4 115,085 + DDA3937_RS00485 0.22 -0.9 115,085 + DDA3937_RS00485 0.22 -2.5 115,085 + DDA3937_RS00485 0.22 +0.1 115,085 + DDA3937_RS00485 0.22 -1.4 115,085 + DDA3937_RS00485 0.22 +0.0 115,086 - DDA3937_RS00485 0.22 -0.9 115,086 - DDA3937_RS00485 0.22 -3.4 115,086 - DDA3937_RS00485 0.22 +1.1 115,086 - DDA3937_RS00485 0.22 -0.3 115,086 - DDA3937_RS00485 0.22 -0.1 115,086 - DDA3937_RS00485 0.22 -0.8 115,086 - DDA3937_RS00485 0.22 -2.1 115,086 - DDA3937_RS00485 0.22 +0.5 115,086 - DDA3937_RS00485 0.22 -0.4 115,086 - DDA3937_RS00485 0.22 +1.5 115,129 + DDA3937_RS00485 0.30 +0.1 115,129 + DDA3937_RS00485 0.30 +0.8 115,129 + DDA3937_RS00485 0.30 -1.9 115,129 + DDA3937_RS00485 0.30 -1.3 115,129 + DDA3937_RS00485 0.30 +1.7 115,129 + DDA3937_RS00485 0.30 -0.1 115,129 + DDA3937_RS00485 0.30 -4.4 115,129 + DDA3937_RS00485 0.30 +0.6 115,129 + DDA3937_RS00485 0.30 -3.0 115,129 + DDA3937_RS00485 0.30 -2.2 115,130 - DDA3937_RS00485 0.30 +0.2 115,130 - DDA3937_RS00485 0.30 +3.2 115,130 - DDA3937_RS00485 0.30 -1.3 115,130 - DDA3937_RS00485 0.30 -3.1 115,130 - DDA3937_RS00485 0.30 -0.9 115,130 - DDA3937_RS00485 0.30 +1.8 115,134 + DDA3937_RS00485 0.31 -0.4 115,207 - DDA3937_RS00485 0.44 -3.5 115,238 + DDA3937_RS00485 0.50 -1.7 115,238 + DDA3937_RS00485 0.50 +0.0 115,238 + DDA3937_RS00485 0.50 -1.7 115,238 + DDA3937_RS00485 0.50 -0.4 115,238 + DDA3937_RS00485 0.50 -0.6 115,238 + DDA3937_RS00485 0.50 -1.7 115,239 - DDA3937_RS00485 0.50 -1.5 115,239 - DDA3937_RS00485 0.50 -0.4 115,239 - DDA3937_RS00485 0.50 -0.3 115,239 - DDA3937_RS00485 0.50 -3.0 115,260 + DDA3937_RS00485 0.54 -1.9 115,261 - DDA3937_RS00485 0.54 -0.4 115,279 - DDA3937_RS00485 0.58 -0.3 115,310 + DDA3937_RS00485 0.64 -3.1 115,310 + DDA3937_RS00485 0.64 +1.4 115,310 + DDA3937_RS00485 0.64 -3.4 115,310 + DDA3937_RS00485 0.64 -3.1 115,311 - DDA3937_RS00485 0.64 +0.6 115,311 - DDA3937_RS00485 0.64 +0.5 115,311 - DDA3937_RS00485 0.64 -0.9 115,311 - DDA3937_RS00485 0.64 +0.8 115,352 + DDA3937_RS00485 0.72 +2.3 115,352 + DDA3937_RS00485 0.72 -0.6 115,353 - DDA3937_RS00485 0.72 +0.2 115,353 - DDA3937_RS00485 0.72 +1.3 115,416 + DDA3937_RS00485 0.84 +0.9 115,457 + -0.9 115,457 + +1.1 115,458 - -1.6 115,458 - +0.4 115,458 - -2.3 115,493 - +0.9 115,515 + +0.9 115,515 + -0.3 115,515 + +1.0 115,515 + -0.1 115,516 - +2.0 115,516 - +0.0 115,518 - +2.0 115,529 - -3.8 115,529 - -2.1 115,538 - -0.6 115,628 + DDA3937_RS00490 0.29 +0.9 115,628 + DDA3937_RS00490 0.29 -1.5 115,628 + DDA3937_RS00490 0.29 +0.3 115,629 - DDA3937_RS00490 0.29 +2.0 115,629 - DDA3937_RS00490 0.29 +0.5 115,674 + DDA3937_RS00490 0.49 +0.6 115,674 + DDA3937_RS00490 0.49 +0.3 115,716 - DDA3937_RS00490 0.68 +1.5 115,751 + DDA3937_RS00490 0.83 +0.6 115,751 + DDA3937_RS00490 0.83 -0.0 115,752 - DDA3937_RS00490 0.83 +1.7 115,757 - DDA3937_RS00490 0.86 -1.0 115,757 - DDA3937_RS00490 0.86 -1.8 115,789 + -2.1 115,789 + -0.3 115,789 + -1.7 115,789 + +0.7 115,790 - -0.4 115,790 - -2.9 115,790 - +0.0 115,790 - -1.0 115,790 - -4.5 115,790 - -0.1 115,815 + +0.8 115,815 + +1.8 115,815 + -1.0 115,816 - -1.6 115,827 + +0.4 115,827 + +0.0 115,827 + +0.8 115,827 + -0.8 115,828 - -0.1 115,828 - +2.8 115,828 - -1.6
Or see this region's nucleotide sequence