Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00395 and DDA3937_RS00400 are separated by 50 nucleotides DDA3937_RS00400 and DDA3937_RS00405 are separated by 3 nucleotides DDA3937_RS00405 and DDA3937_RS00410 are separated by 16 nucleotides
DDA3937_RS00395: DDA3937_RS00395 - FGGY-family carbohydrate kinase, at 92,176 to 93,762
_RS00395
DDA3937_RS00400: DDA3937_RS00400 - signal transduction protein, at 93,813 to 95,483
_RS00400
DDA3937_RS00405: DDA3937_RS00405 - dihydrodipicolinate synthase family protein, at 95,487 to 96,446
_RS00405
DDA3937_RS00410: DDA3937_RS00410 - exo-alpha-sialidase, at 96,463 to 97,509
_RS00410
Position (kb) 93
94
95
96 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 92.922 kb on + strand, within DDA3937_RS00395 at 93.001 kb on - strand, within DDA3937_RS00395 at 93.009 kb on + strand, within DDA3937_RS00395 at 93.010 kb on - strand, within DDA3937_RS00395 at 93.010 kb on - strand, within DDA3937_RS00395 at 93.048 kb on - strand, within DDA3937_RS00395 at 93.199 kb on + strand, within DDA3937_RS00395 at 93.377 kb on - strand, within DDA3937_RS00395 at 93.604 kb on + strand at 93.706 kb on + strand at 93.710 kb on + strand at 93.718 kb on + strand at 93.719 kb on - strand at 93.719 kb on - strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.809 kb on + strand at 93.810 kb on - strand at 93.810 kb on - strand at 93.810 kb on - strand at 93.810 kb on - strand at 93.810 kb on - strand at 93.810 kb on - strand at 93.810 kb on - strand at 93.810 kb on - strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.812 kb on + strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 93.813 kb on - strand at 94.050 kb on - strand, within DDA3937_RS00400 at 94.131 kb on + strand, within DDA3937_RS00400 at 94.191 kb on - strand, within DDA3937_RS00400 at 94.362 kb on + strand, within DDA3937_RS00400 at 94.363 kb on - strand, within DDA3937_RS00400 at 94.437 kb on + strand, within DDA3937_RS00400 at 94.438 kb on - strand, within DDA3937_RS00400 at 94.438 kb on - strand, within DDA3937_RS00400 at 94.438 kb on - strand, within DDA3937_RS00400 at 94.438 kb on - strand, within DDA3937_RS00400 at 94.451 kb on + strand, within DDA3937_RS00400 at 94.588 kb on + strand, within DDA3937_RS00400 at 94.589 kb on - strand, within DDA3937_RS00400 at 94.594 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.768 kb on - strand, within DDA3937_RS00400 at 95.025 kb on + strand, within DDA3937_RS00400 at 95.026 kb on - strand, within DDA3937_RS00400 at 95.026 kb on - strand, within DDA3937_RS00400 at 95.097 kb on + strand, within DDA3937_RS00400 at 95.280 kb on + strand, within DDA3937_RS00400 at 95.280 kb on + strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.370 kb on + strand at 95.435 kb on + strand at 95.435 kb on + strand at 95.436 kb on - strand at 95.436 kb on - strand at 95.436 kb on - strand at 95.481 kb on + strand at 95.481 kb on + strand at 95.481 kb on + strand at 95.482 kb on - strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.526 kb on + strand at 95.526 kb on + strand at 95.527 kb on - strand at 95.527 kb on - strand at 95.527 kb on - strand at 95.613 kb on + strand, within DDA3937_RS00405 at 95.614 kb on - strand, within DDA3937_RS00405 at 95.709 kb on - strand, within DDA3937_RS00405 at 95.709 kb on - strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.947 kb on - strand, within DDA3937_RS00405 at 95.952 kb on + strand, within DDA3937_RS00405 at 96.006 kb on + strand, within DDA3937_RS00405 at 96.144 kb on + strand, within DDA3937_RS00405 at 96.145 kb on - strand, within DDA3937_RS00405 at 96.180 kb on + strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.297 kb on + strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.314 kb on + strand, within DDA3937_RS00405 at 96.315 kb on - strand, within DDA3937_RS00405
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 92,922 + DDA3937_RS00395 0.47 +0.4 93,001 - DDA3937_RS00395 0.52 +1.8 93,009 + DDA3937_RS00395 0.52 +1.8 93,010 - DDA3937_RS00395 0.53 +1.2 93,010 - DDA3937_RS00395 0.53 -0.2 93,048 - DDA3937_RS00395 0.55 +0.1 93,199 + DDA3937_RS00395 0.64 +1.5 93,377 - DDA3937_RS00395 0.76 -0.4 93,604 + +2.7 93,706 + +0.8 93,710 + -2.6 93,718 + -4.0 93,719 - -2.4 93,719 - +0.7 93,809 + -1.2 93,809 + +0.4 93,809 + +1.0 93,809 + -0.4 93,809 + -1.4 93,809 + +0.2 93,809 + -0.6 93,809 + -0.7 93,809 + -2.8 93,809 + -1.6 93,809 + +1.3 93,809 + -1.6 93,809 + -2.0 93,809 + +0.4 93,809 + +0.9 93,810 - -0.6 93,810 - -2.3 93,810 - +0.9 93,810 - +2.1 93,810 - -0.6 93,810 - +0.3 93,810 - -2.9 93,810 - -3.4 93,812 + -3.4 93,812 + +0.9 93,812 + +0.5 93,812 + -2.1 93,812 + -2.1 93,812 + -2.1 93,812 + -0.4 93,812 + -1.2 93,812 + +1.6 93,812 + +1.0 93,812 + +1.4 93,812 + +0.6 93,812 + +0.4 93,812 + -0.1 93,812 + +1.9 93,812 + -1.4 93,812 + -0.2 93,812 + -3.2 93,812 + -3.2 93,812 + +1.0 93,813 - -0.2 93,813 - -2.7 93,813 - -0.0 93,813 - +0.6 93,813 - -2.9 93,813 - +0.9 93,813 - -3.5 93,813 - -0.9 93,813 - -0.6 93,813 - +2.1 93,813 - -0.5 93,813 - -1.6 93,813 - +0.0 93,813 - -1.6 94,050 - DDA3937_RS00400 0.14 -0.0 94,131 + DDA3937_RS00400 0.19 -0.3 94,191 - DDA3937_RS00400 0.23 -2.6 94,362 + DDA3937_RS00400 0.33 +1.3 94,363 - DDA3937_RS00400 0.33 -1.7 94,437 + DDA3937_RS00400 0.37 +0.5 94,438 - DDA3937_RS00400 0.37 -0.3 94,438 - DDA3937_RS00400 0.37 +0.2 94,438 - DDA3937_RS00400 0.37 -0.4 94,438 - DDA3937_RS00400 0.37 -1.2 94,451 + DDA3937_RS00400 0.38 -1.2 94,588 + DDA3937_RS00400 0.46 -0.4 94,589 - DDA3937_RS00400 0.46 +1.3 94,594 - DDA3937_RS00400 0.47 +0.4 94,624 - DDA3937_RS00400 0.49 +0.1 94,624 - DDA3937_RS00400 0.49 -2.3 94,624 - DDA3937_RS00400 0.49 +3.0 94,624 - DDA3937_RS00400 0.49 -1.1 94,768 - DDA3937_RS00400 0.57 +0.0 95,025 + DDA3937_RS00400 0.73 -2.3 95,026 - DDA3937_RS00400 0.73 -0.4 95,026 - DDA3937_RS00400 0.73 +0.3 95,097 + DDA3937_RS00400 0.77 -0.5 95,280 + DDA3937_RS00400 0.88 +0.1 95,280 + DDA3937_RS00400 0.88 +0.8 95,281 - DDA3937_RS00400 0.88 +0.8 95,281 - DDA3937_RS00400 0.88 +1.6 95,281 - DDA3937_RS00400 0.88 +1.5 95,370 + +1.3 95,435 + +0.0 95,435 + +0.8 95,436 - -1.6 95,436 - -2.4 95,436 - -1.6 95,481 + +2.2 95,481 + -1.7 95,481 + -1.6 95,482 - -2.6 95,493 + +1.0 95,493 + +0.7 95,493 + -0.3 95,493 + -1.4 95,494 - -2.0 95,494 - +1.8 95,494 - +0.6 95,494 - -1.0 95,526 + -0.7 95,526 + -2.5 95,527 - -1.7 95,527 - -1.4 95,527 - -2.2 95,613 + DDA3937_RS00405 0.13 -1.2 95,614 - DDA3937_RS00405 0.13 -0.8 95,709 - DDA3937_RS00405 0.23 -0.6 95,709 - DDA3937_RS00405 0.23 -1.4 95,934 + DDA3937_RS00405 0.47 -0.8 95,934 + DDA3937_RS00405 0.47 -1.1 95,934 + DDA3937_RS00405 0.47 -0.5 95,935 - DDA3937_RS00405 0.47 +0.2 95,935 - DDA3937_RS00405 0.47 +0.9 95,935 - DDA3937_RS00405 0.47 +0.1 95,935 - DDA3937_RS00405 0.47 -3.1 95,935 - DDA3937_RS00405 0.47 +1.4 95,935 - DDA3937_RS00405 0.47 -2.3 95,935 - DDA3937_RS00405 0.47 -0.7 95,935 - DDA3937_RS00405 0.47 -4.0 95,935 - DDA3937_RS00405 0.47 +1.2 95,947 - DDA3937_RS00405 0.48 -2.9 95,952 + DDA3937_RS00405 0.48 +1.2 96,006 + DDA3937_RS00405 0.54 -0.6 96,144 + DDA3937_RS00405 0.68 +0.0 96,145 - DDA3937_RS00405 0.69 +0.5 96,180 + DDA3937_RS00405 0.72 +0.4 96,181 - DDA3937_RS00405 0.72 -1.6 96,181 - DDA3937_RS00405 0.72 +1.6 96,181 - DDA3937_RS00405 0.72 +3.2 96,181 - DDA3937_RS00405 0.72 +0.0 96,181 - DDA3937_RS00405 0.72 +0.7 96,297 + DDA3937_RS00405 0.84 +1.0 96,298 - DDA3937_RS00405 0.84 +0.3 96,298 - DDA3937_RS00405 0.84 +2.6 96,298 - DDA3937_RS00405 0.84 +1.9 96,298 - DDA3937_RS00405 0.84 +0.0 96,298 - DDA3937_RS00405 0.84 -3.2 96,314 + DDA3937_RS00405 0.86 -1.7 96,315 - DDA3937_RS00405 0.86 -0.5
Or see this region's nucleotide sequence