Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00160 and DDA3937_RS00165 are separated by 155 nucleotides DDA3937_RS00165 and DDA3937_RS00170 are separated by 181 nucleotides
DDA3937_RS00160: DDA3937_RS00160 - AsmA family protein, at 36,993 to 38,735
_RS00160
DDA3937_RS00165: DDA3937_RS00165 - uracil-xanthine permease, at 38,891 to 40,279
_RS00165
DDA3937_RS00170: DDA3937_RS00170 - ATP-dependent DNA helicase RecG, at 40,461 to 42,542
_RS00170
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 38.112 kb on + strand, within DDA3937_RS00160 at 38.144 kb on + strand at 38.165 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.203 kb on - strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.264 kb on - strand, within DDA3937_RS00160 at 38.390 kb on + strand, within DDA3937_RS00160 at 38.391 kb on - strand, within DDA3937_RS00160 at 38.391 kb on - strand, within DDA3937_RS00160 at 38.484 kb on - strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.488 kb on - strand, within DDA3937_RS00160 at 38.488 kb on - strand, within DDA3937_RS00160 at 38.633 kb on + strand at 38.633 kb on + strand at 38.633 kb on + strand at 38.633 kb on + strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.661 kb on + strand at 38.662 kb on - strand at 38.662 kb on - strand at 38.662 kb on - strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.698 kb on - strand at 38.727 kb on - strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.773 kb on + strand at 38.773 kb on + strand at 38.773 kb on + strand at 38.805 kb on - strand at 38.805 kb on - strand at 38.809 kb on + strand at 38.809 kb on + strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.812 kb on + strand at 38.812 kb on + strand at 38.813 kb on - strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.822 kb on - strand at 38.822 kb on - strand at 38.822 kb on - strand at 38.825 kb on + strand at 38.825 kb on + strand at 38.838 kb on + strand at 38.838 kb on + strand at 38.838 kb on + strand at 38.839 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.856 kb on + strand at 38.856 kb on + strand at 38.856 kb on + strand at 38.857 kb on - strand at 38.863 kb on + strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.893 kb on - strand at 38.930 kb on - strand at 38.930 kb on - strand at 39.230 kb on + strand at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.231 kb on - strand, within DDA3937_RS00165 at 39.231 kb on - strand, within DDA3937_RS00165 at 39.234 kb on + strand, within DDA3937_RS00165 at 39.234 kb on + strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.271 kb on + strand, within DDA3937_RS00165 at 39.272 kb on - strand, within DDA3937_RS00165 at 39.301 kb on + strand, within DDA3937_RS00165 at 39.301 kb on + strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.370 kb on - strand, within DDA3937_RS00165 at 39.370 kb on - strand, within DDA3937_RS00165 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.499 kb on - strand, within DDA3937_RS00165 at 39.502 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165 at 39.785 kb on - strand, within DDA3937_RS00165 at 39.909 kb on - strand, within DDA3937_RS00165 at 40.212 kb on + strand at 40.282 kb on + strand at 40.318 kb on - strand at 40.378 kb on - strand at 40.399 kb on - strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.411 kb on - strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.482 kb on - strand at 40.482 kb on - strand at 40.482 kb on - strand at 40.750 kb on + strand, within DDA3937_RS00170 at 40.750 kb on + strand, within DDA3937_RS00170 at 40.751 kb on - strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 41.083 kb on + strand, within DDA3937_RS00170 at 41.084 kb on - strand, within DDA3937_RS00170 at 41.084 kb on - strand, within DDA3937_RS00170 at 41.169 kb on - strand, within DDA3937_RS00170 at 41.224 kb on + strand, within DDA3937_RS00170 at 41.224 kb on + strand, within DDA3937_RS00170 at 41.225 kb on - strand, within DDA3937_RS00170 at 41.225 kb on - strand, within DDA3937_RS00170
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 38,112 + DDA3937_RS00160 0.64 -2.4 38,144 + +1.6 38,165 + DDA3937_RS00160 0.67 -1.1 38,187 + DDA3937_RS00160 0.69 -0.3 38,187 + DDA3937_RS00160 0.69 -4.2 38,187 + DDA3937_RS00160 0.69 -1.9 38,187 + DDA3937_RS00160 0.69 -0.7 38,187 + DDA3937_RS00160 0.69 -2.1 38,203 - DDA3937_RS00160 0.69 +0.6 38,259 + DDA3937_RS00160 0.73 -1.4 38,259 + DDA3937_RS00160 0.73 -1.9 38,259 + DDA3937_RS00160 0.73 -2.2 38,259 + DDA3937_RS00160 0.73 -2.9 38,260 - DDA3937_RS00160 0.73 -1.4 38,260 - DDA3937_RS00160 0.73 -0.7 38,260 - DDA3937_RS00160 0.73 +0.4 38,260 - DDA3937_RS00160 0.73 +0.7 38,260 - DDA3937_RS00160 0.73 -0.8 38,263 + DDA3937_RS00160 0.73 -0.3 38,263 + DDA3937_RS00160 0.73 +1.9 38,263 + DDA3937_RS00160 0.73 -1.6 38,264 - DDA3937_RS00160 0.73 -1.5 38,390 + DDA3937_RS00160 0.80 -1.8 38,391 - DDA3937_RS00160 0.80 +1.0 38,391 - DDA3937_RS00160 0.80 -0.6 38,484 - DDA3937_RS00160 0.86 -0.7 38,487 + DDA3937_RS00160 0.86 +0.3 38,487 + DDA3937_RS00160 0.86 -3.8 38,487 + -0.7 38,487 + DDA3937_RS00160 0.86 -3.4 38,487 + DDA3937_RS00160 0.86 +0.4 38,488 - DDA3937_RS00160 0.86 +0.7 38,488 - DDA3937_RS00160 0.86 +0.5 38,633 + -1.7 38,633 + +0.8 38,633 + +2.6 38,633 + -1.9 38,634 - +0.9 38,634 - -2.6 38,634 - -1.0 38,634 - -0.4 38,634 - +1.0 38,634 - +1.5 38,634 - -0.7 38,634 - -3.0 38,661 + -0.2 38,662 - -1.4 38,662 - -2.1 38,662 - +1.0 38,664 + -0.3 38,664 + -1.4 38,664 + +0.8 38,664 + -1.2 38,665 - -2.7 38,665 - -1.0 38,665 - -0.9 38,665 - -2.5 38,668 + -0.1 38,668 + +1.4 38,668 + -1.6 38,668 + +1.0 38,668 + -2.4 38,668 + -2.7 38,668 + -1.0 38,668 + +0.9 38,668 + +0.6 38,668 + -2.2 38,669 - +0.0 38,669 - -1.6 38,669 - -1.2 38,669 - -0.2 38,669 - +0.4 38,698 - -1.9 38,727 - -0.6 38,740 + -1.0 38,740 + +0.3 38,740 + -0.2 38,740 + -2.2 38,741 - -1.0 38,741 - +1.6 38,741 - -1.1 38,741 - +1.6 38,773 + -0.4 38,773 + -1.4 38,773 + +0.6 38,805 - -0.8 38,805 - -0.1 38,809 + -1.4 38,809 + -0.8 38,810 - -1.8 38,810 - +0.6 38,810 - +0.6 38,810 - -0.4 38,810 - -0.2 38,810 - +0.6 38,812 + +0.2 38,812 + +0.8 38,813 - -2.2 38,821 + -0.9 38,821 + +1.2 38,821 + +2.7 38,821 + +1.7 38,822 - -0.0 38,822 - -2.5 38,822 - -1.4 38,825 + +1.0 38,825 + +0.4 38,838 + +1.2 38,838 + +0.3 38,838 + -3.7 38,839 - -0.5 38,854 - -2.4 38,854 - +1.2 38,854 - -0.9 38,854 - +0.6 38,856 + -0.2 38,856 + -1.2 38,856 + +0.1 38,857 - +0.9 38,863 + -1.6 38,864 - +0.2 38,864 - +1.3 38,864 - +0.7 38,864 - +0.4 38,893 - -2.1 38,930 - +0.6 38,930 - +0.0 39,230 + +0.0 39,230 + DDA3937_RS00165 0.24 +2.3 39,230 + DDA3937_RS00165 0.24 -1.2 39,230 + DDA3937_RS00165 0.24 +2.2 39,230 + DDA3937_RS00165 0.24 -0.6 39,230 + DDA3937_RS00165 0.24 -1.2 39,231 - DDA3937_RS00165 0.24 +0.2 39,231 - DDA3937_RS00165 0.24 +0.5 39,234 + DDA3937_RS00165 0.25 +0.3 39,234 + DDA3937_RS00165 0.25 -0.4 39,235 - DDA3937_RS00165 0.25 -0.7 39,235 - DDA3937_RS00165 0.25 +1.3 39,235 - DDA3937_RS00165 0.25 -1.7 39,271 + DDA3937_RS00165 0.27 -0.6 39,272 - DDA3937_RS00165 0.27 -2.9 39,301 + DDA3937_RS00165 0.30 +0.7 39,301 + DDA3937_RS00165 0.30 -1.4 39,302 - DDA3937_RS00165 0.30 -1.7 39,302 - DDA3937_RS00165 0.30 +1.0 39,302 - DDA3937_RS00165 0.30 -0.1 39,302 - DDA3937_RS00165 0.30 +0.0 39,369 + DDA3937_RS00165 0.34 +0.2 39,369 + DDA3937_RS00165 0.34 -0.4 39,369 + DDA3937_RS00165 0.34 -2.6 39,369 + DDA3937_RS00165 0.34 -2.6 39,369 + DDA3937_RS00165 0.34 -1.8 39,370 - DDA3937_RS00165 0.34 +1.5 39,370 - DDA3937_RS00165 0.34 +0.2 39,498 + DDA3937_RS00165 0.44 -0.2 39,498 + DDA3937_RS00165 0.44 -0.6 39,499 - DDA3937_RS00165 0.44 -1.4 39,502 - DDA3937_RS00165 0.44 +0.2 39,618 - DDA3937_RS00165 0.52 +2.6 39,618 - DDA3937_RS00165 0.52 -1.6 39,785 - DDA3937_RS00165 0.64 +2.2 39,909 - DDA3937_RS00165 0.73 +1.9 40,212 + -3.2 40,282 + +2.1 40,318 - -3.2 40,378 - +0.0 40,399 - -1.2 40,402 + -0.7 40,402 + -1.4 40,402 + -1.0 40,402 + +0.1 40,402 + -0.7 40,402 + +2.3 40,403 - +0.8 40,403 - -2.9 40,403 - -0.7 40,403 - -1.4 40,403 - -0.7 40,403 - -2.2 40,403 - -2.9 40,411 - -1.3 40,472 + +0.3 40,472 + -0.6 40,472 + -0.4 40,472 + -2.6 40,472 + -2.1 40,472 + -4.1 40,473 - -2.1 40,473 - -0.1 40,473 - +0.4 40,473 - -1.9 40,473 - +0.3 40,482 - -2.1 40,482 - -0.4 40,482 - +0.8 40,750 + DDA3937_RS00170 0.14 +1.4 40,750 + DDA3937_RS00170 0.14 -0.4 40,751 - DDA3937_RS00170 0.14 -0.2 40,892 + DDA3937_RS00170 0.21 -0.4 40,892 + DDA3937_RS00170 0.21 -2.2 40,892 + DDA3937_RS00170 0.21 -1.6 41,083 + DDA3937_RS00170 0.30 -1.2 41,084 - DDA3937_RS00170 0.30 -1.8 41,084 - DDA3937_RS00170 0.30 -2.6 41,169 - DDA3937_RS00170 0.34 -2.6 41,224 + DDA3937_RS00170 0.37 -1.7 41,224 + DDA3937_RS00170 0.37 -1.9 41,225 - DDA3937_RS00170 0.37 -0.6 41,225 - DDA3937_RS00170 0.37 -0.2
Or see this region's nucleotide sequence